Wall clock time and date at job start Tue Mar 31 2020 22:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.53090 * 2 1 4 4 C 1.53201 * 109.49515 * 239.92226 * 2 1 3 5 5 N 1.46925 * 108.77334 * 185.41835 * 4 2 1 6 6 C 1.34776 * 120.62663 * 233.59077 * 5 4 2 7 7 O 1.21585 * 120.00394 * 355.79988 * 6 5 4 8 8 C 1.47573 * 119.99905 * 175.80678 * 6 5 4 9 9 C 1.38709 * 120.43469 * 54.75911 * 8 6 5 10 10 C 1.38996 * 120.74885 * 180.02562 * 9 8 6 11 11 C 1.36336 * 121.19440 * 359.97438 * 10 9 8 12 12 C 1.40355 * 119.92892 * 359.97438 * 11 10 9 13 13 C 1.40687 * 122.10165 * 179.97438 * 12 11 10 14 14 C 1.36261 * 118.66493 * 179.97438 * 13 12 11 15 15 N 1.32505 * 121.84241 * 0.02571 * 14 13 12 16 16 C 1.31317 * 122.72002 * 359.97438 * 15 14 13 17 17 C 1.40136 * 119.91829 * 359.73648 * 16 15 14 18 18 C 1.46918 * 118.74280 * 53.60621 * 5 4 2 19 19 C 1.53196 * 108.77684 * 306.39131 * 18 5 4 20 20 C 1.53042 * 109.49648 * 120.08576 * 2 1 3 21 21 H 1.09007 * 109.46099 * 61.29756 * 20 2 1 22 22 N 1.46493 * 109.46351 * 301.33458 * 20 2 1 23 23 C 1.36927 * 120.00457 * 154.93088 * 22 20 2 24 24 H 1.08000 * 119.99908 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00363 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00145 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 119.99610 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.46845 * 90.00311 * 27 25 23 29 29 H 1.48502 * 109.46719 * 209.99744 * 27 25 23 30 30 H 1.48501 * 109.47469 * 329.99964 * 27 25 23 31 31 H 1.09001 * 109.47106 * 299.91928 * 1 2 3 32 32 H 1.08998 * 109.47020 * 59.91089 * 1 2 3 33 33 H 1.08998 * 109.47352 * 179.91527 * 1 2 3 34 34 H 1.09001 * 109.58293 * 65.62991 * 4 2 1 35 35 H 1.09000 * 109.70059 * 305.27032 * 4 2 1 36 36 H 1.07997 * 119.62090 * 359.97438 * 9 8 6 37 37 H 1.08002 * 119.40010 * 179.97438 * 10 9 8 38 38 H 1.08002 * 120.03671 * 179.97438 * 11 10 9 39 39 H 1.07996 * 120.66830 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.08030 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.04159 * 180.02562 * 16 15 14 42 42 H 1.09004 * 109.59318 * 186.60299 * 18 5 4 43 43 H 1.08997 * 109.58550 * 66.17869 * 18 5 4 44 44 H 1.08992 * 109.50138 * 294.68342 * 19 18 5 45 45 H 1.08999 * 109.52311 * 174.59912 * 19 18 5 46 46 H 0.97003 * 119.99686 * 334.93854 * 22 20 2 47 47 H 0.96996 * 119.99591 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 3.5045 -0.8292 -1.1697 6 6 4.2810 -0.3864 -2.1783 7 8 3.7709 0.0356 -3.1981 8 6 5.7505 -0.4138 -2.0450 9 6 6.4055 -1.5953 -1.7304 10 6 7.7892 -1.6285 -1.6027 11 6 8.5420 -0.5061 -1.7825 12 6 7.9199 0.7105 -2.1031 13 6 8.6519 1.8960 -2.2980 14 6 7.9762 3.0380 -2.6075 15 7 6.6568 3.0588 -2.7280 16 6 5.9118 1.9906 -2.5598 17 6 6.5105 0.7634 -2.2447 18 6 4.1052 -1.4268 0.0306 19 6 3.5708 -0.6952 1.2659 20 6 2.0408 -0.7232 1.2483 21 1 1.6967 -1.7575 1.2352 22 7 1.5266 -0.0532 2.4453 23 6 1.3951 -0.7499 3.6167 24 1 1.6702 -1.7934 3.6582 25 6 0.9074 -0.1151 4.7509 26 7 0.7815 -0.7846 5.8770 27 14 0.4310 1.6897 4.6790 28 1 -0.9998 1.8092 4.2997 29 1 0.6436 2.3111 6.0108 30 1 1.2705 2.3835 3.6693 31 1 -0.3633 0.5126 0.8907 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3634 -1.0276 -0.0015 34 1 1.7637 -0.1578 -2.1389 35 1 1.6053 -1.7215 -1.3007 36 1 5.8338 -2.4995 -1.5821 37 1 8.2767 -2.5603 -1.3566 38 1 9.6160 -0.5531 -1.6784 39 1 9.7278 1.9008 -2.2041 40 1 8.5315 3.9518 -2.7590 41 1 4.8394 2.0567 -2.6689 42 1 5.1895 -1.3249 -0.0139 43 1 3.8374 -2.4819 0.0865 44 1 3.9159 0.3386 1.2541 45 1 3.9334 -1.1895 2.1672 46 1 1.2791 0.8840 2.4079 47 1 0.4404 -0.3411 6.6693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036241248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:01 Heat of formation + Delta-G solvation = 38.323662 kcal Electronic energy + Delta-G solvation = -29552.285062 eV Core-core repulsion = 25700.179130 eV Total energy + Delta-G solvation = -3852.105933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41425 -39.99880 -37.92376 -37.43012 -34.84866 -33.49603 -32.73126 -31.61754 -31.54848 -30.19265 -29.81342 -26.70695 -25.55777 -24.54975 -23.87649 -23.33148 -22.41083 -21.60831 -20.21381 -19.42178 -18.43007 -17.67619 -17.42974 -17.11954 -16.56455 -16.09487 -15.20421 -15.02362 -14.92491 -14.69218 -14.45091 -14.35721 -14.01120 -13.86996 -13.73285 -13.36957 -13.15433 -12.86741 -12.61386 -12.55567 -12.31208 -12.26816 -11.90480 -11.82308 -11.79909 -11.47302 -11.07882 -10.94439 -10.75726 -10.58842 -10.48260 -10.27799 -9.95534 -9.81732 -9.70154 -9.62427 -9.44620 -8.96908 -8.67721 -8.35358 -7.31562 -5.81854 -3.17339 -0.11300 0.57301 1.41298 2.42261 2.68069 2.95692 3.34393 3.37760 3.42905 3.77150 4.07427 4.19590 4.34083 4.42567 4.50057 4.55071 4.61607 4.76671 4.91979 4.96554 4.99280 5.09124 5.19199 5.23810 5.34703 5.39509 5.42394 5.47186 5.56348 5.57440 5.63559 5.68097 5.79046 5.86355 5.90839 5.97193 6.00482 6.05711 6.22042 6.23508 6.26853 6.35284 6.41989 6.44456 6.63523 6.71342 6.89109 7.28391 7.73743 7.93405 7.96873 8.37308 9.15442 9.88376 10.08137 11.36407 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.003132 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.776132 B = 8937.618658 C = 9172.426945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.558 3.442 7 O -0.536 6.536 8 C -0.085 4.085 9 C -0.085 4.085 10 C -0.100 4.100 11 C -0.095 4.095 12 C -0.026 4.026 13 C -0.158 4.158 14 C 0.078 3.922 15 N -0.485 5.485 16 C 0.157 3.843 17 C -0.081 4.081 18 C 0.097 3.903 19 C -0.152 4.152 20 C 0.189 3.811 21 H 0.058 0.942 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.167 0.833 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.496 -0.822 -17.883 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.345 3.655 7 O -0.414 6.414 8 C -0.090 4.090 9 C -0.104 4.104 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.031 4.031 13 C -0.177 4.177 14 C -0.065 4.065 15 N -0.193 5.193 16 C -0.014 4.014 17 C -0.083 4.083 18 C -0.026 4.026 19 C -0.193 4.193 20 C 0.079 3.921 21 H 0.076 0.924 22 N -0.387 5.387 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.711 3.289 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.921 0.090 -18.419 23.705 hybrid contribution 0.212 0.451 0.540 0.735 sum 15.133 0.541 -17.879 23.430 Atomic orbital electron populations 1.21665 0.93949 1.02226 1.01649 1.21804 0.96708 1.00104 0.94850 0.91228 1.21758 0.77839 1.01290 0.99282 1.48125 1.07264 1.59405 1.17855 1.18156 0.86056 0.77806 0.83435 1.90805 1.74780 1.47289 1.28539 1.19872 0.93335 0.94091 1.01744 1.21419 0.94942 0.97266 0.96783 1.20919 0.93375 0.99032 0.98635 1.21120 1.00349 0.91433 0.98431 1.18114 0.92132 0.94767 0.98063 1.21910 1.01046 0.92747 1.02042 1.22280 0.90156 0.98091 0.96013 1.67520 1.07194 1.31146 1.13465 1.23361 1.00586 0.86473 0.90947 1.18718 0.93183 0.94711 1.01723 1.22149 0.98501 0.97516 0.84431 1.22657 0.99936 1.00494 0.96221 1.20173 0.90437 0.96069 0.85425 0.92411 1.42771 1.78171 1.10073 1.07644 1.19039 1.36434 0.95671 0.86134 0.89198 1.24650 1.01300 0.97365 0.95610 1.69694 1.51996 1.35721 1.00674 0.86608 0.78621 0.86789 0.76846 1.21015 1.21777 1.20374 0.91405 0.93452 0.92472 0.89054 0.90986 0.84544 0.84639 0.84652 0.84212 0.82838 0.81632 0.89752 0.90846 0.92299 0.89976 0.80605 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.03 37.16 0.34 -1.65 16 2 C -0.11 -1.70 2.46 -90.49 -0.22 -1.93 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.12 1.57 5.71 -3.71 -0.02 1.55 16 5 N -0.60 -7.68 2.97 -173.98 -0.52 -8.20 16 6 C 0.56 7.68 6.49 -12.45 -0.08 7.60 16 7 O -0.54 -8.78 15.25 5.29 0.08 -8.70 16 8 C -0.09 -1.02 4.89 -104.66 -0.51 -1.54 16 9 C -0.09 -0.78 7.42 -39.13 -0.29 -1.07 16 10 C -0.10 -0.75 9.93 -39.99 -0.40 -1.14 16 11 C -0.10 -0.75 9.79 -39.47 -0.39 -1.14 16 12 C -0.03 -0.27 5.74 -106.84 -0.61 -0.88 16 13 C -0.16 -1.42 9.88 -39.37 -0.39 -1.81 16 14 C 0.08 0.80 11.07 -17.97 -0.20 0.61 16 15 N -0.49 -6.47 10.30 -13.22 -0.14 -6.60 16 16 C 0.16 2.15 10.50 -17.06 -0.18 1.97 16 17 C -0.08 -1.01 5.76 -106.59 -0.61 -1.62 16 18 C 0.10 1.16 5.55 -3.71 -0.02 1.14 16 19 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 20 C 0.19 3.29 2.19 -67.89 -0.15 3.14 16 21 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 22 N -0.74 -16.47 4.21 -53.39 -0.22 -16.69 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 24 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.55 13.97 55.49 0.78 -27.78 16 27 Si 0.88 21.69 27.73 -169.99 -4.71 16.97 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 31 H 0.07 1.13 7.36 -51.93 -0.38 0.75 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.23 7.03 -51.93 -0.36 0.86 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.14 1.02 7.39 -52.49 -0.39 0.63 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.17 2.35 6.52 -52.49 -0.34 2.01 16 42 H 0.08 0.90 4.76 -51.93 -0.25 0.65 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.36 8.07 5.37 -40.82 -0.22 7.85 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -33.12 375.26 -9.83 -42.95 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.61 Total: 8.24 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -4.14 Total: -5.84 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.10 Total: -59.27 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.12 -9.83 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036241248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.270 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds