Wall clock time and date at job start Tue Mar 31 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.49576 * 2 1 4 4 C 1.53191 * 109.49670 * 120.09510 * 2 1 3 5 5 N 1.46930 * 108.77359 * 174.58879 * 4 2 1 6 6 C 1.34774 * 120.63064 * 126.37434 * 5 4 2 7 7 O 1.21547 * 119.99910 * 354.23862 * 6 5 4 8 8 C 1.47882 * 119.99937 * 174.24303 * 6 5 4 9 9 C 1.40573 * 119.70656 * 323.39558 * 8 6 5 10 10 C 1.35817 * 120.73443 * 179.97438 * 9 8 6 11 11 C 1.40540 * 119.98570 * 0.02562 * 10 9 8 12 12 C 1.40815 * 121.13737 * 179.97438 * 11 10 9 13 13 C 1.36557 * 118.20353 * 180.02562 * 12 11 10 14 14 C 1.39427 * 119.93454 * 359.97438 * 13 12 11 15 15 N 1.31013 * 121.71267 * 359.97438 * 14 13 12 16 16 C 1.33751 * 121.35257 * 0.02562 * 15 14 13 17 17 C 1.38405 * 119.70640 * 143.12626 * 8 6 5 18 18 C 1.46928 * 118.73626 * 306.39003 * 5 4 2 19 19 C 1.53186 * 108.77682 * 53.61072 * 18 5 4 20 20 C 1.53040 * 109.49678 * 239.93591 * 2 1 3 21 21 H 1.08999 * 109.46262 * 58.67690 * 20 2 1 22 22 N 1.46501 * 109.45956 * 298.70098 * 20 2 1 23 23 C 1.36932 * 119.99835 * 155.00434 * 22 20 2 24 24 H 1.07999 * 120.00301 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00164 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99587 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00406 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46896 * 270.00225 * 27 25 23 29 29 H 1.48507 * 109.46803 * 29.99782 * 27 25 23 30 30 H 1.48488 * 109.47221 * 149.99866 * 27 25 23 31 31 H 1.09008 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47533 * 300.06292 * 1 2 3 33 33 H 1.09002 * 109.47504 * 60.06660 * 1 2 3 34 34 H 1.08996 * 109.59043 * 294.37353 * 4 2 1 35 35 H 1.09007 * 109.58524 * 54.80134 * 4 2 1 36 36 H 1.08001 * 119.63367 * 0.02562 * 9 8 6 37 37 H 1.08002 * 120.00389 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.90296 * 359.97438 * 12 11 10 39 39 H 1.07997 * 120.03700 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.14134 * 179.97438 * 14 13 12 41 41 H 1.07995 * 120.23778 * 0.02562 * 17 8 6 42 42 H 1.09004 * 109.58325 * 173.39625 * 18 5 4 43 43 H 1.08998 * 109.58615 * 293.81974 * 18 5 4 44 44 H 1.08997 * 109.50081 * 185.40913 * 19 18 5 45 45 H 1.09003 * 109.49598 * 65.30961 * 19 18 5 46 46 H 0.97002 * 120.00136 * 335.00151 * 22 20 2 47 47 H 0.97001 * 119.99999 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7241 1.2494 5 7 3.5046 -0.8294 1.1694 6 6 4.2811 -0.3862 2.1778 7 8 3.7807 0.2002 3.1176 8 6 5.7419 -0.6131 2.1409 9 6 6.2473 -1.8126 1.6100 10 6 7.5851 -2.0426 1.5653 11 6 8.4807 -1.0760 2.0539 12 6 9.8722 -1.2894 2.0200 13 6 10.6874 -0.3102 2.5113 14 6 10.1349 0.8613 3.0271 15 7 8.8398 1.0573 3.0563 16 6 7.9863 0.1385 2.5912 17 6 6.5996 0.3596 2.6243 18 6 4.1052 -1.4266 -0.0312 19 6 3.5708 -0.6947 -1.2662 20 6 2.0407 -0.7227 -1.2486 21 1 1.6583 -0.2237 -2.1390 22 7 1.5783 -2.1127 -1.2314 23 6 1.4482 -2.8055 -2.4053 24 1 1.6861 -2.3272 -3.3439 25 6 1.0095 -4.1224 -2.3891 26 7 0.7182 -4.7049 -1.2454 27 14 0.8313 -5.0674 -3.9906 28 1 -0.5404 -4.8779 -4.5271 29 1 1.8220 -4.5635 -4.9755 30 1 1.0707 -6.5117 -3.7424 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.7637 -0.1585 2.1388 35 1 1.6052 -1.7220 1.2975 36 1 5.5643 -2.5592 1.2325 37 1 7.9606 -2.9685 1.1552 38 1 10.2836 -2.2032 1.6172 39 1 11.7592 -0.4431 2.5002 40 1 10.7915 1.6272 3.4127 41 1 6.2054 1.2807 3.0274 42 1 5.1896 -1.3245 0.0134 43 1 3.8375 -2.4817 -0.0874 44 1 3.9334 -1.1890 -2.1674 45 1 3.9158 0.3392 -1.2539 46 1 1.3643 -2.5423 -0.3884 47 1 0.4120 -5.6253 -1.2340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036213897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:58 Heat of formation + Delta-G solvation = 23.423363 kcal Electronic energy + Delta-G solvation = -29372.695287 eV Core-core repulsion = 25519.943228 eV Total energy + Delta-G solvation = -3852.752058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.12583 -41.20195 -39.25317 -37.84374 -35.91630 -34.56140 -34.44821 -33.02569 -31.75142 -31.13857 -30.90158 -27.92330 -26.84916 -25.48192 -25.26865 -24.59928 -23.22956 -23.03140 -21.52762 -19.98868 -19.40611 -19.21395 -18.11295 -17.91403 -17.40065 -16.77973 -16.63395 -16.19542 -15.94819 -15.66086 -15.47665 -15.34105 -15.19326 -14.89263 -14.87809 -14.45800 -14.33904 -14.20235 -13.92834 -13.57063 -13.20035 -13.02817 -12.98138 -12.84565 -12.73878 -12.65388 -12.44138 -12.38155 -12.09448 -11.93517 -11.87851 -11.58312 -11.56875 -11.18162 -11.06604 -10.82185 -10.49332 -9.84236 -9.65217 -9.33190 -8.90851 -7.86666 -5.12912 -0.75514 -0.37069 0.87157 1.40339 1.50980 1.52350 1.59542 1.82100 2.10619 2.61434 3.04957 3.16580 3.44338 3.47315 3.54976 3.78996 3.81278 3.87081 3.94243 4.01107 4.04432 4.06912 4.09140 4.25713 4.32750 4.37825 4.52166 4.56843 4.61933 4.68585 4.71158 4.82741 4.86629 4.88689 4.95197 5.01561 5.08561 5.12915 5.15148 5.20881 5.27593 5.28958 5.31288 5.46353 5.49600 5.60101 5.62733 5.76966 6.32055 6.34922 6.90586 6.96476 7.42821 8.17824 8.42578 9.36434 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.002984 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.023398 B = 9381.311841 C =10653.067953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.123 3.877 5 N -0.591 5.591 6 C 0.554 3.446 7 O -0.579 6.579 8 C -0.114 4.114 9 C -0.107 4.107 10 C -0.083 4.083 11 C -0.101 4.101 12 C -0.058 4.058 13 C -0.161 4.161 14 C 0.128 3.872 15 N -0.509 5.509 16 C 0.098 3.902 17 C -0.049 4.049 18 C 0.110 3.890 19 C -0.144 4.144 20 C 0.174 3.826 21 H 0.048 0.952 22 N -0.723 5.723 23 C -0.225 4.225 24 H 0.075 0.925 25 C -0.071 4.071 26 N -0.968 5.968 27 Si 0.962 3.038 28 H -0.295 1.295 29 H -0.270 1.270 30 H -0.301 1.301 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.143 0.857 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.190 0.810 41 H 0.127 0.873 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.074 8.338 5.156 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 H 0.100 0.900 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.344 3.656 7 O -0.461 6.461 8 C -0.119 4.119 9 C -0.126 4.126 10 C -0.102 4.102 11 C -0.103 4.103 12 C -0.084 4.084 13 C -0.181 4.181 14 C -0.045 4.045 15 N -0.218 5.218 16 C -0.022 4.022 17 C -0.069 4.069 18 C -0.011 4.011 19 C -0.184 4.184 20 C 0.065 3.935 21 H 0.066 0.934 22 N -0.364 5.364 23 C -0.357 4.357 24 H 0.093 0.907 25 C -0.264 4.264 26 N -0.619 5.619 27 Si 0.793 3.207 28 H -0.223 1.223 29 H -0.195 1.195 30 H -0.228 1.228 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.160 0.840 37 H 0.189 0.811 38 H 0.194 0.806 39 H 0.197 0.803 40 H 0.207 0.793 41 H 0.145 0.855 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.321 9.354 5.755 23.099 hybrid contribution -0.619 -1.590 -0.757 1.867 sum 19.702 7.764 4.998 21.759 Atomic orbital electron populations 1.21598 0.93840 1.01644 1.01798 1.21629 0.96758 0.99203 0.94293 0.89974 1.21575 0.78684 1.00593 0.99090 1.48032 1.06882 1.59138 1.18010 1.18665 0.87125 0.77935 0.81902 1.90725 1.75786 1.43652 1.35899 1.19736 0.91903 0.97031 1.03202 1.21266 0.97237 0.95975 0.98087 1.21264 0.91641 0.99469 0.97778 1.19229 0.96360 0.94798 0.99931 1.21981 0.90440 1.00787 0.95189 1.22413 1.03533 0.93759 0.98350 1.23702 0.90471 0.97446 0.92848 1.68014 1.05606 1.31238 1.16912 1.18800 0.93165 0.91702 0.98551 1.21040 0.91081 0.98690 0.96070 1.22132 0.98586 0.97375 0.83029 1.22425 0.98533 0.99966 0.97498 1.20411 0.92128 0.85317 0.95654 0.93395 1.42567 1.79066 1.09115 1.05673 1.19542 1.34729 0.93798 0.87625 0.90749 1.25359 1.03582 0.98421 0.99015 1.69797 1.53809 1.12881 1.25421 0.85299 0.77527 0.77596 0.80277 1.22309 1.19454 1.22818 0.93896 0.91757 0.92143 0.89850 0.92366 0.83952 0.81102 0.80620 0.80280 0.79302 0.85469 0.87634 0.91683 0.91018 0.91324 0.79218 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.05 71.98 0.65 -3.52 16 2 C -0.10 -3.21 2.67 -10.72 -0.03 -3.24 16 3 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.12 4.26 5.43 86.36 0.47 4.73 16 5 N -0.59 -19.54 2.97 -822.27 -2.44 -21.98 16 6 C 0.55 19.14 7.35 86.80 0.64 19.78 16 7 O -0.58 -23.59 16.24 -3.86 -0.06 -23.65 16 8 C -0.11 -3.32 5.24 -20.11 -0.11 -3.42 16 9 C -0.11 -2.55 7.24 22.28 0.16 -2.39 16 10 C -0.08 -1.52 9.74 22.27 0.22 -1.31 16 11 C -0.10 -1.97 5.75 -21.23 -0.12 -2.10 16 12 C -0.06 -0.69 9.88 22.51 0.22 -0.47 16 13 C -0.16 -1.54 10.03 22.16 0.22 -1.32 16 14 C 0.13 1.85 11.15 85.10 0.95 2.80 16 15 N -0.51 -12.04 10.34 -188.64 -1.95 -13.99 16 16 C 0.10 2.48 6.60 40.25 0.27 2.75 16 17 C -0.05 -1.42 9.57 22.85 0.22 -1.20 16 18 C 0.11 3.41 4.51 86.36 0.39 3.80 16 19 C -0.14 -4.54 5.78 30.67 0.18 -4.36 16 20 C 0.17 6.30 2.53 45.02 0.11 6.41 16 21 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 22 N -0.72 -32.80 3.64 -322.81 -1.18 -33.98 16 23 C -0.22 -11.47 9.93 84.03 0.83 -10.64 16 24 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 25 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 26 N -0.97 -56.48 13.06 21.65 0.28 -56.19 16 27 Si 0.96 44.33 29.55 68.60 2.03 46.36 16 28 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 30 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 31 H 0.04 1.61 7.53 -2.38 -0.02 1.59 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 2.92 7.00 -2.39 -0.02 2.91 16 35 H 0.06 2.25 6.64 -2.38 -0.02 2.24 16 36 H 0.14 3.36 6.13 -2.91 -0.02 3.34 16 37 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.13 3.95 8.00 -2.91 -0.02 3.92 16 42 H 0.11 2.76 4.52 -2.38 -0.01 2.75 16 43 H 0.06 2.33 7.64 -2.39 -0.02 2.32 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.37 18.56 5.92 -92.71 -0.55 18.01 16 47 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -70.43 375.62 2.87 -67.56 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.45 Total: 33.00 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 5.74 Total: 2.88 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -5.29 Total: -126.15 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -70.43 2.87 -67.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.988 kcal (2) G-P(sol) polarization free energy of solvation -70.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds