Wall clock time and date at job start Tue Mar 31 2020 22:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50096 * 2 1 4 4 C 1.52765 * 109.59105 * 240.04015 * 2 1 3 5 5 N 1.46921 * 109.00580 * 185.53902 * 4 2 1 6 6 C 1.34778 * 120.63149 * 233.58484 * 5 4 2 7 7 O 1.21552 * 119.99572 * 5.57582 * 6 5 4 8 8 C 1.47883 * 120.00341 * 185.58183 * 6 5 4 9 9 C 1.40572 * 119.70759 * 221.96430 * 8 6 5 10 10 C 1.35807 * 120.73609 * 179.97438 * 9 8 6 11 11 C 1.40550 * 119.98551 * 359.97438 * 10 9 8 12 12 C 1.40816 * 121.13737 * 179.97438 * 11 10 9 13 13 C 1.36548 * 118.20038 * 180.02562 * 12 11 10 14 14 C 1.39416 * 119.94082 * 359.96060 * 13 12 11 15 15 N 1.31019 * 121.71294 * 0.02562 * 14 13 12 16 16 C 1.33751 * 121.34676 * 0.02562 * 15 14 13 17 17 C 1.38408 * 119.70518 * 41.91913 * 8 6 5 18 18 C 1.46929 * 118.74194 * 53.31326 * 5 4 2 19 19 C 1.53194 * 108.77131 * 306.64061 * 18 5 4 20 20 C 1.53040 * 109.49446 * 120.06208 * 2 1 3 21 21 H 1.08998 * 109.46517 * 61.32598 * 20 2 1 22 22 N 1.46507 * 109.45018 * 301.36027 * 20 2 1 23 23 C 1.36929 * 120.00026 * 154.94312 * 22 20 2 24 24 H 1.08001 * 120.00176 * 359.97438 * 23 22 20 25 25 C 1.38819 * 119.99937 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99937 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00145 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46883 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47233 * 119.99492 * 27 25 23 30 30 H 1.48498 * 109.46725 * 239.99988 * 27 25 23 31 31 H 1.08999 * 109.46696 * 299.94280 * 1 2 3 32 32 H 1.09001 * 109.46869 * 59.93448 * 1 2 3 33 33 H 1.08995 * 109.47106 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.50649 * 65.65648 * 4 2 1 35 35 H 1.08998 * 109.43042 * 305.37732 * 4 2 1 36 36 H 1.08003 * 119.62915 * 0.24570 * 9 8 6 37 37 H 1.08007 * 120.01022 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.90436 * 0.02562 * 12 11 10 39 39 H 1.08006 * 120.03238 * 179.97438 * 13 12 11 40 40 H 1.08000 * 119.15060 * 179.97438 * 14 13 12 41 41 H 1.07998 * 120.23590 * 0.06439 * 17 8 6 42 42 H 1.08999 * 109.58691 * 66.42639 * 18 5 4 43 43 H 1.09001 * 109.58634 * 186.85489 * 18 5 4 44 44 H 1.09003 * 109.49641 * 174.58558 * 19 18 5 45 45 H 1.09005 * 109.49776 * 294.68212 * 19 18 5 46 46 H 0.97004 * 119.99757 * 334.94011 * 22 20 2 47 47 H 0.96998 * 119.99807 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0423 -0.7187 -1.2469 5 7 3.5053 -0.8285 -1.1688 6 6 4.2820 -0.3848 -2.1770 7 8 3.7818 0.2027 -3.1162 8 6 5.7427 -0.6127 -2.1405 9 6 6.6182 0.4157 -2.5302 10 6 7.9632 0.2293 -2.5043 11 6 8.4936 -1.0026 -2.0841 12 6 9.8840 -1.2224 -2.0484 13 6 10.3339 -2.4421 -1.6307 14 6 9.4231 -3.4279 -1.2536 15 7 8.1299 -3.2202 -1.2877 16 6 7.6238 -2.0486 -1.6878 17 6 6.2357 -1.8365 -1.7222 18 6 4.1059 -1.4256 0.0318 19 6 3.5708 -0.6939 1.2667 20 6 2.0408 -0.7227 1.2486 21 1 1.6971 -1.7570 1.2357 22 7 1.5258 -0.0523 2.4452 23 6 1.3945 -0.7485 3.6170 24 1 1.6700 -1.7919 3.6590 25 6 0.9061 -0.1134 4.7506 26 7 0.5698 1.1581 4.6993 27 14 0.7261 -1.0632 6.3490 28 1 1.1688 -2.4658 6.1438 29 1 1.5625 -0.4283 7.3990 30 1 -0.6965 -1.0509 6.7746 31 1 -0.3633 0.5130 0.8905 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7653 -0.1499 -2.1344 35 1 1.6032 -1.7151 -1.2972 36 1 6.2168 1.3662 -2.8494 37 1 8.6251 1.0277 -2.8058 38 1 10.5760 -0.4474 -2.3434 39 1 11.3945 -2.6429 -1.5922 40 1 9.7930 -4.3882 -0.9257 41 1 5.5579 -2.6228 -1.4244 42 1 3.8386 -2.4809 0.0879 43 1 5.1902 -1.3230 -0.0125 44 1 3.9333 -1.1883 2.1680 45 1 3.9154 0.3401 1.2547 46 1 1.2780 0.8848 2.4073 47 1 0.2281 1.6018 5.4913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036213896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:56 Heat of formation + Delta-G solvation = 35.750646 kcal Electronic energy + Delta-G solvation = -29024.496133 eV Core-core repulsion = 25172.278626 eV Total energy + Delta-G solvation = -3852.217507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28239 -40.10086 -37.88548 -36.87342 -34.75326 -33.86215 -32.86283 -31.50288 -30.97297 -30.39550 -29.31580 -26.61537 -25.49418 -24.58129 -23.93552 -22.93120 -22.33646 -21.65964 -20.48876 -19.41532 -18.20333 -17.54590 -17.26337 -17.07284 -16.35342 -15.84773 -15.18926 -15.01979 -14.80128 -14.62193 -14.37508 -14.16701 -13.98159 -13.76894 -13.50504 -13.38876 -13.31986 -12.94934 -12.48566 -12.44657 -12.18103 -11.94475 -11.86736 -11.69304 -11.55993 -11.18302 -10.95667 -10.87275 -10.79696 -10.63352 -10.40651 -10.16791 -9.97167 -9.80405 -9.72592 -9.62395 -9.10189 -8.92443 -8.58260 -8.49036 -6.97012 -5.78411 -3.06967 -0.04089 0.38086 1.57954 2.29219 2.83865 3.08212 3.41658 3.47608 3.49634 3.76667 3.91888 4.20015 4.32696 4.44250 4.52710 4.57066 4.68600 4.75936 4.94195 5.06203 5.13165 5.24362 5.25450 5.34367 5.40186 5.50338 5.52543 5.56077 5.62067 5.68228 5.70715 5.77424 5.93115 5.94966 6.04336 6.07713 6.13609 6.15220 6.30777 6.36476 6.42651 6.43327 6.52401 6.62358 6.80929 6.91669 7.04796 7.42414 7.56260 7.68656 8.10849 8.39786 9.51391 10.08754 10.43707 11.44150 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.002874 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.963318 B = 9739.542224 C =11184.041132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.596 5.596 6 C 0.557 3.443 7 O -0.539 6.539 8 C -0.100 4.100 9 C -0.070 4.070 10 C -0.101 4.101 11 C -0.090 4.090 12 C -0.060 4.060 13 C -0.171 4.171 14 C 0.130 3.870 15 N -0.466 5.466 16 C 0.118 3.882 17 C -0.055 4.055 18 C 0.097 3.903 19 C -0.151 4.151 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.161 0.839 41 H 0.146 0.854 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.264 -5.713 -16.009 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.328 5.328 6 C 0.345 3.655 7 O -0.418 6.418 8 C -0.105 4.105 9 C -0.089 4.089 10 C -0.120 4.120 11 C -0.092 4.092 12 C -0.086 4.086 13 C -0.191 4.191 14 C -0.044 4.044 15 N -0.174 5.174 16 C -0.002 4.002 17 C -0.074 4.074 18 C -0.026 4.026 19 C -0.192 4.192 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.164 0.836 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.250 -6.139 -16.103 24.384 hybrid contribution 0.597 0.477 0.890 1.173 sum 17.847 -5.662 -15.214 24.125 Atomic orbital electron populations 1.21655 0.93988 1.01796 1.01905 1.21667 0.96663 1.00140 0.94569 0.91207 1.21680 0.77863 1.01061 0.99626 1.48089 1.07296 1.59656 1.17751 1.18254 0.85942 0.78693 0.82591 1.90771 1.74742 1.41552 1.34685 1.19945 0.93860 0.95083 1.01612 1.20864 0.92630 0.98801 0.96606 1.20886 0.95309 0.95996 0.99811 1.18948 0.94295 0.95389 1.00550 1.21511 0.94019 0.97485 0.95585 1.21957 1.01674 0.94531 1.00927 1.23015 0.88253 0.99208 0.93912 1.68040 1.15281 1.20860 1.13237 1.18718 0.93643 0.89635 0.98220 1.21384 0.93386 0.96812 0.95805 1.22217 0.98311 0.97458 0.84618 1.22695 1.00369 1.00415 0.95761 1.20201 0.90292 0.95721 0.86438 0.93343 1.42414 1.76427 1.11417 1.05792 1.19262 1.35720 0.94114 0.87701 0.91171 1.24731 1.02109 0.96023 0.98055 1.69669 1.50058 1.09486 1.28814 0.86156 0.77306 0.78893 0.84073 1.20568 1.21951 1.21927 0.90705 0.93780 0.93018 0.89186 0.91285 0.84502 0.84577 0.84201 0.84362 0.82177 0.83586 0.91099 0.89857 0.90471 0.92187 0.78216 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.03 37.16 0.34 -1.86 16 2 C -0.11 -1.82 2.44 -90.72 -0.22 -2.04 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.12 1.75 5.70 -3.93 -0.02 1.73 16 5 N -0.60 -8.61 2.98 -174.13 -0.52 -9.13 16 6 C 0.56 8.39 7.28 -12.31 -0.09 8.30 16 7 O -0.54 -9.57 16.36 5.32 0.09 -9.48 16 8 C -0.10 -1.28 5.07 -105.01 -0.53 -1.81 16 9 C -0.07 -0.78 9.54 -39.57 -0.38 -1.16 16 10 C -0.10 -0.93 9.74 -39.58 -0.39 -1.31 16 11 C -0.09 -0.90 5.75 -106.73 -0.61 -1.51 16 12 C -0.06 -0.44 9.88 -39.22 -0.39 -0.82 16 13 C -0.17 -1.11 10.03 -39.75 -0.40 -1.51 16 14 C 0.13 1.05 11.15 -17.46 -0.19 0.86 16 15 N -0.47 -5.31 10.34 -10.98 -0.11 -5.42 16 16 C 0.12 1.39 6.60 -84.87 -0.56 0.83 16 17 C -0.05 -0.66 7.34 -38.68 -0.28 -0.94 16 18 C 0.10 1.32 4.92 -3.71 -0.02 1.31 16 19 C -0.15 -2.58 5.66 -26.61 -0.15 -2.73 16 20 C 0.18 3.47 2.20 -67.88 -0.15 3.32 16 21 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 22 N -0.72 -17.24 4.41 -53.38 -0.24 -17.48 16 23 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 24 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 27 Si 0.90 22.06 29.55 -169.99 -5.02 17.03 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 31 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 40 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.15 1.68 6.72 -52.49 -0.35 1.33 16 42 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 43 H 0.08 1.07 4.84 -51.93 -0.25 0.81 16 44 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.38 9.94 7.50 -40.82 -0.31 9.63 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -32.70 380.67 -10.33 -43.03 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.69 Total: 8.96 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -4.30 Total: -6.31 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.14 Total: -58.97 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.70 -10.33 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.782 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds