Wall clock time and date at job start Tue Mar 31 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.50177 * 2 1 4 4 C 1.53631 * 109.45709 * 120.20782 * 2 1 3 5 5 N 1.46924 * 108.54173 * 174.74191 * 4 2 1 6 6 C 1.34771 * 120.62823 * 126.36902 * 5 4 2 7 7 O 1.21564 * 119.99928 * 185.56702 * 6 5 4 8 8 C 1.47756 * 120.00308 * 5.56731 * 6 5 4 9 9 C 1.40597 * 120.26876 * 41.60634 * 8 6 5 10 10 N 1.30802 * 121.53947 * 179.97438 * 9 8 6 11 11 C 1.33821 * 121.72084 * 0.02683 * 10 9 8 12 12 C 1.40522 * 120.82652 * 180.02562 * 11 10 9 13 13 C 1.36126 * 119.81823 * 179.97438 * 12 11 10 14 14 C 1.39343 * 121.09033 * 359.95293 * 13 12 11 15 15 C 1.36138 * 120.83335 * 0.07088 * 14 13 12 16 16 C 1.40543 * 119.61617 * 359.95291 * 15 14 13 17 17 C 1.39013 * 120.26800 * 221.65490 * 8 6 5 18 18 C 1.46920 * 118.73922 * 306.09130 * 5 4 2 19 19 C 1.53198 * 108.77648 * 53.86205 * 18 5 4 20 20 C 1.53041 * 109.31222 * 305.36427 * 19 18 5 21 21 H 1.09001 * 109.45980 * 181.37058 * 20 19 18 22 22 N 1.46506 * 109.45969 * 301.34516 * 20 19 18 23 23 C 1.36932 * 119.99653 * 274.99872 * 22 20 19 24 24 H 1.07997 * 120.00252 * 0.02562 * 23 22 20 25 25 C 1.38820 * 119.99618 * 180.02562 * 23 22 20 26 26 N 1.31616 * 119.99847 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99950 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47262 * 59.99845 * 27 25 23 29 29 H 1.48498 * 109.47151 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.47153 * 300.00255 * 27 25 23 31 31 H 1.09008 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47580 * 300.06490 * 1 2 3 33 33 H 1.08997 * 109.46946 * 60.07142 * 1 2 3 34 34 H 1.08994 * 109.73939 * 55.00195 * 4 2 1 35 35 H 1.08995 * 109.66047 * 294.43572 * 4 2 1 36 36 H 1.08000 * 119.22976 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.08971 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.45807 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.58484 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.19457 * 180.23214 * 15 14 13 41 41 H 1.07997 * 121.02200 * 359.97438 * 17 8 6 42 42 H 1.08997 * 109.59080 * 173.65123 * 18 5 4 43 43 H 1.09005 * 109.58913 * 294.07549 * 18 5 4 44 44 H 1.09000 * 109.49696 * 65.31694 * 19 18 5 45 45 H 1.09004 * 109.49434 * 185.41443 * 19 18 5 46 46 H 0.97002 * 119.99927 * 95.00133 * 22 20 19 47 47 H 0.97001 * 119.99505 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0418 -0.7288 1.2519 5 7 3.5053 -0.8283 1.1690 6 6 4.2818 -0.3854 2.1776 7 8 5.4913 -0.3796 2.0561 8 6 3.6630 0.0933 3.4311 9 6 2.5765 -0.5987 3.9944 10 7 2.0103 -0.1974 5.1031 11 6 2.4351 0.8906 5.7563 12 6 1.8132 1.3046 6.9465 13 6 2.2625 2.4142 7.5944 14 6 3.3350 3.1525 7.0981 15 6 3.9632 2.7837 5.9480 16 6 3.5256 1.6436 5.2524 17 6 4.1498 1.2321 4.0624 18 6 4.1059 -1.4255 -0.0314 19 6 3.5709 -0.6940 -1.2666 20 6 2.0408 -0.7228 -1.2485 21 1 1.6577 -0.2241 -2.1389 22 7 1.5790 -2.1130 -1.2310 23 6 1.4476 -2.8057 -2.4049 24 1 1.6847 -2.3272 -3.3436 25 6 1.0095 -4.1228 -2.3883 26 7 0.7210 -4.7060 -1.2441 27 14 0.8294 -5.0675 -3.9896 28 1 2.1452 -5.1356 -4.6748 29 1 0.3489 -6.4427 -3.7017 30 1 -0.1494 -4.3748 -4.8656 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3633 0.5127 -0.8906 34 1 1.6096 -1.7283 1.2984 35 1 1.7636 -0.1664 2.1431 36 1 2.2011 -1.4828 3.5005 37 1 0.9811 0.7439 7.3460 38 1 1.7800 2.7274 8.5085 39 1 3.6718 4.0287 7.6322 40 1 4.7959 3.3613 5.5747 41 1 4.9828 1.7832 3.6517 42 1 5.1902 -1.3230 0.0128 43 1 3.8387 -2.4808 -0.0875 44 1 3.9154 0.3400 -1.2546 45 1 3.9335 -1.1885 -2.1677 46 1 1.3663 -2.5428 -0.3878 47 1 0.4145 -5.6262 -1.2326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036192223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:14 Heat of formation + Delta-G solvation = 20.224595 kcal Electronic energy + Delta-G solvation = -29452.259325 eV Core-core repulsion = 25599.368557 eV Total energy + Delta-G solvation = -3852.890767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21843 -41.05956 -39.20159 -37.96662 -35.90495 -34.57894 -34.27058 -33.36012 -31.84547 -31.09898 -30.74503 -27.63107 -26.87868 -25.82234 -25.28085 -24.65415 -23.12159 -22.94359 -21.48478 -19.97336 -19.30417 -19.23061 -18.77393 -17.86936 -17.37747 -16.67107 -16.58519 -16.24269 -15.87009 -15.70023 -15.48810 -15.38289 -15.17084 -14.95189 -14.79035 -14.48630 -14.33536 -14.18218 -14.09546 -13.55684 -13.18710 -12.98455 -12.83863 -12.76682 -12.71620 -12.62960 -12.42758 -12.37853 -12.17113 -11.97424 -11.86249 -11.64008 -11.59571 -11.41097 -11.09223 -10.84882 -10.53970 -9.85943 -9.65738 -9.29477 -8.91675 -7.88065 -5.13639 -0.78471 -0.43168 0.85300 1.43521 1.50153 1.50923 1.56677 1.80739 2.04260 2.60335 3.00995 3.11289 3.33296 3.45854 3.54785 3.62840 3.74163 3.80769 3.88504 3.91708 4.06607 4.11544 4.23019 4.29188 4.33419 4.39352 4.42930 4.46954 4.55656 4.68613 4.69556 4.75510 4.82163 4.94706 4.96006 5.06071 5.08278 5.12900 5.14833 5.25728 5.30063 5.35983 5.40986 5.47292 5.49231 5.58589 5.62202 5.85504 6.29978 6.34141 6.73107 6.94755 7.42086 8.17734 8.41791 9.34830 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.002739 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.790931 B =10221.773023 C =10679.160101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.113 3.887 5 N -0.591 5.591 6 C 0.565 3.435 7 O -0.575 6.575 8 C -0.198 4.198 9 C 0.155 3.845 10 N -0.491 5.491 11 C 0.116 3.884 12 C -0.119 4.119 13 C -0.078 4.078 14 C -0.113 4.113 15 C -0.092 4.092 16 C -0.123 4.123 17 C 0.007 3.993 18 C 0.127 3.873 19 C -0.139 4.139 20 C 0.174 3.826 21 H 0.049 0.951 22 N -0.723 5.723 23 C -0.228 4.228 24 H 0.073 0.927 25 C -0.071 4.071 26 N -0.966 5.966 27 Si 0.962 3.038 28 H -0.283 1.283 29 H -0.301 1.301 30 H -0.281 1.281 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.375 0.625 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 19.685 17.149 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.010 4.010 5 N -0.321 5.321 6 C 0.354 3.646 7 O -0.456 6.456 8 C -0.203 4.203 9 C -0.019 4.019 10 N -0.199 5.199 11 C -0.005 4.005 12 C -0.137 4.137 13 C -0.098 4.098 14 C -0.130 4.130 15 C -0.111 4.111 16 C -0.125 4.125 17 C -0.019 4.019 18 C 0.005 3.995 19 C -0.180 4.180 20 C 0.065 3.935 21 H 0.067 0.933 22 N -0.364 5.364 23 C -0.361 4.361 24 H 0.091 0.909 25 C -0.264 4.264 26 N -0.617 5.617 27 Si 0.792 3.208 28 H -0.210 1.210 29 H -0.228 1.228 30 H -0.207 1.207 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.182 0.818 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.182 0.818 40 H 0.174 0.826 41 H 0.178 0.822 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.209 0.791 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.460 19.233 17.319 26.111 hybrid contribution 0.437 -1.217 -1.406 1.910 sum 3.896 18.016 15.913 24.351 Atomic orbital electron populations 1.21601 0.93598 1.01764 1.01933 1.21735 0.96835 0.99370 0.94028 0.89289 1.22174 0.78142 1.01216 0.99463 1.48027 1.07503 1.58908 1.17619 1.18324 0.85998 0.77026 0.83258 1.90737 1.15048 1.57529 1.82280 1.20742 1.00968 1.00601 0.98029 1.23191 0.89826 0.98061 0.90779 1.68011 1.29572 1.14335 1.07960 1.19472 0.93744 0.91250 0.96018 1.21056 1.00977 0.98439 0.93249 1.21433 0.95459 0.92851 1.00043 1.21414 0.95243 1.00735 0.95635 1.21392 1.00232 0.94130 0.95324 1.19006 0.97950 0.98921 0.96582 1.22053 0.95817 0.92514 0.91505 1.21396 0.97832 0.96732 0.83536 1.22390 0.98986 0.99796 0.96785 1.20427 0.91508 0.85360 0.96218 0.93257 1.42545 1.79036 1.09211 1.05615 1.19508 1.34877 0.93955 0.87711 0.90899 1.25356 1.03598 0.98364 0.99053 1.69774 1.53727 1.12882 1.25364 0.85384 0.77698 0.77493 0.80189 1.20955 1.22795 1.20732 0.93884 0.91344 0.92296 0.91752 0.88278 0.81794 0.84010 0.81803 0.81751 0.82576 0.82196 0.90331 0.92657 0.91131 0.91883 0.79103 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.06 71.98 0.65 -3.14 16 2 C -0.10 -2.95 2.68 -10.57 -0.03 -2.97 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.11 3.34 3.94 86.51 0.34 3.68 16 5 N -0.59 -19.01 2.97 -821.59 -2.44 -21.44 16 6 C 0.57 18.31 7.31 86.76 0.63 18.95 16 7 O -0.57 -21.88 16.37 -3.92 -0.06 -21.94 16 8 C -0.20 -5.42 5.08 -20.00 -0.10 -5.52 16 9 C 0.15 4.20 8.54 85.42 0.73 4.93 16 10 N -0.49 -13.32 10.30 -187.68 -1.93 -15.26 16 11 C 0.12 2.70 6.61 40.27 0.27 2.96 16 12 C -0.12 -2.05 9.97 22.34 0.22 -1.83 16 13 C -0.08 -0.84 9.94 22.04 0.22 -0.62 16 14 C -0.11 -1.07 9.96 22.05 0.22 -0.85 16 15 C -0.09 -1.23 9.77 22.34 0.22 -1.01 16 16 C -0.12 -2.53 5.74 -21.28 -0.12 -2.65 16 17 C 0.01 0.17 9.55 23.02 0.22 0.39 16 18 C 0.13 4.54 6.18 86.37 0.53 5.07 16 19 C -0.14 -4.71 5.78 30.67 0.18 -4.53 16 20 C 0.17 6.27 2.53 45.02 0.11 6.38 16 21 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 22 N -0.72 -33.10 3.64 -322.79 -1.17 -34.28 16 23 C -0.23 -11.93 9.93 84.04 0.83 -11.09 16 24 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 25 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 26 N -0.97 -57.17 13.06 21.65 0.28 -56.88 16 27 Si 0.96 45.45 29.55 68.60 2.03 47.48 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 29 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 30 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 31 H 0.04 1.51 7.54 -2.38 -0.02 1.49 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 2.19 6.62 -2.39 -0.02 2.18 16 35 H 0.10 2.58 4.79 -2.39 -0.01 2.56 16 36 H 0.17 4.39 6.69 -2.91 -0.02 4.37 16 37 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 39 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 40 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 42 H 0.08 2.82 7.00 -2.39 -0.02 2.81 16 43 H 0.06 2.30 7.74 -2.38 -0.02 2.29 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 46 H 0.38 18.50 5.92 -92.71 -0.55 17.95 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -68.47 376.78 2.74 -65.73 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.45 Total: 31.93 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.60 Total: 4.66 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -5.26 Total: -127.86 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -68.47 2.74 -65.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036192223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.955 kcal (2) G-P(sol) polarization free energy of solvation -68.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds