Wall clock time and date at job start Tue Mar 31 2020 22:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.53090 * 2 1 4 4 C 1.53201 * 109.49515 * 239.92226 * 2 1 3 5 5 N 1.46925 * 108.77334 * 185.41835 * 4 2 1 6 6 C 1.34776 * 120.62663 * 233.59077 * 5 4 2 7 7 O 1.21585 * 120.00394 * 355.79988 * 6 5 4 8 8 C 1.47573 * 119.99905 * 175.80678 * 6 5 4 9 9 C 1.38709 * 120.43469 * 54.75911 * 8 6 5 10 10 C 1.38996 * 120.74885 * 180.02562 * 9 8 6 11 11 C 1.36336 * 121.19440 * 359.97438 * 10 9 8 12 12 C 1.40355 * 119.92892 * 359.97438 * 11 10 9 13 13 C 1.40687 * 122.10165 * 179.97438 * 12 11 10 14 14 C 1.36261 * 118.66493 * 179.97438 * 13 12 11 15 15 N 1.32505 * 121.84241 * 0.02571 * 14 13 12 16 16 C 1.31317 * 122.72002 * 359.97438 * 15 14 13 17 17 C 1.40136 * 119.91829 * 359.73648 * 16 15 14 18 18 C 1.46918 * 118.74280 * 53.60621 * 5 4 2 19 19 C 1.53196 * 108.77684 * 306.39131 * 18 5 4 20 20 C 1.53042 * 109.49648 * 120.08576 * 2 1 3 21 21 H 1.09007 * 109.46099 * 61.29756 * 20 2 1 22 22 N 1.46493 * 109.46351 * 301.33458 * 20 2 1 23 23 C 1.36927 * 120.00457 * 154.93088 * 22 20 2 24 24 H 1.08000 * 119.99908 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00363 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00145 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 119.99610 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.46845 * 90.00311 * 27 25 23 29 29 H 1.48502 * 109.46719 * 209.99744 * 27 25 23 30 30 H 1.48501 * 109.47469 * 329.99964 * 27 25 23 31 31 H 1.09001 * 109.47106 * 299.91928 * 1 2 3 32 32 H 1.08998 * 109.47020 * 59.91089 * 1 2 3 33 33 H 1.08998 * 109.47352 * 179.91527 * 1 2 3 34 34 H 1.09001 * 109.58293 * 65.62991 * 4 2 1 35 35 H 1.09000 * 109.70059 * 305.27032 * 4 2 1 36 36 H 1.07997 * 119.62090 * 359.97438 * 9 8 6 37 37 H 1.08002 * 119.40010 * 179.97438 * 10 9 8 38 38 H 1.08002 * 120.03671 * 179.97438 * 11 10 9 39 39 H 1.07996 * 120.66830 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.08030 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.04159 * 180.02562 * 16 15 14 42 42 H 1.09004 * 109.59318 * 186.60299 * 18 5 4 43 43 H 1.08997 * 109.58550 * 66.17869 * 18 5 4 44 44 H 1.08992 * 109.50138 * 294.68342 * 19 18 5 45 45 H 1.08999 * 109.52311 * 174.59912 * 19 18 5 46 46 H 0.97003 * 119.99686 * 334.93854 * 22 20 2 47 47 H 0.96996 * 119.99591 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 3.5045 -0.8292 -1.1697 6 6 4.2810 -0.3864 -2.1783 7 8 3.7709 0.0356 -3.1981 8 6 5.7505 -0.4138 -2.0450 9 6 6.4055 -1.5953 -1.7304 10 6 7.7892 -1.6285 -1.6027 11 6 8.5420 -0.5061 -1.7825 12 6 7.9199 0.7105 -2.1031 13 6 8.6519 1.8960 -2.2980 14 6 7.9762 3.0380 -2.6075 15 7 6.6568 3.0588 -2.7280 16 6 5.9118 1.9906 -2.5598 17 6 6.5105 0.7634 -2.2447 18 6 4.1052 -1.4268 0.0306 19 6 3.5708 -0.6952 1.2659 20 6 2.0408 -0.7232 1.2483 21 1 1.6967 -1.7575 1.2352 22 7 1.5266 -0.0532 2.4453 23 6 1.3951 -0.7499 3.6167 24 1 1.6702 -1.7934 3.6582 25 6 0.9074 -0.1151 4.7509 26 7 0.7815 -0.7846 5.8770 27 14 0.4310 1.6897 4.6790 28 1 -0.9998 1.8092 4.2997 29 1 0.6436 2.3111 6.0108 30 1 1.2705 2.3835 3.6693 31 1 -0.3633 0.5126 0.8907 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3634 -1.0276 -0.0015 34 1 1.7637 -0.1578 -2.1389 35 1 1.6053 -1.7215 -1.3007 36 1 5.8338 -2.4995 -1.5821 37 1 8.2767 -2.5603 -1.3566 38 1 9.6160 -0.5531 -1.6784 39 1 9.7278 1.9008 -2.2041 40 1 8.5315 3.9518 -2.7590 41 1 4.8394 2.0567 -2.6689 42 1 5.1895 -1.3249 -0.0139 43 1 3.8374 -2.4819 0.0865 44 1 3.9159 0.3386 1.2541 45 1 3.9334 -1.1895 2.1672 46 1 1.2791 0.8840 2.4079 47 1 0.4404 -0.3411 6.6693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036241248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:00 Heat of formation + Delta-G solvation = 17.868645 kcal Electronic energy + Delta-G solvation = -29553.172058 eV Core-core repulsion = 25700.179130 eV Total energy + Delta-G solvation = -3852.992929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.25164 -41.00941 -39.14727 -38.22756 -36.32610 -34.68801 -33.90206 -33.19365 -32.27954 -31.57417 -30.83940 -27.79098 -26.94605 -25.49463 -24.67986 -24.49411 -23.57564 -23.03145 -21.47361 -20.55133 -19.49731 -19.17014 -18.38257 -17.96193 -17.50985 -17.06970 -16.76167 -16.09426 -16.06263 -15.69247 -15.55940 -15.29577 -15.22455 -14.94285 -14.86026 -14.66038 -14.48075 -14.10554 -13.80896 -13.61872 -13.46029 -13.28988 -12.97391 -12.96935 -12.87320 -12.77525 -12.54871 -12.43310 -12.15943 -12.02332 -11.89932 -11.77162 -11.30204 -11.19094 -11.04355 -10.85873 -10.54024 -10.17763 -9.78066 -9.29195 -9.07651 -8.00660 -5.32057 -0.86108 -0.15622 0.61740 1.37359 1.37830 1.44850 1.46383 1.84235 2.06763 2.48168 2.99374 3.22029 3.31490 3.41317 3.52130 3.61655 3.70276 3.76541 3.82319 3.91667 3.95819 4.01151 4.17331 4.23572 4.32761 4.38048 4.41511 4.56119 4.59257 4.61733 4.72317 4.75686 4.77588 4.80154 4.84427 4.91202 4.99082 4.99256 5.13497 5.21547 5.23519 5.34487 5.35943 5.43144 5.56618 5.58996 5.75931 5.80140 6.23737 6.24928 6.90543 6.95593 7.09601 7.86759 8.04582 9.20873 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.003132 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.776132 B = 8937.618658 C = 9172.426945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 H 0.058 0.942 4 C 0.125 3.875 5 N -0.595 5.595 6 C 0.560 3.440 7 O -0.571 6.571 8 C -0.121 4.121 9 C -0.071 4.071 10 C -0.101 4.101 11 C -0.081 4.081 12 C -0.046 4.046 13 C -0.137 4.137 14 C 0.052 3.948 15 N -0.510 5.510 16 C 0.123 3.877 17 C -0.094 4.094 18 C 0.107 3.893 19 C -0.144 4.144 20 C 0.183 3.817 21 H 0.056 0.944 22 N -0.749 5.749 23 C -0.217 4.217 24 H 0.065 0.935 25 C -0.060 4.060 26 N -0.983 5.983 27 Si 0.943 3.057 28 H -0.279 1.279 29 H -0.299 1.299 30 H -0.261 1.261 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.182 0.818 40 H 0.179 0.821 41 H 0.143 0.857 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.361 0.639 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.467 -1.738 -19.277 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 H 0.076 0.924 4 C 0.003 3.997 5 N -0.326 5.326 6 C 0.349 3.651 7 O -0.452 6.452 8 C -0.126 4.126 9 C -0.089 4.089 10 C -0.120 4.120 11 C -0.099 4.099 12 C -0.052 4.052 13 C -0.156 4.156 14 C -0.092 4.092 15 N -0.219 5.219 16 C -0.047 4.047 17 C -0.097 4.097 18 C -0.015 4.015 19 C -0.185 4.185 20 C 0.075 3.925 21 H 0.074 0.926 22 N -0.391 5.391 23 C -0.348 4.348 24 H 0.083 0.917 25 C -0.251 4.251 26 N -0.634 5.634 27 Si 0.772 3.228 28 H -0.206 1.206 29 H -0.226 1.226 30 H -0.186 1.186 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.173 0.827 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.199 0.801 40 H 0.196 0.804 41 H 0.160 0.840 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.194 0.806 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.907 -0.831 -19.869 26.761 hybrid contribution -0.576 0.645 0.905 1.252 sum 17.331 -0.186 -18.964 25.691 Atomic orbital electron populations 1.21635 0.93483 1.02567 1.01557 1.21676 0.97068 0.99321 0.94405 0.92387 1.21688 0.78282 1.01912 0.97820 1.48151 1.07122 1.59362 1.17945 1.18489 0.87068 0.76693 0.82847 1.90773 1.75699 1.48679 1.30010 1.19762 0.92076 0.95350 1.05431 1.21784 0.96221 0.96604 0.94322 1.21366 0.92442 1.00568 0.97602 1.21599 1.02262 0.90118 0.95891 1.18508 0.91302 0.96614 0.98754 1.22370 1.02862 0.91473 0.98850 1.22767 0.89282 1.00051 0.97072 1.67415 1.08995 1.31569 1.13903 1.23088 0.99908 0.87797 0.93879 1.18833 0.94617 0.94226 1.02028 1.22140 0.99408 0.97878 0.82097 1.22460 0.98213 1.00133 0.97666 1.20422 0.91620 0.95777 0.84705 0.92642 1.42817 1.78506 1.09999 1.07728 1.19020 1.33627 0.94723 0.87412 0.91702 1.25331 1.02791 1.01514 0.95489 1.69852 1.54514 1.37529 1.01492 0.85590 0.78599 0.82018 0.76620 1.20577 1.22640 1.18584 0.93726 0.91280 0.91921 0.89379 0.89164 0.82690 0.80814 0.80848 0.80100 0.80362 0.84002 0.87870 0.88562 0.93669 0.91405 0.80632 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.03 71.98 0.65 -3.15 16 2 C -0.10 -3.06 2.46 -10.71 -0.03 -3.09 16 3 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 4 C 0.13 3.15 5.71 86.37 0.49 3.65 16 5 N -0.60 -14.77 2.97 -822.62 -2.44 -17.22 16 6 C 0.56 15.35 6.49 86.71 0.56 15.92 16 7 O -0.57 -19.34 15.25 -3.98 -0.06 -19.41 16 8 C -0.12 -2.79 4.89 -19.89 -0.10 -2.88 16 9 C -0.07 -1.07 7.42 22.56 0.17 -0.90 16 10 C -0.10 -1.01 9.93 22.01 0.22 -0.79 16 11 C -0.08 -0.89 9.79 22.34 0.22 -0.67 16 12 C -0.05 -0.84 5.74 -21.30 -0.12 -0.96 16 13 C -0.14 -2.05 9.88 22.41 0.22 -1.83 16 14 C 0.05 1.01 11.07 84.13 0.93 1.94 16 15 N -0.51 -14.07 10.30 -195.73 -2.02 -16.09 16 16 C 0.12 3.57 10.50 85.23 0.89 4.47 16 17 C -0.09 -2.33 5.76 -21.14 -0.12 -2.45 16 18 C 0.11 2.36 5.55 86.37 0.48 2.84 16 19 C -0.14 -4.40 5.66 30.67 0.17 -4.23 16 20 C 0.18 6.30 2.19 45.02 0.10 6.40 16 21 H 0.06 1.96 8.08 -2.38 -0.02 1.94 16 22 N -0.75 -33.16 4.21 -322.82 -1.36 -34.52 16 23 C -0.22 -11.74 10.41 84.04 0.87 -10.86 16 24 H 0.07 3.80 8.06 -2.91 -0.02 3.77 16 25 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 26 N -0.98 -61.79 13.97 21.65 0.30 -61.49 16 27 Si 0.94 45.50 27.73 68.60 1.90 47.41 16 28 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 29 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 30 H -0.26 -11.67 6.52 99.48 0.65 -11.02 16 31 H 0.04 1.46 7.36 -2.39 -0.02 1.44 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 2.33 7.03 -2.39 -0.02 2.32 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.16 1.70 7.39 -2.91 -0.02 1.67 16 37 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 38 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.14 4.53 6.52 -2.91 -0.02 4.51 16 42 H 0.10 1.93 4.76 -2.39 -0.01 1.92 16 43 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.36 16.02 5.37 -92.71 -0.50 15.52 16 47 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -76.64 375.26 2.84 -73.80 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.44 Total: 27.10 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.08 Total: 0.42 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -5.52 Total: -129.31 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.06 Total: -19.41 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.41 kcal Total: -76.64 2.84 -73.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036241248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.665 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds