Wall clock time and date at job start Tue Mar 31 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49225 * 2 1 4 4 C 1.53191 * 109.49610 * 239.93722 * 2 1 3 5 5 N 1.46918 * 108.77530 * 185.41303 * 4 2 1 6 6 C 1.34779 * 120.63148 * 233.58509 * 5 4 2 7 7 O 1.21573 * 119.99674 * 5.85234 * 6 5 4 8 8 C 1.47756 * 120.00531 * 185.85128 * 6 5 4 9 9 C 1.40602 * 120.26444 * 41.65977 * 8 6 5 10 10 N 1.30796 * 121.53725 * 179.72679 * 9 8 6 11 11 C 1.33825 * 121.72127 * 0.02562 * 10 9 8 12 12 C 1.40525 * 120.82337 * 179.97438 * 11 10 9 13 13 C 1.36132 * 119.81565 * 180.02562 * 12 11 10 14 14 C 1.39341 * 121.08991 * 359.95580 * 13 12 11 15 15 C 1.36137 * 120.83412 * 0.04513 * 14 13 12 16 16 C 1.40549 * 119.61738 * 359.97438 * 15 14 13 17 17 C 1.39006 * 120.26986 * 221.39491 * 8 6 5 18 18 C 1.46920 * 118.73943 * 53.85895 * 5 4 2 19 19 C 1.53622 * 108.54477 * 306.09482 * 18 5 4 20 20 C 1.53034 * 109.24198 * 54.85581 * 19 18 5 21 21 H 1.09000 * 109.46296 * 58.52818 * 20 19 18 22 22 N 1.46504 * 109.46317 * 178.49104 * 20 19 18 23 23 C 1.36936 * 119.99957 * 275.06982 * 22 20 19 24 24 H 1.08003 * 119.99734 * 359.97438 * 23 22 20 25 25 C 1.38806 * 119.99979 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99989 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00187 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46909 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.46920 * 119.99625 * 27 25 23 30 30 H 1.48498 * 109.47332 * 240.00194 * 27 25 23 31 31 H 1.09005 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46969 * 300.06316 * 1 2 3 33 33 H 1.08997 * 109.47209 * 60.06589 * 1 2 3 34 34 H 1.09005 * 109.58560 * 65.62530 * 4 2 1 35 35 H 1.09003 * 109.58567 * 305.20617 * 4 2 1 36 36 H 1.07998 * 119.23550 * 359.71098 * 9 8 6 37 37 H 1.07995 * 120.08874 * 0.02562 * 12 11 10 38 38 H 1.07998 * 119.45112 * 179.97438 * 13 12 11 39 39 H 1.07994 * 119.58088 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.19088 * 179.97438 * 15 14 13 41 41 H 1.07998 * 121.02004 * 0.24348 * 17 8 6 42 42 H 1.09004 * 109.58527 * 65.93165 * 18 5 4 43 43 H 1.09001 * 109.58739 * 186.35104 * 18 5 4 44 44 H 1.09001 * 109.63509 * 294.86675 * 19 18 5 45 45 H 1.08997 * 109.43314 * 174.72671 * 19 18 5 46 46 H 0.97000 * 119.99708 * 95.06846 * 22 20 19 47 47 H 0.97002 * 119.99957 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5045 -0.8288 -1.1699 6 6 4.2810 -0.3857 -2.1785 7 8 3.7807 0.2021 -3.1177 8 6 5.7404 -0.6144 -2.1428 9 6 6.2535 -1.8515 -1.7147 10 7 7.5404 -2.0826 -1.6783 11 6 8.4325 -1.1552 -2.0454 12 6 9.8111 -1.4237 -1.9983 13 6 10.7007 -0.4649 -2.3761 14 6 10.2685 0.7858 -2.8125 15 6 8.9415 1.0839 -2.8721 16 6 7.9948 0.1181 -2.4893 17 6 6.6168 0.3898 -2.5374 18 6 4.1050 -1.4318 0.0278 19 6 3.5709 -0.6954 1.2657 20 6 2.0409 -0.7235 1.2481 21 1 1.6967 -1.7576 1.2347 22 7 1.5266 -0.0537 2.4453 23 6 1.3965 -0.7503 3.6170 24 1 1.6728 -1.7936 3.6584 25 6 0.9098 -0.1156 4.7514 26 7 0.5727 1.1557 4.7007 27 14 0.7317 -1.0661 6.3497 28 1 1.1750 -2.4683 6.1437 29 1 1.5696 -0.4316 7.3989 30 1 -0.6904 -1.0538 6.7772 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8905 34 1 1.7637 -0.1572 -2.1390 35 1 1.6051 -1.7212 -1.2986 36 1 5.5692 -2.6289 -1.4086 37 1 10.1638 -2.3879 -1.6634 38 1 11.7588 -0.6775 -2.3371 39 1 10.9955 1.5282 -3.1068 40 1 8.6181 2.0568 -3.2116 41 1 6.2501 1.3493 -2.8709 42 1 3.8338 -2.4862 0.0811 43 1 5.1896 -1.3332 -0.0181 44 1 3.9159 0.3385 1.2541 45 1 3.9335 -1.1903 2.1666 46 1 1.2782 0.8832 2.4079 47 1 0.2328 1.5993 5.4936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036192222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:11 Heat of formation + Delta-G solvation = 15.861462 kcal Electronic energy + Delta-G solvation = -28913.570673 eV Core-core repulsion = 25060.490707 eV Total energy + Delta-G solvation = -3853.079967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20045 -41.02624 -39.08619 -37.96710 -36.23340 -34.69306 -34.38187 -33.08344 -31.81466 -31.13929 -30.95151 -27.88549 -26.86735 -25.41288 -25.28397 -24.14278 -23.15272 -23.06845 -21.58392 -20.65228 -19.32842 -19.05133 -18.79548 -17.82403 -17.42298 -16.81506 -16.63800 -16.22426 -15.74864 -15.61509 -15.51641 -15.30374 -15.25201 -14.98029 -14.85904 -14.40756 -14.34191 -14.20476 -13.96869 -13.62959 -13.22155 -13.02450 -12.88849 -12.80071 -12.74041 -12.61207 -12.51226 -12.38153 -12.09555 -12.07696 -11.84014 -11.69345 -11.64323 -11.31704 -11.15520 -10.87795 -10.55168 -9.86772 -9.72491 -9.30954 -8.96166 -7.90958 -5.18432 -0.79837 -0.42519 0.83773 1.42410 1.48648 1.49193 1.58570 1.77149 2.06444 2.58135 3.01006 3.10872 3.33132 3.42785 3.53270 3.63526 3.77092 3.78435 3.82714 3.92245 3.99664 4.06076 4.21191 4.26460 4.32343 4.35917 4.42727 4.49206 4.64575 4.67627 4.72761 4.76284 4.80125 4.82653 4.93639 4.94728 5.02071 5.04340 5.18681 5.29387 5.34274 5.39319 5.40655 5.45756 5.49063 5.56534 5.61542 5.83750 6.24471 6.30860 6.72393 6.94222 7.37223 8.13257 8.36124 9.32870 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.002659 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.645480 B =10526.333951 C =11621.485779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.050 0.950 4 C 0.126 3.874 5 N -0.597 5.597 6 C 0.568 3.432 7 O -0.572 6.572 8 C -0.200 4.200 9 C 0.158 3.842 10 N -0.491 5.491 11 C 0.116 3.884 12 C -0.117 4.117 13 C -0.080 4.080 14 C -0.114 4.114 15 C -0.096 4.096 16 C -0.125 4.125 17 C 0.000 4.000 18 C 0.109 3.891 19 C -0.142 4.142 20 C 0.180 3.820 21 H 0.054 0.946 22 N -0.732 5.732 23 C -0.227 4.227 24 H 0.079 0.921 25 C -0.078 4.078 26 N -0.972 5.972 27 Si 0.966 3.034 28 H -0.263 1.263 29 H -0.299 1.299 30 H -0.298 1.298 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.183 0.817 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.370 0.630 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.127 -4.677 -18.022 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.069 0.931 4 C 0.004 3.996 5 N -0.327 5.327 6 C 0.356 3.644 7 O -0.453 6.453 8 C -0.205 4.205 9 C -0.015 4.015 10 N -0.198 5.198 11 C -0.004 4.004 12 C -0.136 4.136 13 C -0.100 4.100 14 C -0.132 4.132 15 C -0.115 4.115 16 C -0.127 4.127 17 C -0.026 4.026 18 C -0.013 4.013 19 C -0.183 4.183 20 C 0.071 3.929 21 H 0.072 0.928 22 N -0.370 5.370 23 C -0.359 4.359 24 H 0.097 0.903 25 C -0.270 4.270 26 N -0.623 5.623 27 Si 0.797 3.203 28 H -0.187 1.187 29 H -0.226 1.226 30 H -0.225 1.225 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.199 0.801 37 H 0.163 0.837 38 H 0.182 0.818 39 H 0.180 0.820 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.202 0.798 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.278 -5.346 -18.108 26.983 hybrid contribution -1.017 1.120 1.126 1.886 sum 18.261 -4.227 -16.981 25.292 Atomic orbital electron populations 1.21574 0.93738 1.02216 1.01215 1.21609 0.96821 0.99029 0.94567 0.93131 1.21711 0.78037 1.01918 0.97918 1.48094 1.07257 1.59516 1.17839 1.18268 0.86314 0.77822 0.81971 1.90756 1.75478 1.43112 1.35944 1.20811 0.93598 0.98181 1.07933 1.23378 0.92084 0.94636 0.91416 1.68013 1.02648 1.32995 1.16170 1.19435 0.95133 0.89519 0.96347 1.21074 0.89639 1.01673 1.01171 1.21435 1.01511 0.92401 0.94650 1.21399 0.95924 0.97714 0.98122 1.21386 0.93157 0.98862 0.98082 1.19005 0.93987 0.96303 1.03394 1.22049 0.91619 0.98845 0.90116 1.22251 0.98432 0.98154 0.82512 1.22561 0.98724 0.99716 0.97282 1.20438 0.91301 0.95650 0.85498 0.92771 1.42610 1.76764 1.10898 1.06773 1.19637 1.33392 0.94431 0.88402 0.90290 1.25488 1.03319 0.96920 1.01298 1.69829 1.52211 1.11151 1.29120 0.85162 0.76555 0.78427 0.80194 1.18745 1.22638 1.22509 0.91994 0.94164 0.91663 0.89392 0.88860 0.80066 0.83682 0.81811 0.81985 0.83003 0.82872 0.88114 0.88945 0.94127 0.91427 0.79842 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.02 71.98 0.65 -3.41 16 2 C -0.10 -3.19 2.46 -10.71 -0.03 -3.22 16 3 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.13 3.34 5.72 86.36 0.49 3.84 16 5 N -0.60 -15.60 2.97 -821.58 -2.44 -18.04 16 6 C 0.57 16.06 7.31 86.76 0.63 16.69 16 7 O -0.57 -19.62 16.36 -3.94 -0.06 -19.69 16 8 C -0.20 -4.92 5.08 -20.00 -0.10 -5.02 16 9 C 0.16 3.54 8.55 85.42 0.73 4.27 16 10 N -0.49 -11.73 10.30 -187.68 -1.93 -13.66 16 11 C 0.12 2.56 6.61 40.27 0.27 2.83 16 12 C -0.12 -1.92 9.97 22.34 0.22 -1.70 16 13 C -0.08 -0.87 9.94 22.04 0.22 -0.65 16 14 C -0.11 -1.18 9.96 22.05 0.22 -0.96 16 15 C -0.10 -1.38 9.77 22.34 0.22 -1.17 16 16 C -0.12 -2.58 5.74 -21.28 -0.12 -2.70 16 17 C 0.00 0.00 9.55 23.01 0.22 0.22 16 18 C 0.11 2.61 4.95 86.51 0.43 3.04 16 19 C -0.14 -4.61 5.67 30.81 0.17 -4.43 16 20 C 0.18 6.53 2.19 45.02 0.10 6.63 16 21 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 22 N -0.73 -35.13 4.41 -322.82 -1.42 -36.56 16 23 C -0.23 -12.01 9.93 84.03 0.83 -11.18 16 24 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 25 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 26 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 27 Si 0.97 45.48 29.55 68.60 2.03 47.50 16 28 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 30 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 31 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.44 7.00 -2.38 -0.02 2.42 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.18 3.24 6.68 -2.91 -0.02 3.22 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 39 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.10 1.93 8.13 -2.39 -0.02 1.91 16 43 H 0.09 2.06 4.80 -2.39 -0.01 2.05 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.37 19.69 7.50 -92.71 -0.70 18.99 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -71.27 380.72 2.37 -68.90 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.29 Total: 31.12 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.63 Total: -0.85 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.51 Total: -126.99 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.27 2.37 -68.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036192222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.759 kcal (2) G-P(sol) polarization free energy of solvation -71.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds