Wall clock time and date at job start Tue Mar 31 2020 22:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.49576 * 2 1 4 4 C 1.53191 * 109.49670 * 120.09510 * 2 1 3 5 5 N 1.46930 * 108.77359 * 174.58879 * 4 2 1 6 6 C 1.34774 * 120.63064 * 126.37434 * 5 4 2 7 7 O 1.21547 * 119.99910 * 354.23862 * 6 5 4 8 8 C 1.47882 * 119.99937 * 174.24303 * 6 5 4 9 9 C 1.40573 * 119.70656 * 323.39558 * 8 6 5 10 10 C 1.35817 * 120.73443 * 179.97438 * 9 8 6 11 11 C 1.40540 * 119.98570 * 0.02562 * 10 9 8 12 12 C 1.40815 * 121.13737 * 179.97438 * 11 10 9 13 13 C 1.36557 * 118.20353 * 180.02562 * 12 11 10 14 14 C 1.39427 * 119.93454 * 359.97438 * 13 12 11 15 15 N 1.31013 * 121.71267 * 359.97438 * 14 13 12 16 16 C 1.33751 * 121.35257 * 0.02562 * 15 14 13 17 17 C 1.38405 * 119.70640 * 143.12626 * 8 6 5 18 18 C 1.46928 * 118.73626 * 306.39003 * 5 4 2 19 19 C 1.53186 * 108.77682 * 53.61072 * 18 5 4 20 20 C 1.53040 * 109.49678 * 239.93591 * 2 1 3 21 21 H 1.08999 * 109.46262 * 58.67690 * 20 2 1 22 22 N 1.46501 * 109.45956 * 298.70098 * 20 2 1 23 23 C 1.36932 * 119.99835 * 155.00434 * 22 20 2 24 24 H 1.07999 * 120.00301 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00164 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99587 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00406 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46896 * 270.00225 * 27 25 23 29 29 H 1.48507 * 109.46803 * 29.99782 * 27 25 23 30 30 H 1.48488 * 109.47221 * 149.99866 * 27 25 23 31 31 H 1.09008 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47533 * 300.06292 * 1 2 3 33 33 H 1.09002 * 109.47504 * 60.06660 * 1 2 3 34 34 H 1.08996 * 109.59043 * 294.37353 * 4 2 1 35 35 H 1.09007 * 109.58524 * 54.80134 * 4 2 1 36 36 H 1.08001 * 119.63367 * 0.02562 * 9 8 6 37 37 H 1.08002 * 120.00389 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.90296 * 359.97438 * 12 11 10 39 39 H 1.07997 * 120.03700 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.14134 * 179.97438 * 14 13 12 41 41 H 1.07995 * 120.23778 * 0.02562 * 17 8 6 42 42 H 1.09004 * 109.58325 * 173.39625 * 18 5 4 43 43 H 1.08998 * 109.58615 * 293.81974 * 18 5 4 44 44 H 1.08997 * 109.50081 * 185.40913 * 19 18 5 45 45 H 1.09003 * 109.49598 * 65.30961 * 19 18 5 46 46 H 0.97002 * 120.00136 * 335.00151 * 22 20 2 47 47 H 0.97001 * 119.99999 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7241 1.2494 5 7 3.5046 -0.8294 1.1694 6 6 4.2811 -0.3862 2.1778 7 8 3.7807 0.2002 3.1176 8 6 5.7419 -0.6131 2.1409 9 6 6.2473 -1.8126 1.6100 10 6 7.5851 -2.0426 1.5653 11 6 8.4807 -1.0760 2.0539 12 6 9.8722 -1.2894 2.0200 13 6 10.6874 -0.3102 2.5113 14 6 10.1349 0.8613 3.0271 15 7 8.8398 1.0573 3.0563 16 6 7.9863 0.1385 2.5912 17 6 6.5996 0.3596 2.6243 18 6 4.1052 -1.4266 -0.0312 19 6 3.5708 -0.6947 -1.2662 20 6 2.0407 -0.7227 -1.2486 21 1 1.6583 -0.2237 -2.1390 22 7 1.5783 -2.1127 -1.2314 23 6 1.4482 -2.8055 -2.4053 24 1 1.6861 -2.3272 -3.3439 25 6 1.0095 -4.1224 -2.3891 26 7 0.7182 -4.7049 -1.2454 27 14 0.8313 -5.0674 -3.9906 28 1 -0.5404 -4.8779 -4.5271 29 1 1.8220 -4.5635 -4.9755 30 1 1.0707 -6.5117 -3.7424 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.7637 -0.1585 2.1388 35 1 1.6052 -1.7220 1.2975 36 1 5.5643 -2.5592 1.2325 37 1 7.9606 -2.9685 1.1552 38 1 10.2836 -2.2032 1.6172 39 1 11.7592 -0.4431 2.5002 40 1 10.7915 1.6272 3.4127 41 1 6.2054 1.2807 3.0274 42 1 5.1896 -1.3245 0.0134 43 1 3.8375 -2.4817 -0.0874 44 1 3.9334 -1.1890 -2.1674 45 1 3.9158 0.3392 -1.2539 46 1 1.3643 -2.5423 -0.3884 47 1 0.4120 -5.6253 -1.2340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036213897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:00 Heat of formation + Delta-G solvation = 41.132460 kcal Electronic energy + Delta-G solvation = -29371.927363 eV Core-core repulsion = 25519.943228 eV Total energy + Delta-G solvation = -3851.984134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18614 -40.04615 -37.89073 -36.86343 -34.35124 -33.73330 -32.92019 -31.45939 -30.85818 -30.26653 -29.20527 -26.68298 -25.42425 -24.39029 -23.92420 -23.38495 -22.36094 -21.67173 -20.37714 -18.69348 -18.27003 -17.35666 -17.23560 -17.00364 -16.24860 -15.62755 -15.16496 -14.82262 -14.65333 -14.52323 -14.42176 -14.11443 -14.00530 -13.86549 -13.38394 -13.32890 -13.31013 -12.94089 -12.56193 -12.30422 -12.09101 -12.00429 -11.73220 -11.50545 -11.27730 -11.19978 -10.94135 -10.81359 -10.79998 -10.50929 -10.46146 -10.22160 -9.86392 -9.81816 -9.68817 -9.57645 -9.01365 -8.90641 -8.51597 -8.25594 -7.01165 -5.82634 -3.11026 0.06779 0.44086 1.68210 2.37472 3.02314 3.23323 3.38745 3.44704 3.45976 3.87530 4.03233 4.30476 4.41552 4.54152 4.54312 4.60158 4.76048 4.86805 5.00024 5.19172 5.21951 5.29232 5.34642 5.49787 5.51511 5.55659 5.60779 5.65978 5.71667 5.80046 5.81118 5.91758 6.01920 6.04613 6.07822 6.13479 6.20797 6.24042 6.30373 6.37712 6.48538 6.50884 6.61836 6.66196 6.74354 6.90388 6.97832 7.61517 7.64562 7.65570 8.27930 8.35933 9.47651 10.04127 10.39468 11.39717 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.002984 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.023398 B = 9381.311841 C =10653.067953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.555 3.445 7 O -0.543 6.543 8 C -0.102 4.102 9 C -0.089 4.089 10 C -0.104 4.104 11 C -0.089 4.089 12 C -0.059 4.059 13 C -0.173 4.173 14 C 0.126 3.874 15 N -0.467 5.467 16 C 0.118 3.882 17 C -0.035 4.035 18 C 0.102 3.898 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.283 1.283 30 H -0.293 1.293 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.427 8.054 6.120 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.323 5.323 6 C 0.343 3.657 7 O -0.422 6.422 8 C -0.107 4.107 9 C -0.107 4.107 10 C -0.122 4.122 11 C -0.091 4.091 12 C -0.085 4.085 13 C -0.193 4.193 14 C -0.047 4.047 15 N -0.175 5.175 16 C -0.003 4.003 17 C -0.054 4.054 18 C -0.020 4.020 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.209 1.209 30 H -0.219 1.219 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.650 9.030 6.753 20.109 hybrid contribution 0.302 -1.631 -1.128 2.006 sum 16.952 7.399 5.625 19.332 Atomic orbital electron populations 1.21667 0.94158 1.03195 1.00489 1.21704 0.96549 0.98916 0.95665 0.91555 1.21707 0.78026 1.01714 0.98853 1.48020 1.07217 1.59317 1.17757 1.18226 0.85949 0.78877 0.82664 1.90760 1.74830 1.41954 1.34691 1.19942 0.93752 0.95705 1.01320 1.21307 0.96164 0.96657 0.96553 1.20905 0.92668 0.98754 0.99896 1.18952 0.94549 0.95540 1.00023 1.21526 0.91949 0.99211 0.95859 1.21942 1.01491 0.95219 1.00613 1.22985 0.91284 0.96019 0.94417 1.68017 1.03984 1.30445 1.15062 1.18728 0.93607 0.90381 0.97580 1.21116 0.89940 0.99132 0.95238 1.22189 0.97132 0.98974 0.83713 1.22537 1.00478 0.98724 0.97388 1.20220 0.90750 0.87354 0.94883 0.93090 1.42477 1.78982 1.07703 1.06936 1.19212 1.37173 0.93838 0.86570 0.91274 1.24700 1.02282 0.97207 0.96581 1.69646 1.51685 1.13090 1.23647 0.86244 0.77788 0.79353 0.83098 1.21832 1.20855 1.21903 0.91024 0.93718 0.92794 0.89614 0.90380 0.83804 0.84486 0.84170 0.84437 0.82312 0.83728 0.90149 0.89422 0.90657 0.93274 0.78105 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.05 37.16 0.34 -1.85 16 2 C -0.11 -1.76 2.67 -90.50 -0.24 -2.00 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.99 5.43 -3.71 -0.02 1.97 16 5 N -0.59 -9.56 2.97 -173.87 -0.52 -10.07 16 6 C 0.55 9.23 7.35 -12.31 -0.09 9.13 16 7 O -0.54 -10.54 16.24 5.32 0.09 -10.45 16 8 C -0.10 -1.45 5.24 -105.01 -0.55 -2.00 16 9 C -0.09 -1.08 7.24 -39.57 -0.29 -1.36 16 10 C -0.10 -1.07 9.74 -39.58 -0.39 -1.46 16 11 C -0.09 -0.97 5.75 -106.73 -0.61 -1.59 16 12 C -0.06 -0.49 9.88 -39.21 -0.39 -0.87 16 13 C -0.17 -1.24 10.03 -39.75 -0.40 -1.64 16 14 C 0.13 1.11 11.15 -17.46 -0.19 0.91 16 15 N -0.47 -5.75 10.34 -10.98 -0.11 -5.87 16 16 C 0.12 1.52 6.60 -84.87 -0.56 0.96 16 17 C -0.03 -0.48 9.57 -38.68 -0.37 -0.85 16 18 C 0.10 1.57 4.51 -3.71 -0.02 1.55 16 19 C -0.15 -2.44 5.78 -26.61 -0.15 -2.59 16 20 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.04 3.64 -53.38 -0.19 -16.23 16 23 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -26.49 13.06 55.49 0.72 -25.76 16 27 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 30 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 31 H 0.07 1.31 7.53 -51.92 -0.39 0.92 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.45 7.00 -51.93 -0.36 1.08 16 35 H 0.08 1.42 6.64 -51.93 -0.34 1.08 16 36 H 0.14 1.71 6.13 -52.49 -0.32 1.39 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.14 2.05 8.00 -52.49 -0.42 1.63 16 42 H 0.08 1.08 4.52 -51.93 -0.23 0.84 16 43 H 0.09 1.54 7.64 -51.93 -0.40 1.14 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.38 9.18 5.92 -40.82 -0.24 8.94 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -31.10 375.62 -10.21 -41.31 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.49 Total: 10.25 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -4.35 Total: -5.18 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.10 Total: -57.94 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.10 -10.21 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.440 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds