Wall clock time and date at job start Tue Mar 31 2020 22:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.50064 * 2 1 4 4 C 1.53195 * 109.49699 * 120.07046 * 2 1 3 5 5 N 1.46924 * 108.77365 * 174.58596 * 4 2 1 6 6 C 1.34778 * 120.63072 * 126.41152 * 5 4 2 7 7 O 1.21557 * 119.99785 * 354.12588 * 6 5 4 8 8 C 1.47881 * 120.00328 * 174.13140 * 6 5 4 9 9 C 1.40567 * 119.70986 * 138.38191 * 8 6 5 10 10 C 1.35818 * 120.73881 * 179.97438 * 9 8 6 11 11 C 1.40548 * 119.97829 * 0.02562 * 10 9 8 12 12 C 1.40826 * 121.13393 * 179.97438 * 11 10 9 13 13 C 1.36557 * 118.19847 * 180.08808 * 12 11 10 14 14 C 1.39420 * 119.93944 * 359.91920 * 13 12 11 15 15 N 1.31017 * 121.71169 * 0.05946 * 14 13 12 16 16 C 1.33743 * 121.35429 * 359.97438 * 15 14 13 17 17 C 1.38410 * 119.70166 * 318.10725 * 8 6 5 18 18 C 1.46918 * 118.74122 * 306.38339 * 5 4 2 19 19 C 1.53198 * 108.77592 * 53.61031 * 18 5 4 20 20 C 1.53039 * 109.33868 * 305.35364 * 19 18 5 21 21 H 1.09004 * 109.46021 * 301.35558 * 20 19 18 22 22 N 1.46504 * 109.45988 * 181.39970 * 20 19 18 23 23 C 1.36930 * 119.99930 * 84.99556 * 22 20 19 24 24 H 1.08002 * 120.00631 * 0.02562 * 23 22 20 25 25 C 1.38817 * 120.00156 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99420 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00281 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47200 * 90.00356 * 27 25 23 29 29 H 1.48506 * 109.47253 * 210.00280 * 27 25 23 30 30 H 1.48493 * 109.47376 * 330.00290 * 27 25 23 31 31 H 1.08993 * 109.46737 * 299.93475 * 1 2 3 32 32 H 1.09005 * 109.47035 * 59.93544 * 1 2 3 33 33 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.58684 * 54.79098 * 4 2 1 35 35 H 1.09005 * 109.69730 * 294.44181 * 4 2 1 36 36 H 1.07998 * 119.63402 * 359.96049 * 9 8 6 37 37 H 1.07992 * 120.01122 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.90037 * 0.02562 * 12 11 10 39 39 H 1.07992 * 120.02869 * 179.97438 * 13 12 11 40 40 H 1.08001 * 119.14127 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.23796 * 0.02562 * 17 8 6 42 42 H 1.08999 * 109.59194 * 293.82540 * 18 5 4 43 43 H 1.08996 * 109.59105 * 173.39613 * 18 5 4 44 44 H 1.09006 * 109.49324 * 65.31391 * 19 18 5 45 45 H 1.08995 * 109.50130 * 185.38117 * 19 18 5 46 46 H 0.97000 * 119.99636 * 264.99843 * 22 20 19 47 47 H 0.97007 * 120.00257 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 3.5046 -0.8289 1.1697 6 6 4.2811 -0.3860 2.1783 7 8 3.7810 0.2021 3.1173 8 6 5.7417 -0.6152 2.1427 9 6 6.6176 0.4100 2.5398 10 6 7.9625 0.2219 2.5158 11 6 8.4921 -1.0083 2.0900 12 6 9.8825 -1.2295 2.0549 13 6 10.3317 -2.4468 1.6292 14 6 9.4203 -3.4297 1.2461 15 7 8.1273 -3.2209 1.2802 16 6 7.6217 -2.0512 1.6863 17 6 6.2337 -1.8392 1.7240 18 6 4.1053 -1.4268 -0.0304 19 6 3.5708 -0.6955 -1.2659 20 6 2.0408 -0.7235 -1.2490 21 1 1.6966 -1.7577 -1.2357 22 7 1.5272 -0.0539 -2.4466 23 6 1.3964 -0.7510 -3.6178 24 1 1.6715 -1.7946 -3.6588 25 6 0.9092 -0.1168 -4.7524 26 7 0.5735 1.1549 -4.7024 27 14 0.7315 -1.0676 -6.3504 28 1 -0.6202 -1.6791 -6.4149 29 1 0.9120 -0.1436 -7.4989 30 1 1.7613 -2.1358 -6.4080 31 1 -0.3632 0.5128 0.8905 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6052 -1.7213 1.2984 35 1 1.7637 -0.1596 2.1403 36 1 6.2168 1.3578 2.8674 37 1 8.6247 1.0177 2.8230 38 1 10.5747 -0.4570 2.3557 39 1 11.3920 -2.6481 1.5903 40 1 9.7897 -4.3880 0.9119 41 1 5.5554 -2.6243 1.4240 42 1 3.8376 -2.4820 -0.0861 43 1 5.1895 -1.3247 0.0141 44 1 3.9159 0.3384 -1.2542 45 1 3.9339 -1.1901 -2.1668 46 1 1.2798 0.8833 -2.4097 47 1 0.2334 1.5984 -5.4953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036213894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:47 Heat of formation + Delta-G solvation = 35.800975 kcal Electronic energy + Delta-G solvation = -29022.871193 eV Core-core repulsion = 25170.655869 eV Total energy + Delta-G solvation = -3852.215325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.28073 -40.09382 -37.87127 -36.87106 -34.75149 -33.86026 -32.84922 -31.49744 -30.97154 -30.39420 -29.31439 -26.61045 -25.49272 -24.57879 -23.93193 -22.93023 -22.33562 -21.65887 -20.48078 -19.41659 -18.20224 -17.54443 -17.26255 -17.07121 -16.35172 -15.84703 -15.18802 -15.01591 -14.80015 -14.62227 -14.37070 -14.16346 -13.97436 -13.77392 -13.50342 -13.38840 -13.31670 -12.94799 -12.48247 -12.44927 -12.18047 -11.94134 -11.86552 -11.69207 -11.55786 -11.18003 -10.94340 -10.86885 -10.79567 -10.62634 -10.40793 -10.20067 -9.97098 -9.80274 -9.72378 -9.62262 -9.10065 -8.91834 -8.58143 -8.48712 -6.96921 -5.78122 -3.06726 -0.04110 0.38099 1.57943 2.29186 2.84306 3.08190 3.42085 3.47586 3.49000 3.76778 3.91837 4.20066 4.32752 4.44307 4.52752 4.57219 4.68655 4.75986 4.94288 5.06342 5.13203 5.24312 5.25258 5.34467 5.40328 5.50281 5.52528 5.56100 5.62230 5.68202 5.70744 5.77376 5.93176 5.94984 6.04357 6.07756 6.13688 6.15329 6.30970 6.36754 6.42727 6.43413 6.52415 6.62598 6.81111 6.91637 7.05057 7.42515 7.56351 7.68275 8.10902 8.40091 9.51579 10.08983 10.43955 11.44383 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012763 B = 0.002876 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.290290 B = 9734.999368 C =11184.605863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.557 3.443 7 O -0.539 6.539 8 C -0.100 4.100 9 C -0.070 4.070 10 C -0.101 4.101 11 C -0.090 4.090 12 C -0.060 4.060 13 C -0.171 4.171 14 C 0.130 3.870 15 N -0.466 5.466 16 C 0.118 3.882 17 C -0.055 4.055 18 C 0.097 3.903 19 C -0.151 4.151 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.256 -5.699 16.009 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.328 5.328 6 C 0.345 3.655 7 O -0.418 6.418 8 C -0.105 4.105 9 C -0.089 4.089 10 C -0.120 4.120 11 C -0.092 4.092 12 C -0.086 4.086 13 C -0.191 4.191 14 C -0.044 4.044 15 N -0.174 5.174 16 C -0.002 4.002 17 C -0.074 4.074 18 C -0.026 4.026 19 C -0.192 4.192 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.164 0.836 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.248 -6.112 16.092 24.368 hybrid contribution 0.592 0.456 -0.876 1.152 sum 17.840 -5.656 15.216 24.120 Atomic orbital electron populations 1.21657 0.94032 1.01795 1.01880 1.21753 0.96628 1.00092 0.94509 0.91178 1.21772 0.77833 1.01038 0.99605 1.48086 1.07301 1.59684 1.17727 1.18255 0.85944 0.78718 0.82569 1.90772 1.74747 1.41529 1.34714 1.19944 0.93869 0.95073 1.01625 1.20866 0.92624 0.98826 0.96579 1.20887 0.95316 0.95992 0.99814 1.18953 0.94296 0.95421 1.00513 1.21516 0.94023 0.97469 0.95598 1.21959 1.01671 0.94566 1.00892 1.23015 0.88246 0.99186 0.93938 1.68033 1.15308 1.20782 1.13297 1.18717 0.93640 0.89679 0.98179 1.21385 0.93395 0.96784 0.95822 1.22215 0.98312 0.97438 0.84634 1.22694 1.00377 1.00420 0.95744 1.20212 0.90297 0.95714 0.86424 0.93355 1.42401 1.76496 1.11381 1.05753 1.19216 1.35874 0.94065 0.87718 0.91229 1.24728 1.02096 0.96014 0.98050 1.69660 1.50032 1.09463 1.28895 0.86224 0.77788 0.78688 0.83685 1.21765 1.21857 1.20791 0.93792 0.90719 0.93025 0.91282 0.89180 0.84496 0.84578 0.84202 0.84364 0.82175 0.83584 0.91112 0.89856 0.92191 0.90477 0.78217 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.02 37.16 0.34 -1.87 16 2 C -0.11 -1.81 2.46 -90.46 -0.22 -2.04 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.75 5.73 -3.71 -0.02 1.72 16 5 N -0.60 -8.62 2.97 -173.87 -0.52 -9.13 16 6 C 0.56 8.39 7.28 -12.31 -0.09 8.30 16 7 O -0.54 -9.57 16.36 5.32 0.09 -9.48 16 8 C -0.10 -1.28 5.08 -105.01 -0.53 -1.81 16 9 C -0.07 -0.78 9.54 -39.57 -0.38 -1.16 16 10 C -0.10 -0.93 9.74 -39.58 -0.39 -1.32 16 11 C -0.09 -0.90 5.75 -106.72 -0.61 -1.51 16 12 C -0.06 -0.44 9.89 -39.21 -0.39 -0.83 16 13 C -0.17 -1.11 10.03 -39.75 -0.40 -1.51 16 14 C 0.13 1.06 11.15 -17.46 -0.19 0.86 16 15 N -0.47 -5.31 10.34 -10.98 -0.11 -5.43 16 16 C 0.12 1.39 6.60 -84.87 -0.56 0.83 16 17 C -0.05 -0.66 7.35 -38.68 -0.28 -0.94 16 18 C 0.10 1.33 4.91 -3.71 -0.02 1.31 16 19 C -0.15 -2.58 5.66 -26.61 -0.15 -2.73 16 20 C 0.18 3.47 2.20 -67.85 -0.15 3.32 16 21 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 22 N -0.72 -17.25 4.41 -53.35 -0.24 -17.49 16 23 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 27 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.42 7.37 -51.93 -0.38 1.04 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 36 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.15 1.68 6.71 -52.49 -0.35 1.33 16 42 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 43 H 0.08 1.07 4.84 -51.93 -0.25 0.82 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.38 9.95 7.51 -40.82 -0.31 9.64 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -32.69 380.72 -10.33 -43.02 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.69 Total: 9.02 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -4.30 Total: -6.32 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.14 Total: -59.01 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.69 -10.33 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.819 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds