Wall clock time and date at job start Tue Mar 31 2020 22:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50096 * 2 1 4 4 C 1.52765 * 109.59105 * 240.04015 * 2 1 3 5 5 N 1.46921 * 109.00580 * 185.53902 * 4 2 1 6 6 C 1.34778 * 120.63149 * 233.58484 * 5 4 2 7 7 O 1.21552 * 119.99572 * 5.57582 * 6 5 4 8 8 C 1.47883 * 120.00341 * 185.58183 * 6 5 4 9 9 C 1.40572 * 119.70759 * 221.96430 * 8 6 5 10 10 C 1.35807 * 120.73609 * 179.97438 * 9 8 6 11 11 C 1.40550 * 119.98551 * 359.97438 * 10 9 8 12 12 C 1.40816 * 121.13737 * 179.97438 * 11 10 9 13 13 C 1.36548 * 118.20038 * 180.02562 * 12 11 10 14 14 C 1.39416 * 119.94082 * 359.96060 * 13 12 11 15 15 N 1.31019 * 121.71294 * 0.02562 * 14 13 12 16 16 C 1.33751 * 121.34676 * 0.02562 * 15 14 13 17 17 C 1.38408 * 119.70518 * 41.91913 * 8 6 5 18 18 C 1.46929 * 118.74194 * 53.31326 * 5 4 2 19 19 C 1.53194 * 108.77131 * 306.64061 * 18 5 4 20 20 C 1.53040 * 109.49446 * 120.06208 * 2 1 3 21 21 H 1.08998 * 109.46517 * 61.32598 * 20 2 1 22 22 N 1.46507 * 109.45018 * 301.36027 * 20 2 1 23 23 C 1.36929 * 120.00026 * 154.94312 * 22 20 2 24 24 H 1.08001 * 120.00176 * 359.97438 * 23 22 20 25 25 C 1.38819 * 119.99937 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99937 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00145 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46883 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47233 * 119.99492 * 27 25 23 30 30 H 1.48498 * 109.46725 * 239.99988 * 27 25 23 31 31 H 1.08999 * 109.46696 * 299.94280 * 1 2 3 32 32 H 1.09001 * 109.46869 * 59.93448 * 1 2 3 33 33 H 1.08995 * 109.47106 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.50649 * 65.65648 * 4 2 1 35 35 H 1.08998 * 109.43042 * 305.37732 * 4 2 1 36 36 H 1.08003 * 119.62915 * 0.24570 * 9 8 6 37 37 H 1.08007 * 120.01022 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.90436 * 0.02562 * 12 11 10 39 39 H 1.08006 * 120.03238 * 179.97438 * 13 12 11 40 40 H 1.08000 * 119.15060 * 179.97438 * 14 13 12 41 41 H 1.07998 * 120.23590 * 0.06439 * 17 8 6 42 42 H 1.08999 * 109.58691 * 66.42639 * 18 5 4 43 43 H 1.09001 * 109.58634 * 186.85489 * 18 5 4 44 44 H 1.09003 * 109.49641 * 174.58558 * 19 18 5 45 45 H 1.09005 * 109.49776 * 294.68212 * 19 18 5 46 46 H 0.97004 * 119.99757 * 334.94011 * 22 20 2 47 47 H 0.96998 * 119.99807 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0423 -0.7187 -1.2469 5 7 3.5053 -0.8285 -1.1688 6 6 4.2820 -0.3848 -2.1770 7 8 3.7818 0.2027 -3.1162 8 6 5.7427 -0.6127 -2.1405 9 6 6.6182 0.4157 -2.5302 10 6 7.9632 0.2293 -2.5043 11 6 8.4936 -1.0026 -2.0841 12 6 9.8840 -1.2224 -2.0484 13 6 10.3339 -2.4421 -1.6307 14 6 9.4231 -3.4279 -1.2536 15 7 8.1299 -3.2202 -1.2877 16 6 7.6238 -2.0486 -1.6878 17 6 6.2357 -1.8365 -1.7222 18 6 4.1059 -1.4256 0.0318 19 6 3.5708 -0.6939 1.2667 20 6 2.0408 -0.7227 1.2486 21 1 1.6971 -1.7570 1.2357 22 7 1.5258 -0.0523 2.4452 23 6 1.3945 -0.7485 3.6170 24 1 1.6700 -1.7919 3.6590 25 6 0.9061 -0.1134 4.7506 26 7 0.5698 1.1581 4.6993 27 14 0.7261 -1.0632 6.3490 28 1 1.1688 -2.4658 6.1438 29 1 1.5625 -0.4283 7.3990 30 1 -0.6965 -1.0509 6.7746 31 1 -0.3633 0.5130 0.8905 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7653 -0.1499 -2.1344 35 1 1.6032 -1.7151 -1.2972 36 1 6.2168 1.3662 -2.8494 37 1 8.6251 1.0277 -2.8058 38 1 10.5760 -0.4474 -2.3434 39 1 11.3945 -2.6429 -1.5922 40 1 9.7930 -4.3882 -0.9257 41 1 5.5579 -2.6228 -1.4244 42 1 3.8386 -2.4809 0.0879 43 1 5.1902 -1.3230 -0.0125 44 1 3.9333 -1.1883 2.1680 45 1 3.9154 0.3401 1.2547 46 1 1.2780 0.8848 2.4073 47 1 0.2281 1.6018 5.4913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036213896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:54 Heat of formation + Delta-G solvation = 16.235455 kcal Electronic energy + Delta-G solvation = -29025.342375 eV Core-core repulsion = 25172.278626 eV Total energy + Delta-G solvation = -3853.063749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.11252 -41.15232 -39.19093 -37.74654 -36.27959 -34.83142 -34.21147 -33.10945 -31.76825 -31.20089 -30.98124 -27.80161 -26.94189 -25.69836 -24.82976 -24.23779 -23.29528 -22.98543 -21.65522 -20.73565 -19.17274 -18.99336 -18.40216 -18.00022 -17.37822 -16.89138 -16.71691 -16.26775 -15.75286 -15.62736 -15.47246 -15.32825 -15.24838 -14.98011 -14.93127 -14.40251 -14.28306 -14.00799 -13.92140 -13.69793 -13.21890 -13.05802 -13.00826 -12.88826 -12.79660 -12.64666 -12.52386 -12.46574 -12.12480 -12.08672 -11.85703 -11.69829 -11.51682 -11.18039 -11.12641 -10.85638 -10.47680 -9.89447 -9.72525 -9.30838 -8.96726 -7.91643 -5.19343 -0.75732 -0.33834 0.87736 1.39141 1.48202 1.48550 1.58202 1.77822 2.09835 2.57483 3.04647 3.12232 3.41368 3.45749 3.55125 3.76621 3.77789 3.82637 3.93229 3.97323 4.04513 4.05862 4.06681 4.24843 4.31068 4.33250 4.46036 4.56743 4.63456 4.69148 4.74458 4.75421 4.78905 4.86335 4.88032 4.92703 4.99429 5.09988 5.13173 5.20046 5.28065 5.33557 5.38049 5.46938 5.49184 5.55129 5.59296 5.77908 6.24075 6.29967 6.90732 6.94109 7.36378 8.11733 8.35464 9.32116 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.002874 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.963318 B = 9739.542224 C =11184.041132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.126 3.874 5 N -0.597 5.597 6 C 0.558 3.442 7 O -0.572 6.572 8 C -0.116 4.116 9 C -0.094 4.094 10 C -0.084 4.084 11 C -0.104 4.104 12 C -0.060 4.060 13 C -0.162 4.162 14 C 0.128 3.872 15 N -0.504 5.504 16 C 0.096 3.904 17 C -0.061 4.061 18 C 0.109 3.891 19 C -0.141 4.141 20 C 0.180 3.820 21 H 0.051 0.949 22 N -0.731 5.731 23 C -0.229 4.229 24 H 0.078 0.922 25 C -0.077 4.077 26 N -0.971 5.971 27 Si 0.967 3.033 28 H -0.264 1.264 29 H -0.297 1.297 30 H -0.297 1.297 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.188 0.812 41 H 0.144 0.856 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.042 0.958 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.384 -7.414 -16.911 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.070 0.930 4 C 0.003 3.997 5 N -0.328 5.328 6 C 0.347 3.653 7 O -0.453 6.453 8 C -0.121 4.121 9 C -0.112 4.112 10 C -0.103 4.103 11 C -0.107 4.107 12 C -0.085 4.085 13 C -0.182 4.182 14 C -0.045 4.045 15 N -0.213 5.213 16 C -0.024 4.024 17 C -0.081 4.081 18 C -0.013 4.013 19 C -0.182 4.182 20 C 0.072 3.928 21 H 0.069 0.931 22 N -0.370 5.370 23 C -0.361 4.361 24 H 0.095 0.905 25 C -0.269 4.269 26 N -0.622 5.622 27 Si 0.798 3.202 28 H -0.189 1.189 29 H -0.225 1.225 30 H -0.224 1.224 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.188 0.812 38 H 0.192 0.808 39 H 0.195 0.805 40 H 0.205 0.795 41 H 0.162 0.838 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.202 0.798 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.397 -7.889 -17.032 27.719 hybrid contribution -0.187 0.926 1.100 1.450 sum 20.210 -6.963 -15.932 26.660 Atomic orbital electron populations 1.21569 0.93602 1.02179 1.01323 1.21529 0.96926 0.99092 0.94466 0.92982 1.21611 0.78200 1.01773 0.98101 1.48126 1.07242 1.59538 1.17893 1.18642 0.86966 0.77701 0.81984 1.90740 1.75584 1.43068 1.35886 1.19810 0.92447 0.96208 1.03595 1.20953 0.93560 0.98584 0.98148 1.21230 0.94795 0.96554 0.97684 1.19257 0.95705 0.95122 1.00578 1.21958 0.93098 0.98795 0.94689 1.22395 1.03335 0.93544 0.98904 1.23675 0.87616 1.00840 0.92393 1.68035 1.17132 1.21082 1.15032 1.18866 0.93718 0.90656 0.99133 1.21351 0.94080 0.96380 0.96250 1.22149 0.98853 0.97723 0.82589 1.22489 0.98763 0.99822 0.97163 1.20415 0.91287 0.95502 0.85611 0.93096 1.42589 1.76766 1.10875 1.06734 1.19630 1.33589 0.94400 0.88480 0.90454 1.25493 1.03188 0.96931 1.01290 1.69827 1.52051 1.11110 1.29223 0.85148 0.76609 0.78359 0.80133 1.18866 1.22473 1.22432 0.94005 0.91573 0.92105 0.89355 0.89279 0.84640 0.81199 0.80771 0.80517 0.79477 0.83843 0.89154 0.88648 0.91489 0.93882 0.79766 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.03 71.98 0.65 -3.55 16 2 C -0.10 -3.34 2.44 -10.86 -0.03 -3.37 16 3 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.13 3.60 5.70 86.22 0.49 4.09 16 5 N -0.60 -17.16 2.98 -823.10 -2.45 -19.61 16 6 C 0.56 17.00 7.28 86.80 0.63 17.63 16 7 O -0.57 -20.74 16.36 -3.88 -0.06 -20.80 16 8 C -0.12 -2.98 5.07 -20.11 -0.10 -3.08 16 9 C -0.09 -2.06 9.54 22.28 0.21 -1.85 16 10 C -0.08 -1.38 9.74 22.27 0.22 -1.16 16 11 C -0.10 -1.85 5.75 -21.23 -0.12 -1.97 16 12 C -0.06 -0.63 9.88 22.51 0.22 -0.41 16 13 C -0.16 -1.41 10.03 22.16 0.22 -1.19 16 14 C 0.13 1.70 11.15 85.10 0.95 2.65 16 15 N -0.50 -10.75 10.34 -188.66 -1.95 -12.70 16 16 C 0.10 2.16 6.60 40.25 0.27 2.43 16 17 C -0.06 -1.47 7.34 22.85 0.17 -1.30 16 18 C 0.11 2.94 4.92 86.36 0.42 3.36 16 19 C -0.14 -4.86 5.66 30.67 0.17 -4.68 16 20 C 0.18 6.86 2.20 45.02 0.10 6.96 16 21 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 22 N -0.73 -35.88 4.41 -322.80 -1.42 -37.30 16 23 C -0.23 -12.36 9.93 84.04 0.83 -11.52 16 24 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 25 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 26 N -0.97 -59.35 13.06 21.65 0.28 -59.06 16 27 Si 0.97 45.89 29.55 68.60 2.03 47.91 16 28 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 30 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 31 H 0.04 1.64 7.36 -2.39 -0.02 1.62 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 2.62 7.00 -2.39 -0.02 2.61 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 40 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 41 H 0.14 3.31 6.72 -2.91 -0.02 3.29 16 42 H 0.09 2.12 8.13 -2.39 -0.02 2.10 16 43 H 0.10 2.41 4.84 -2.39 -0.01 2.40 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.37 20.03 7.50 -92.70 -0.70 19.33 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -73.62 380.67 2.49 -71.13 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.29 Total: 31.31 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.78 Total: -0.87 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.54 Total: -128.67 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -73.62 2.49 -71.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.365 kcal (2) G-P(sol) polarization free energy of solvation -73.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds