Wall clock time and date at job start Tue Mar 31 2020 22:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49523 * 2 1 4 4 C 1.53188 * 109.50193 * 120.07072 * 2 1 3 5 5 N 1.46927 * 108.77572 * 174.58582 * 4 2 1 6 6 C 1.34772 * 120.63200 * 126.41589 * 5 4 2 7 7 O 1.21597 * 119.99885 * 354.26495 * 6 5 4 8 8 C 1.47562 * 120.00307 * 174.26409 * 6 5 4 9 9 C 1.38702 * 120.43387 * 305.90110 * 8 6 5 10 10 C 1.39004 * 120.75000 * 179.97438 * 9 8 6 11 11 C 1.36341 * 121.19396 * 0.02562 * 10 9 8 12 12 C 1.40352 * 119.92845 * 359.97438 * 11 10 9 13 13 C 1.40678 * 122.10309 * 180.02562 * 12 11 10 14 14 C 1.36269 * 118.66537 * 179.97438 * 13 12 11 15 15 N 1.32505 * 121.84322 * 359.97174 * 14 13 12 16 16 C 1.31317 * 122.72146 * 0.02932 * 15 14 13 17 17 C 1.40145 * 119.91441 * 359.69859 * 16 15 14 18 18 C 1.46927 * 118.73639 * 306.38933 * 5 4 2 19 19 C 1.53194 * 108.77539 * 53.61324 * 18 5 4 20 20 C 1.53040 * 109.33728 * 305.34655 * 19 18 5 21 21 H 1.09000 * 109.46073 * 181.40212 * 20 19 18 22 22 N 1.46500 * 109.45941 * 301.35776 * 20 19 18 23 23 C 1.36935 * 120.00326 * 275.00457 * 22 20 19 24 24 H 1.07995 * 119.99965 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00092 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99888 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99975 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47207 * 90.00148 * 27 25 23 29 29 H 1.48502 * 109.47321 * 209.99975 * 27 25 23 30 30 H 1.48498 * 109.47281 * 330.00273 * 27 25 23 31 31 H 1.09002 * 109.46618 * 299.92661 * 1 2 3 32 32 H 1.08995 * 109.47127 * 59.92780 * 1 2 3 33 33 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.58099 * 54.79793 * 4 2 1 35 35 H 1.09003 * 109.70058 * 294.44546 * 4 2 1 36 36 H 1.08001 * 119.62652 * 359.97438 * 9 8 6 37 37 H 1.08000 * 119.40053 * 180.02562 * 10 9 8 38 38 H 1.08002 * 120.03572 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.67170 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.07788 * 179.97438 * 14 13 12 41 41 H 1.07990 * 120.04819 * 179.97438 * 16 15 14 42 42 H 1.08996 * 109.58929 * 293.82291 * 18 5 4 43 43 H 1.09003 * 109.58446 * 173.39633 * 18 5 4 44 44 H 1.09000 * 109.50034 * 65.31132 * 19 18 5 45 45 H 1.08999 * 109.49855 * 185.37903 * 19 18 5 46 46 H 0.97007 * 119.99675 * 95.00388 * 22 20 19 47 47 H 0.96996 * 119.99259 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2496 5 7 3.5047 -0.8288 1.1696 6 6 4.2813 -0.3860 2.1781 7 8 3.7807 0.1999 3.1187 8 6 5.7390 -0.6121 2.1410 9 6 6.2475 -1.8911 1.9691 10 6 7.6194 -2.1115 1.9326 11 6 8.5038 -1.0823 2.0646 12 6 8.0322 0.2279 2.2405 13 6 8.9034 1.3235 2.3808 14 6 8.3695 2.5661 2.5476 15 7 7.0599 2.7657 2.5799 16 6 6.1899 1.7900 2.4553 17 6 6.6367 0.4742 2.2735 18 6 4.1053 -1.4267 -0.0307 19 6 3.5708 -0.6952 -1.2661 20 6 2.0408 -0.7232 -1.2491 21 1 1.6585 -0.2249 -2.1400 22 7 1.5783 -2.1132 -1.2314 23 6 1.4474 -2.8063 -2.4050 24 1 1.6847 -2.3282 -3.3439 25 6 1.0086 -4.1232 -2.3882 26 7 0.8823 -4.7892 -3.5165 27 14 0.5975 -4.9500 -0.7644 28 1 -0.8360 -4.7293 -0.4455 29 1 0.8624 -6.4074 -0.8699 30 1 1.4392 -4.3707 0.3131 31 1 -0.3632 0.5127 0.8907 32 1 -0.3633 0.5149 -0.8893 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6054 -1.7213 1.2982 35 1 1.7638 -0.1596 2.1402 36 1 5.5697 -2.7251 1.8623 37 1 7.9916 -3.1163 1.7972 38 1 9.5660 -1.2748 2.0331 39 1 9.9739 1.1828 2.3561 40 1 9.0322 3.4119 2.6564 41 1 5.1315 2.0018 2.4885 42 1 3.8376 -2.4818 -0.0865 43 1 5.1896 -1.3245 0.0137 44 1 3.9158 0.3387 -1.2544 45 1 3.9338 -1.1897 -2.1671 46 1 1.3648 -2.5426 -0.3881 47 1 0.5761 -5.7095 -3.5046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036241251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:12 Heat of formation + Delta-G solvation = 38.789559 kcal Electronic energy + Delta-G solvation = -29965.335543 eV Core-core repulsion = 26113.249813 eV Total energy + Delta-G solvation = -3852.085730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.35356 -39.98117 -37.99684 -37.36364 -34.52330 -33.40254 -32.74139 -31.58547 -31.48906 -30.08711 -29.78321 -26.64464 -25.57822 -24.49326 -23.81990 -23.31272 -22.92628 -21.75053 -20.02601 -18.60444 -18.28012 -17.90302 -17.41593 -17.05681 -16.49441 -16.01449 -15.21939 -14.92939 -14.78499 -14.65135 -14.48535 -14.33315 -14.00116 -13.85814 -13.66015 -13.49746 -13.16109 -12.81820 -12.65059 -12.48822 -12.29639 -12.23370 -11.78228 -11.76707 -11.64204 -11.46122 -11.05392 -10.98817 -10.68072 -10.61031 -10.43502 -10.27456 -9.91139 -9.87459 -9.67600 -9.60870 -9.40545 -9.01693 -8.50076 -8.30855 -7.34076 -5.83996 -3.19549 -0.06954 0.61737 1.44964 2.50747 2.77097 3.03704 3.27838 3.31871 3.38975 3.80560 4.14877 4.22527 4.40132 4.47393 4.50961 4.57804 4.66266 4.81629 4.99844 5.02009 5.07924 5.16528 5.28030 5.29900 5.38167 5.45664 5.47319 5.54945 5.57976 5.62775 5.70107 5.73944 5.81657 5.86678 5.94647 6.01001 6.05321 6.16370 6.23574 6.30979 6.33975 6.41277 6.46430 6.50392 6.61356 6.70279 6.80790 7.41990 7.75457 7.92398 8.06730 8.35079 9.13034 9.85503 10.05296 11.34404 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003463 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.821705 B = 8083.631347 C = 8821.725284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.557 3.443 7 O -0.539 6.539 8 C -0.085 4.085 9 C -0.082 4.082 10 C -0.098 4.098 11 C -0.097 4.097 12 C -0.026 4.026 13 C -0.158 4.158 14 C 0.076 3.924 15 N -0.487 5.487 16 C 0.157 3.843 17 C -0.081 4.081 18 C 0.108 3.892 19 C -0.149 4.149 20 C 0.184 3.816 21 H 0.062 0.938 22 N -0.743 5.743 23 C -0.241 4.241 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.879 3.121 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.167 0.833 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.029 9.531 11.425 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.324 5.324 6 C 0.344 3.656 7 O -0.418 6.418 8 C -0.090 4.090 9 C -0.100 4.100 10 C -0.117 4.117 11 C -0.115 4.115 12 C -0.031 4.031 13 C -0.177 4.177 14 C -0.067 4.067 15 N -0.195 5.195 16 C -0.013 4.013 17 C -0.084 4.084 18 C -0.014 4.014 19 C -0.190 4.190 20 C 0.075 3.925 21 H 0.080 0.920 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.580 5.580 27 Si 0.709 3.291 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.572 10.664 11.774 21.557 hybrid contribution 0.109 -1.834 0.851 2.025 sum 14.681 8.830 12.626 21.281 Atomic orbital electron populations 1.21675 0.94054 1.02804 1.01061 1.21772 0.96628 0.99397 0.95390 0.90866 1.21724 0.78167 1.01300 0.99349 1.48118 1.07147 1.59266 1.17867 1.18162 0.85856 0.78879 0.82684 1.90795 1.74776 1.41754 1.34443 1.19878 0.93076 0.93885 1.02206 1.21459 0.96063 0.96070 0.96456 1.20942 0.92620 0.99913 0.98258 1.21111 1.00339 0.91167 0.98897 1.18112 0.92120 0.94603 0.98298 1.21900 1.00470 0.93030 1.02327 1.22262 0.91483 0.96595 0.96366 1.67518 1.03393 1.35989 1.12565 1.23360 1.00094 0.86913 0.90982 1.18736 0.92802 0.94822 1.02027 1.21907 0.97184 0.98670 0.83661 1.22501 1.00010 0.99062 0.97453 1.20203 0.90870 0.86165 0.95292 0.92043 1.42841 1.80679 1.09378 1.05819 1.19053 1.37559 0.94188 0.86279 0.89151 1.24640 1.01536 0.96721 0.96003 1.69692 1.53030 1.10881 1.24423 0.86666 0.78536 0.79278 0.84612 1.21025 1.21766 1.20561 0.93433 0.92214 0.91702 0.91225 0.89162 0.84569 0.84633 0.84682 0.84280 0.82903 0.81593 0.89970 0.90600 0.92883 0.90095 0.80629 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.05 37.16 0.34 -1.65 16 2 C -0.11 -1.66 2.67 -90.47 -0.24 -1.90 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.76 5.43 -3.71 -0.02 1.74 16 5 N -0.59 -8.76 2.97 -173.98 -0.52 -9.28 16 6 C 0.56 8.38 6.48 -12.46 -0.08 8.30 16 7 O -0.54 -9.41 15.20 5.28 0.08 -9.33 16 8 C -0.09 -1.12 4.63 -104.67 -0.48 -1.60 16 9 C -0.08 -0.89 7.76 -39.13 -0.30 -1.20 16 10 C -0.10 -0.86 9.93 -39.98 -0.40 -1.25 16 11 C -0.10 -0.83 9.79 -39.47 -0.39 -1.22 16 12 C -0.03 -0.28 5.74 -106.84 -0.61 -0.89 16 13 C -0.16 -1.43 9.88 -39.37 -0.39 -1.81 16 14 C 0.08 0.78 11.07 -17.97 -0.20 0.58 16 15 N -0.49 -6.37 10.30 -13.21 -0.14 -6.51 16 16 C 0.16 2.14 10.50 -17.06 -0.18 1.96 16 17 C -0.08 -1.05 5.76 -106.58 -0.61 -1.66 16 18 C 0.11 1.57 5.32 -3.71 -0.02 1.55 16 19 C -0.15 -2.31 5.78 -26.61 -0.15 -2.47 16 20 C 0.18 3.18 2.53 -67.86 -0.17 3.01 16 21 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 22 N -0.74 -15.61 3.45 -53.35 -0.18 -15.79 16 23 C -0.24 -6.22 10.41 -15.06 -0.16 -6.38 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.01 13.97 55.49 0.78 -27.23 16 27 Si 0.88 20.96 27.73 -169.99 -4.71 16.25 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 34 H 0.07 1.12 6.64 -51.93 -0.34 0.78 16 35 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 36 H 0.14 1.41 7.75 -52.49 -0.41 1.00 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.17 2.35 6.50 -52.49 -0.34 2.01 16 42 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 43 H 0.08 0.97 5.39 -51.93 -0.28 0.69 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.36 7.56 3.79 -40.82 -0.15 7.41 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -31.64 372.33 -9.76 -41.40 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.50 Total: 9.68 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -4.17 Total: -4.80 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.06 Total: -58.81 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.64 -9.76 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036241251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.188 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds