Wall clock time and date at job start Tue Mar 31 2020 22:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.50064 * 2 1 4 4 C 1.53195 * 109.49699 * 120.07046 * 2 1 3 5 5 N 1.46924 * 108.77365 * 174.58596 * 4 2 1 6 6 C 1.34778 * 120.63072 * 126.41152 * 5 4 2 7 7 O 1.21557 * 119.99785 * 354.12588 * 6 5 4 8 8 C 1.47881 * 120.00328 * 174.13140 * 6 5 4 9 9 C 1.40567 * 119.70986 * 138.38191 * 8 6 5 10 10 C 1.35818 * 120.73881 * 179.97438 * 9 8 6 11 11 C 1.40548 * 119.97829 * 0.02562 * 10 9 8 12 12 C 1.40826 * 121.13393 * 179.97438 * 11 10 9 13 13 C 1.36557 * 118.19847 * 180.08808 * 12 11 10 14 14 C 1.39420 * 119.93944 * 359.91920 * 13 12 11 15 15 N 1.31017 * 121.71169 * 0.05946 * 14 13 12 16 16 C 1.33743 * 121.35429 * 359.97438 * 15 14 13 17 17 C 1.38410 * 119.70166 * 318.10725 * 8 6 5 18 18 C 1.46918 * 118.74122 * 306.38339 * 5 4 2 19 19 C 1.53198 * 108.77592 * 53.61031 * 18 5 4 20 20 C 1.53039 * 109.33868 * 305.35364 * 19 18 5 21 21 H 1.09004 * 109.46021 * 301.35558 * 20 19 18 22 22 N 1.46504 * 109.45988 * 181.39970 * 20 19 18 23 23 C 1.36930 * 119.99930 * 84.99556 * 22 20 19 24 24 H 1.08002 * 120.00631 * 0.02562 * 23 22 20 25 25 C 1.38817 * 120.00156 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99420 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00281 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47200 * 90.00356 * 27 25 23 29 29 H 1.48506 * 109.47253 * 210.00280 * 27 25 23 30 30 H 1.48493 * 109.47376 * 330.00290 * 27 25 23 31 31 H 1.08993 * 109.46737 * 299.93475 * 1 2 3 32 32 H 1.09005 * 109.47035 * 59.93544 * 1 2 3 33 33 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.58684 * 54.79098 * 4 2 1 35 35 H 1.09005 * 109.69730 * 294.44181 * 4 2 1 36 36 H 1.07998 * 119.63402 * 359.96049 * 9 8 6 37 37 H 1.07992 * 120.01122 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.90037 * 0.02562 * 12 11 10 39 39 H 1.07992 * 120.02869 * 179.97438 * 13 12 11 40 40 H 1.08001 * 119.14127 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.23796 * 0.02562 * 17 8 6 42 42 H 1.08999 * 109.59194 * 293.82540 * 18 5 4 43 43 H 1.08996 * 109.59105 * 173.39613 * 18 5 4 44 44 H 1.09006 * 109.49324 * 65.31391 * 19 18 5 45 45 H 1.08995 * 109.50130 * 185.38117 * 19 18 5 46 46 H 0.97000 * 119.99636 * 264.99843 * 22 20 19 47 47 H 0.97007 * 120.00257 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 3.5046 -0.8289 1.1697 6 6 4.2811 -0.3860 2.1783 7 8 3.7810 0.2021 3.1173 8 6 5.7417 -0.6152 2.1427 9 6 6.6176 0.4100 2.5398 10 6 7.9625 0.2219 2.5158 11 6 8.4921 -1.0083 2.0900 12 6 9.8825 -1.2295 2.0549 13 6 10.3317 -2.4468 1.6292 14 6 9.4203 -3.4297 1.2461 15 7 8.1273 -3.2209 1.2802 16 6 7.6217 -2.0512 1.6863 17 6 6.2337 -1.8392 1.7240 18 6 4.1053 -1.4268 -0.0304 19 6 3.5708 -0.6955 -1.2659 20 6 2.0408 -0.7235 -1.2490 21 1 1.6966 -1.7577 -1.2357 22 7 1.5272 -0.0539 -2.4466 23 6 1.3964 -0.7510 -3.6178 24 1 1.6715 -1.7946 -3.6588 25 6 0.9092 -0.1168 -4.7524 26 7 0.5735 1.1549 -4.7024 27 14 0.7315 -1.0676 -6.3504 28 1 -0.6202 -1.6791 -6.4149 29 1 0.9120 -0.1436 -7.4989 30 1 1.7613 -2.1358 -6.4080 31 1 -0.3632 0.5128 0.8905 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6052 -1.7213 1.2984 35 1 1.7637 -0.1596 2.1403 36 1 6.2168 1.3578 2.8674 37 1 8.6247 1.0177 2.8230 38 1 10.5747 -0.4570 2.3557 39 1 11.3920 -2.6481 1.5903 40 1 9.7897 -4.3880 0.9119 41 1 5.5554 -2.6243 1.4240 42 1 3.8376 -2.4820 -0.0861 43 1 5.1895 -1.3247 0.0141 44 1 3.9159 0.3384 -1.2542 45 1 3.9339 -1.1901 -2.1668 46 1 1.2798 0.8833 -2.4097 47 1 0.2334 1.5984 -5.4953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036213894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:46 Heat of formation + Delta-G solvation = 16.300446 kcal Electronic energy + Delta-G solvation = -29023.716800 eV Core-core repulsion = 25170.655869 eV Total energy + Delta-G solvation = -3853.060931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.11031 -41.14574 -39.17793 -37.74530 -36.27866 -34.82451 -34.20704 -33.10116 -31.76766 -31.20015 -30.98160 -27.79640 -26.93998 -25.69563 -24.82923 -24.23653 -23.29548 -22.98519 -21.64774 -20.73845 -19.17045 -18.99382 -18.40187 -17.99990 -17.37665 -16.88837 -16.71585 -16.26707 -15.74945 -15.62279 -15.47447 -15.33019 -15.24514 -14.97846 -14.92855 -14.40246 -14.28200 -14.00852 -13.92239 -13.69701 -13.22142 -13.05704 -13.00493 -12.86656 -12.78389 -12.64372 -12.52450 -12.46090 -12.14962 -12.11203 -11.85854 -11.69526 -11.51684 -11.17981 -11.12341 -10.84787 -10.47680 -9.89342 -9.72378 -9.30777 -8.96659 -7.91448 -5.19205 -0.75822 -0.33882 0.87653 1.39177 1.48435 1.49258 1.57426 1.78075 2.09821 2.57668 3.04686 3.12129 3.41403 3.45751 3.55091 3.76794 3.77324 3.82643 3.93394 3.97391 4.04409 4.05790 4.06742 4.24854 4.31064 4.33135 4.45832 4.56732 4.63516 4.69108 4.74407 4.75190 4.78920 4.86342 4.88020 4.92828 4.99536 5.09983 5.13064 5.20089 5.28079 5.33536 5.37975 5.46934 5.49177 5.54874 5.59344 5.77899 6.24122 6.29998 6.90756 6.94121 7.36429 8.11907 8.35656 9.32133 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012763 B = 0.002876 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.290290 B = 9734.999368 C =11184.605863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.125 3.875 5 N -0.597 5.597 6 C 0.558 3.442 7 O -0.572 6.572 8 C -0.116 4.116 9 C -0.094 4.094 10 C -0.084 4.084 11 C -0.104 4.104 12 C -0.060 4.060 13 C -0.162 4.162 14 C 0.128 3.872 15 N -0.504 5.504 16 C 0.096 3.904 17 C -0.061 4.061 18 C 0.109 3.891 19 C -0.141 4.141 20 C 0.181 3.819 21 H 0.051 0.949 22 N -0.731 5.731 23 C -0.231 4.231 24 H 0.077 0.923 25 C -0.077 4.077 26 N -0.971 5.971 27 Si 0.968 3.032 28 H -0.289 1.289 29 H -0.300 1.300 30 H -0.268 1.268 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.188 0.812 41 H 0.144 0.856 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.066 0.934 46 H 0.371 0.629 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.381 -7.392 16.904 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.070 0.930 4 C 0.003 3.997 5 N -0.328 5.328 6 C 0.347 3.653 7 O -0.453 6.453 8 C -0.121 4.121 9 C -0.112 4.112 10 C -0.103 4.103 11 C -0.107 4.107 12 C -0.085 4.085 13 C -0.182 4.182 14 C -0.045 4.045 15 N -0.213 5.213 16 C -0.024 4.024 17 C -0.081 4.081 18 C -0.013 4.013 19 C -0.182 4.182 20 C 0.072 3.928 21 H 0.069 0.931 22 N -0.370 5.370 23 C -0.362 4.362 24 H 0.095 0.905 25 C -0.269 4.269 26 N -0.622 5.622 27 Si 0.798 3.202 28 H -0.216 1.216 29 H -0.227 1.227 30 H -0.193 1.193 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.188 0.812 38 H 0.192 0.808 39 H 0.195 0.805 40 H 0.205 0.795 41 H 0.162 0.838 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.202 0.798 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.400 -7.853 17.013 27.700 hybrid contribution -0.194 0.901 -1.084 1.423 sum 20.206 -6.952 15.929 26.652 Atomic orbital electron populations 1.21571 0.93648 1.02168 1.01307 1.21615 0.96888 0.99052 0.94417 0.92952 1.21703 0.78160 1.01753 0.98075 1.48123 1.07252 1.59568 1.17868 1.18642 0.86966 0.77726 0.81962 1.90741 1.75587 1.43041 1.35911 1.19809 0.92459 0.96197 1.03605 1.20955 0.93555 0.98621 0.98106 1.21230 0.94802 0.96533 0.97700 1.19262 0.95706 0.95159 1.00540 1.21963 0.93102 0.98764 0.94712 1.22397 1.03329 0.93576 0.98877 1.23676 0.87611 1.00803 0.92434 1.68028 1.17160 1.21013 1.15086 1.18865 0.93715 0.90700 0.99091 1.21352 0.94088 0.96353 0.96269 1.22144 0.98850 0.97704 0.82605 1.22487 0.98777 0.99821 0.97139 1.20425 0.91287 0.95499 0.85599 0.93106 1.42575 1.76839 1.10835 1.06704 1.19594 1.33772 0.94376 0.88506 0.90475 1.25494 1.03158 0.96919 1.01299 1.69823 1.52034 1.11093 1.29262 0.85211 0.77860 0.77490 0.79654 1.21649 1.22680 1.19333 0.91580 0.94019 0.92121 0.89264 0.89335 0.84634 0.81198 0.80770 0.80519 0.79477 0.83842 0.89163 0.88654 0.93888 0.91525 0.79771 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.02 71.98 0.65 -3.56 16 2 C -0.10 -3.33 2.46 -10.69 -0.03 -3.36 16 3 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.13 3.59 5.73 86.36 0.49 4.09 16 5 N -0.60 -17.17 2.97 -822.28 -2.44 -19.62 16 6 C 0.56 17.00 7.28 86.80 0.63 17.64 16 7 O -0.57 -20.73 16.36 -3.89 -0.06 -20.80 16 8 C -0.12 -2.99 5.08 -20.11 -0.10 -3.09 16 9 C -0.09 -2.06 9.54 22.28 0.21 -1.84 16 10 C -0.08 -1.38 9.74 22.27 0.22 -1.16 16 11 C -0.10 -1.85 5.75 -21.23 -0.12 -1.97 16 12 C -0.06 -0.63 9.89 22.51 0.22 -0.41 16 13 C -0.16 -1.41 10.03 22.16 0.22 -1.19 16 14 C 0.13 1.70 11.15 85.10 0.95 2.65 16 15 N -0.50 -10.76 10.34 -188.65 -1.95 -12.71 16 16 C 0.10 2.16 6.60 40.25 0.27 2.43 16 17 C -0.06 -1.47 7.35 22.85 0.17 -1.30 16 18 C 0.11 2.94 4.91 86.37 0.42 3.37 16 19 C -0.14 -4.86 5.66 30.67 0.17 -4.69 16 20 C 0.18 6.88 2.20 45.04 0.10 6.98 16 21 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 22 N -0.73 -35.92 4.41 -322.69 -1.42 -37.35 16 23 C -0.23 -12.46 9.93 84.04 0.83 -11.62 16 24 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 25 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 26 N -0.97 -59.39 13.06 21.65 0.28 -59.10 16 27 Si 0.97 45.89 29.55 68.60 2.03 47.91 16 28 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 29 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 30 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.63 7.37 -2.38 -0.02 1.61 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 2.63 7.00 -2.38 -0.02 2.61 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.18 0.17 8.06 -2.91 -0.02 0.14 16 40 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.14 3.31 6.71 -2.91 -0.02 3.29 16 42 H 0.09 2.12 8.13 -2.39 -0.02 2.10 16 43 H 0.10 2.42 4.84 -2.39 -0.01 2.40 16 44 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.37 20.05 7.51 -92.71 -0.70 19.35 16 47 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -73.61 380.72 2.50 -71.11 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.29 Total: 31.49 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.78 Total: -0.94 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -5.53 Total: -128.78 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -73.61 2.50 -71.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.410 kcal (2) G-P(sol) polarization free energy of solvation -73.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds