Wall clock time and date at job start Tue Mar 31 2020 22:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.50177 * 2 1 4 4 C 1.53631 * 109.45709 * 120.20782 * 2 1 3 5 5 N 1.46924 * 108.54173 * 174.74191 * 4 2 1 6 6 C 1.34771 * 120.62823 * 126.36902 * 5 4 2 7 7 O 1.21564 * 119.99928 * 185.56702 * 6 5 4 8 8 C 1.47756 * 120.00308 * 5.56731 * 6 5 4 9 9 C 1.40597 * 120.26876 * 41.60634 * 8 6 5 10 10 N 1.30802 * 121.53947 * 179.97438 * 9 8 6 11 11 C 1.33821 * 121.72084 * 0.02683 * 10 9 8 12 12 C 1.40522 * 120.82652 * 180.02562 * 11 10 9 13 13 C 1.36126 * 119.81823 * 179.97438 * 12 11 10 14 14 C 1.39343 * 121.09033 * 359.95293 * 13 12 11 15 15 C 1.36138 * 120.83335 * 0.07088 * 14 13 12 16 16 C 1.40543 * 119.61617 * 359.95291 * 15 14 13 17 17 C 1.39013 * 120.26800 * 221.65490 * 8 6 5 18 18 C 1.46920 * 118.73922 * 306.09130 * 5 4 2 19 19 C 1.53198 * 108.77648 * 53.86205 * 18 5 4 20 20 C 1.53041 * 109.31222 * 305.36427 * 19 18 5 21 21 H 1.09001 * 109.45980 * 181.37058 * 20 19 18 22 22 N 1.46506 * 109.45969 * 301.34516 * 20 19 18 23 23 C 1.36932 * 119.99653 * 274.99872 * 22 20 19 24 24 H 1.07997 * 120.00252 * 0.02562 * 23 22 20 25 25 C 1.38820 * 119.99618 * 180.02562 * 23 22 20 26 26 N 1.31616 * 119.99847 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99950 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47262 * 59.99845 * 27 25 23 29 29 H 1.48498 * 109.47151 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.47153 * 300.00255 * 27 25 23 31 31 H 1.09008 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47580 * 300.06490 * 1 2 3 33 33 H 1.08997 * 109.46946 * 60.07142 * 1 2 3 34 34 H 1.08994 * 109.73939 * 55.00195 * 4 2 1 35 35 H 1.08995 * 109.66047 * 294.43572 * 4 2 1 36 36 H 1.08000 * 119.22976 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.08971 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.45807 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.58484 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.19457 * 180.23214 * 15 14 13 41 41 H 1.07997 * 121.02200 * 359.97438 * 17 8 6 42 42 H 1.08997 * 109.59080 * 173.65123 * 18 5 4 43 43 H 1.09005 * 109.58913 * 294.07549 * 18 5 4 44 44 H 1.09000 * 109.49696 * 65.31694 * 19 18 5 45 45 H 1.09004 * 109.49434 * 185.41443 * 19 18 5 46 46 H 0.97002 * 119.99927 * 95.00133 * 22 20 19 47 47 H 0.97001 * 119.99505 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0418 -0.7288 1.2519 5 7 3.5053 -0.8283 1.1690 6 6 4.2818 -0.3854 2.1776 7 8 5.4913 -0.3796 2.0561 8 6 3.6630 0.0933 3.4311 9 6 2.5765 -0.5987 3.9944 10 7 2.0103 -0.1974 5.1031 11 6 2.4351 0.8906 5.7563 12 6 1.8132 1.3046 6.9465 13 6 2.2625 2.4142 7.5944 14 6 3.3350 3.1525 7.0981 15 6 3.9632 2.7837 5.9480 16 6 3.5256 1.6436 5.2524 17 6 4.1498 1.2321 4.0624 18 6 4.1059 -1.4255 -0.0314 19 6 3.5709 -0.6940 -1.2666 20 6 2.0408 -0.7228 -1.2485 21 1 1.6577 -0.2241 -2.1389 22 7 1.5790 -2.1130 -1.2310 23 6 1.4476 -2.8057 -2.4049 24 1 1.6847 -2.3272 -3.3436 25 6 1.0095 -4.1228 -2.3883 26 7 0.7210 -4.7060 -1.2441 27 14 0.8294 -5.0675 -3.9896 28 1 2.1452 -5.1356 -4.6748 29 1 0.3489 -6.4427 -3.7017 30 1 -0.1494 -4.3748 -4.8656 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3633 0.5127 -0.8906 34 1 1.6096 -1.7283 1.2984 35 1 1.7636 -0.1664 2.1431 36 1 2.2011 -1.4828 3.5005 37 1 0.9811 0.7439 7.3460 38 1 1.7800 2.7274 8.5085 39 1 3.6718 4.0287 7.6322 40 1 4.7959 3.3613 5.5747 41 1 4.9828 1.7832 3.6517 42 1 5.1902 -1.3230 0.0128 43 1 3.8387 -2.4808 -0.0875 44 1 3.9154 0.3400 -1.2546 45 1 3.9335 -1.1885 -2.1677 46 1 1.3663 -2.5428 -0.3878 47 1 0.4145 -5.6262 -1.2326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036192223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:15 Heat of formation + Delta-G solvation = 37.389837 kcal Electronic energy + Delta-G solvation = -29451.514984 eV Core-core repulsion = 25599.368557 eV Total energy + Delta-G solvation = -3852.146426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.25308 -39.90194 -37.85226 -37.11832 -34.30572 -33.70020 -32.67072 -32.00610 -30.68999 -30.31884 -29.17053 -26.32470 -25.61230 -24.62576 -24.00460 -23.30302 -22.36702 -21.63266 -20.29774 -18.68545 -18.25093 -17.85670 -17.34175 -16.84818 -16.24226 -15.62895 -15.16620 -14.92141 -14.69379 -14.45425 -14.29652 -14.21105 -14.06185 -13.83185 -13.50426 -13.32089 -13.23221 -12.87568 -12.60161 -12.21034 -12.11661 -12.04011 -11.74938 -11.68890 -11.41741 -11.17304 -10.90115 -10.81564 -10.74934 -10.57185 -10.37035 -10.29889 -10.14169 -9.89049 -9.61811 -9.48497 -8.99396 -8.92693 -8.57445 -8.29591 -6.99819 -5.80794 -3.09066 0.03432 0.41106 1.64725 2.41381 2.93062 3.16632 3.41714 3.47081 3.47508 3.83626 4.00838 4.28238 4.38201 4.52649 4.56296 4.57253 4.70711 4.83287 4.93208 5.01951 5.18648 5.20638 5.34299 5.46876 5.56074 5.56791 5.59910 5.63364 5.70892 5.75812 5.78611 5.86979 5.89658 6.00899 6.04210 6.09803 6.18639 6.21381 6.31353 6.38117 6.46520 6.50477 6.55781 6.69991 6.74626 6.89317 6.94872 7.57513 7.64196 7.67271 8.22179 8.37837 9.49553 10.05084 10.40248 11.41614 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.002739 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.790931 B =10221.773023 C =10679.160101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.105 3.895 5 N -0.592 5.592 6 C 0.561 3.439 7 O -0.543 6.543 8 C -0.178 4.178 9 C 0.163 3.837 10 N -0.474 5.474 11 C 0.138 3.862 12 C -0.096 4.096 13 C -0.096 4.096 14 C -0.122 4.122 15 C -0.087 4.087 16 C -0.110 4.110 17 C -0.002 4.002 18 C 0.120 3.880 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.170 0.830 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.383 0.617 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 16.209 15.425 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.018 4.018 5 N -0.322 5.322 6 C 0.347 3.653 7 O -0.422 6.422 8 C -0.184 4.184 9 C -0.010 4.010 10 N -0.181 5.181 11 C 0.017 3.983 12 C -0.114 4.114 13 C -0.116 4.116 14 C -0.140 4.140 15 C -0.106 4.106 16 C -0.112 4.112 17 C -0.028 4.028 18 C -0.002 4.002 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.187 0.813 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.222 15.708 15.607 22.376 hybrid contribution 0.480 -0.336 -1.060 1.211 sum 3.702 15.371 14.547 21.485 Atomic orbital electron populations 1.21682 0.94053 1.03367 1.00505 1.21786 0.96561 0.98793 0.95636 0.91531 1.22218 0.78979 1.01960 0.98658 1.48055 1.07078 1.59092 1.18010 1.18007 0.86472 0.77916 0.82856 1.90767 1.13712 1.56100 1.81583 1.21005 0.99804 0.99044 0.98503 1.23312 0.89468 0.97896 0.90310 1.68030 1.29005 1.13274 1.07801 1.19040 0.92880 0.91298 0.95106 1.20847 1.00148 0.96981 0.93443 1.20967 0.96279 0.94582 0.99783 1.20929 0.96372 1.00252 0.96424 1.21050 0.99480 0.95034 0.95052 1.18804 0.98034 0.97834 0.96569 1.21836 0.96079 0.93351 0.91555 1.21646 0.97858 0.98196 0.82459 1.22526 1.00080 0.98768 0.97607 1.20223 0.90941 0.87354 0.94662 0.93035 1.42444 1.79054 1.07644 1.06905 1.19163 1.37333 0.93910 0.86537 0.91303 1.24695 1.02224 0.97152 0.96616 1.69625 1.51628 1.13133 1.23694 0.86311 0.77757 0.79204 0.83134 1.21356 1.21799 1.21384 0.90840 0.93853 0.92655 0.89779 0.90381 0.81337 0.84463 0.85174 0.85375 0.85004 0.83484 0.90167 0.89649 0.93357 0.90658 0.78170 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.06 37.16 0.34 -1.72 16 2 C -0.11 -1.64 2.68 -90.27 -0.24 -1.88 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.10 1.54 3.94 -3.48 -0.01 1.53 16 5 N -0.59 -9.37 2.97 -173.65 -0.51 -9.88 16 6 C 0.56 8.99 7.31 -12.37 -0.09 8.90 16 7 O -0.54 -10.21 16.37 5.31 0.09 -10.12 16 8 C -0.18 -2.44 5.08 -104.83 -0.53 -2.97 16 9 C 0.16 2.17 8.54 -17.10 -0.15 2.03 16 10 N -0.47 -6.40 10.30 -10.67 -0.11 -6.51 16 11 C 0.14 1.68 6.61 -84.79 -0.56 1.12 16 12 C -0.10 -0.93 9.97 -39.48 -0.39 -1.32 16 13 C -0.10 -0.71 9.94 -39.93 -0.40 -1.11 16 14 C -0.12 -0.87 9.96 -39.93 -0.40 -1.27 16 15 C -0.09 -0.74 9.77 -39.47 -0.39 -1.13 16 16 C -0.11 -1.24 5.74 -106.81 -0.61 -1.86 16 17 C 0.00 -0.02 9.55 -38.43 -0.37 -0.39 16 18 C 0.12 2.08 6.18 -3.71 -0.02 2.05 16 19 C -0.15 -2.54 5.78 -26.61 -0.15 -2.69 16 20 C 0.18 3.24 2.53 -67.88 -0.17 3.07 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.05 3.64 -53.38 -0.19 -16.24 16 23 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.65 13.06 55.49 0.72 -25.93 16 27 Si 0.90 21.69 29.55 -169.99 -5.02 16.66 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 31 H 0.07 1.28 7.54 -51.92 -0.39 0.89 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.36 6.62 -51.93 -0.34 1.02 16 35 H 0.08 1.02 4.79 -51.93 -0.25 0.77 16 36 H 0.17 2.12 6.69 -52.49 -0.35 1.76 16 37 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 43 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.38 9.06 5.92 -40.82 -0.24 8.82 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -30.70 376.78 -10.29 -40.99 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.54 Total: 9.67 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -4.40 Total: -4.31 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.09 Total: -58.56 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.70 -10.29 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036192223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.379 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds