Wall clock time and date at job start Tue Mar 31 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49523 * 2 1 4 4 C 1.53188 * 109.50193 * 120.07072 * 2 1 3 5 5 N 1.46927 * 108.77572 * 174.58582 * 4 2 1 6 6 C 1.34772 * 120.63200 * 126.41589 * 5 4 2 7 7 O 1.21597 * 119.99885 * 354.26495 * 6 5 4 8 8 C 1.47562 * 120.00307 * 174.26409 * 6 5 4 9 9 C 1.38702 * 120.43387 * 305.90110 * 8 6 5 10 10 C 1.39004 * 120.75000 * 179.97438 * 9 8 6 11 11 C 1.36341 * 121.19396 * 0.02562 * 10 9 8 12 12 C 1.40352 * 119.92845 * 359.97438 * 11 10 9 13 13 C 1.40678 * 122.10309 * 180.02562 * 12 11 10 14 14 C 1.36269 * 118.66537 * 179.97438 * 13 12 11 15 15 N 1.32505 * 121.84322 * 359.97174 * 14 13 12 16 16 C 1.31317 * 122.72146 * 0.02932 * 15 14 13 17 17 C 1.40145 * 119.91441 * 359.69859 * 16 15 14 18 18 C 1.46927 * 118.73639 * 306.38933 * 5 4 2 19 19 C 1.53194 * 108.77539 * 53.61324 * 18 5 4 20 20 C 1.53040 * 109.33728 * 305.34655 * 19 18 5 21 21 H 1.09000 * 109.46073 * 181.40212 * 20 19 18 22 22 N 1.46500 * 109.45941 * 301.35776 * 20 19 18 23 23 C 1.36935 * 120.00326 * 275.00457 * 22 20 19 24 24 H 1.07995 * 119.99965 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00092 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99888 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99975 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47207 * 90.00148 * 27 25 23 29 29 H 1.48502 * 109.47321 * 209.99975 * 27 25 23 30 30 H 1.48498 * 109.47281 * 330.00273 * 27 25 23 31 31 H 1.09002 * 109.46618 * 299.92661 * 1 2 3 32 32 H 1.08995 * 109.47127 * 59.92780 * 1 2 3 33 33 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.58099 * 54.79793 * 4 2 1 35 35 H 1.09003 * 109.70058 * 294.44546 * 4 2 1 36 36 H 1.08001 * 119.62652 * 359.97438 * 9 8 6 37 37 H 1.08000 * 119.40053 * 180.02562 * 10 9 8 38 38 H 1.08002 * 120.03572 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.67170 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.07788 * 179.97438 * 14 13 12 41 41 H 1.07990 * 120.04819 * 179.97438 * 16 15 14 42 42 H 1.08996 * 109.58929 * 293.82291 * 18 5 4 43 43 H 1.09003 * 109.58446 * 173.39633 * 18 5 4 44 44 H 1.09000 * 109.50034 * 65.31132 * 19 18 5 45 45 H 1.08999 * 109.49855 * 185.37903 * 19 18 5 46 46 H 0.97007 * 119.99675 * 95.00388 * 22 20 19 47 47 H 0.96996 * 119.99259 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2496 5 7 3.5047 -0.8288 1.1696 6 6 4.2813 -0.3860 2.1781 7 8 3.7807 0.1999 3.1187 8 6 5.7390 -0.6121 2.1410 9 6 6.2475 -1.8911 1.9691 10 6 7.6194 -2.1115 1.9326 11 6 8.5038 -1.0823 2.0646 12 6 8.0322 0.2279 2.2405 13 6 8.9034 1.3235 2.3808 14 6 8.3695 2.5661 2.5476 15 7 7.0599 2.7657 2.5799 16 6 6.1899 1.7900 2.4553 17 6 6.6367 0.4742 2.2735 18 6 4.1053 -1.4267 -0.0307 19 6 3.5708 -0.6952 -1.2661 20 6 2.0408 -0.7232 -1.2491 21 1 1.6585 -0.2249 -2.1400 22 7 1.5783 -2.1132 -1.2314 23 6 1.4474 -2.8063 -2.4050 24 1 1.6847 -2.3282 -3.3439 25 6 1.0086 -4.1232 -2.3882 26 7 0.8823 -4.7892 -3.5165 27 14 0.5975 -4.9500 -0.7644 28 1 -0.8360 -4.7293 -0.4455 29 1 0.8624 -6.4074 -0.8699 30 1 1.4392 -4.3707 0.3131 31 1 -0.3632 0.5127 0.8907 32 1 -0.3633 0.5149 -0.8893 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6054 -1.7213 1.2982 35 1 1.7638 -0.1596 2.1402 36 1 5.5697 -2.7251 1.8623 37 1 7.9916 -3.1163 1.7972 38 1 9.5660 -1.2748 2.0331 39 1 9.9739 1.1828 2.3561 40 1 9.0322 3.4119 2.6564 41 1 5.1315 2.0018 2.4885 42 1 3.8376 -2.4818 -0.0865 43 1 5.1896 -1.3245 0.0137 44 1 3.9158 0.3387 -1.2544 45 1 3.9338 -1.1897 -2.1671 46 1 1.3648 -2.5426 -0.3881 47 1 0.5761 -5.7095 -3.5046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036241251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:11 Heat of formation + Delta-G solvation = 20.314336 kcal Electronic energy + Delta-G solvation = -29966.136689 eV Core-core repulsion = 26113.249813 eV Total energy + Delta-G solvation = -3852.886876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.26085 -41.08223 -39.26070 -38.22044 -36.00813 -34.68560 -33.89296 -33.15243 -32.27962 -31.52044 -30.84901 -27.80803 -26.90455 -25.43274 -25.01829 -24.56732 -23.93703 -23.08348 -21.12318 -19.96232 -19.75929 -19.11184 -18.41414 -17.95462 -17.50711 -17.07120 -16.67042 -16.23675 -15.92127 -15.69516 -15.59778 -15.32261 -15.25396 -15.10524 -14.86461 -14.60389 -14.49484 -14.25160 -13.71948 -13.64180 -13.38666 -13.28486 -12.99285 -12.96400 -12.89805 -12.69919 -12.56894 -12.44703 -12.08354 -11.99794 -11.94171 -11.68797 -11.30503 -11.22026 -11.04201 -10.86894 -10.53023 -10.19630 -9.75850 -9.25882 -9.08600 -7.97400 -5.28958 -0.87027 -0.16304 0.60997 1.36791 1.40086 1.46613 1.47238 1.81909 2.04912 2.50086 2.99580 3.21265 3.34617 3.42939 3.59242 3.60769 3.69898 3.76493 3.82699 3.91578 3.94923 3.97063 4.15876 4.21990 4.29740 4.38092 4.39185 4.52920 4.56103 4.62307 4.66967 4.76017 4.77237 4.84555 4.89979 4.96886 4.98759 5.08827 5.13340 5.20374 5.22317 5.23936 5.33088 5.40211 5.54420 5.59279 5.74405 5.84524 6.24204 6.27189 6.90049 6.95015 7.12775 7.88649 8.07910 9.24441 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003463 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.821705 B = 8083.631347 C = 8821.725284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.087 0.913 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.560 3.440 7 O -0.570 6.570 8 C -0.118 4.118 9 C -0.074 4.074 10 C -0.103 4.103 11 C -0.077 4.077 12 C -0.045 4.045 13 C -0.135 4.135 14 C 0.055 3.945 15 N -0.507 5.507 16 C 0.127 3.873 17 C -0.092 4.092 18 C 0.117 3.883 19 C -0.143 4.143 20 C 0.179 3.821 21 H 0.050 0.950 22 N -0.740 5.740 23 C -0.213 4.213 24 H 0.060 0.940 25 C -0.059 4.059 26 N -0.984 5.984 27 Si 0.941 3.059 28 H -0.284 1.284 29 H -0.300 1.300 30 H -0.254 1.254 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.176 0.824 39 H 0.182 0.818 40 H 0.182 0.818 41 H 0.146 0.854 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.363 0.637 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.182 9.679 13.138 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 H 0.105 0.895 4 C -0.005 4.005 5 N -0.324 5.324 6 C 0.349 3.651 7 O -0.451 6.451 8 C -0.123 4.123 9 C -0.093 4.093 10 C -0.122 4.122 11 C -0.095 4.095 12 C -0.050 4.050 13 C -0.154 4.154 14 C -0.089 4.089 15 N -0.215 5.215 16 C -0.043 4.043 17 C -0.095 4.095 18 C -0.005 4.005 19 C -0.184 4.184 20 C 0.071 3.929 21 H 0.068 0.932 22 N -0.384 5.384 23 C -0.345 4.345 24 H 0.078 0.922 25 C -0.250 4.250 26 N -0.636 5.636 27 Si 0.770 3.230 28 H -0.210 1.210 29 H -0.227 1.227 30 H -0.178 1.178 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.156 0.844 37 H 0.186 0.814 38 H 0.193 0.807 39 H 0.199 0.801 40 H 0.199 0.801 41 H 0.163 0.837 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.197 0.803 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.739 10.863 13.518 24.807 hybrid contribution -0.733 -1.759 0.287 1.928 sum 17.006 9.104 13.805 23.720 Atomic orbital electron populations 1.21651 0.93544 1.01868 1.02261 1.21682 0.97003 0.99611 0.93856 0.89472 1.21668 0.78645 1.00766 0.99389 1.48120 1.06957 1.59332 1.17960 1.18515 0.86875 0.77819 0.81888 1.90763 1.75655 1.43100 1.35550 1.19716 0.91618 0.95087 1.05861 1.21674 0.97574 0.95083 0.94970 1.21299 0.91402 1.01713 0.97806 1.21585 1.02334 0.89717 0.95834 1.18496 0.91304 0.96411 0.98824 1.22360 1.02282 0.91761 0.99046 1.22795 0.90674 0.98491 0.96897 1.67441 1.04945 1.36434 1.12698 1.23092 0.99521 0.87917 0.93751 1.18817 0.94152 0.94180 1.02334 1.21796 0.98334 0.97370 0.82987 1.22373 0.98291 1.00198 0.97495 1.20391 0.92095 0.84216 0.96235 0.93178 1.42767 1.80764 1.10605 1.04295 1.18983 1.34742 0.93949 0.86787 0.92171 1.25312 1.02888 0.97687 0.99144 1.69864 1.55649 1.11102 1.26938 0.85633 0.78478 0.77604 0.81334 1.21046 1.22680 1.17843 0.91197 0.92130 0.93608 0.92128 0.88968 0.84360 0.81420 0.80654 0.80060 0.80125 0.83705 0.91532 0.88582 0.91127 0.91444 0.80283 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.05 71.98 0.65 -3.12 16 2 C -0.10 -2.94 2.67 -10.69 -0.03 -2.96 16 3 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.12 3.48 5.43 86.36 0.47 3.95 16 5 N -0.59 -17.20 2.97 -822.62 -2.44 -19.64 16 6 C 0.56 16.85 6.48 86.70 0.56 17.41 16 7 O -0.57 -20.37 15.20 -4.02 -0.06 -20.43 16 8 C -0.12 -2.98 4.63 -19.89 -0.09 -3.07 16 9 C -0.07 -1.46 7.76 22.56 0.18 -1.28 16 10 C -0.10 -1.38 9.93 22.01 0.22 -1.16 16 11 C -0.08 -0.94 9.79 22.34 0.22 -0.73 16 12 C -0.04 -0.82 5.74 -21.30 -0.12 -0.94 16 13 C -0.14 -1.92 9.88 22.41 0.22 -1.70 16 14 C 0.05 0.99 11.07 84.13 0.93 1.92 16 15 N -0.51 -13.13 10.30 -195.72 -2.02 -15.15 16 16 C 0.13 3.54 10.50 85.23 0.89 4.44 16 17 C -0.09 -2.29 5.76 -21.13 -0.12 -2.41 16 18 C 0.12 3.30 5.32 86.36 0.46 3.76 16 19 C -0.14 -4.35 5.78 30.67 0.18 -4.17 16 20 C 0.18 6.13 2.53 45.04 0.11 6.24 16 21 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 22 N -0.74 -31.02 3.45 -322.72 -1.11 -32.13 16 23 C -0.21 -11.23 10.41 84.03 0.87 -10.35 16 24 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 25 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 26 N -0.98 -60.91 13.97 21.65 0.30 -60.61 16 27 Si 0.94 43.66 27.73 68.60 1.90 45.56 16 28 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 29 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 30 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.45 7.53 -2.39 -0.02 1.43 16 34 H 0.06 1.90 6.64 -2.39 -0.02 1.89 16 35 H 0.09 2.72 7.00 -2.39 -0.02 2.71 16 36 H 0.14 2.59 7.75 -2.91 -0.02 2.56 16 37 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 39 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.15 4.43 6.50 -2.92 -0.02 4.41 16 42 H 0.07 2.10 7.74 -2.39 -0.02 2.08 16 43 H 0.10 2.33 5.39 -2.39 -0.01 2.31 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.36 14.96 3.79 -92.70 -0.35 14.61 16 47 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -72.26 372.33 3.22 -69.03 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.58 Total: 30.38 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.07 Total: 2.98 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -5.27 Total: -127.53 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.06 Total: -20.43 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Total: -72.26 3.22 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036241251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.346 kcal (2) G-P(sol) polarization free energy of solvation -72.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds