Wall clock time and date at job start Tue Mar 31 2020 22:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.49914 * 2 1 4 4 C 1.53190 * 109.49868 * 239.89732 * 2 1 3 5 5 N 1.46924 * 108.77623 * 185.41423 * 4 2 1 6 6 C 1.34783 * 120.63245 * 233.62979 * 5 4 2 7 7 O 1.21563 * 119.99529 * 356.22920 * 6 5 4 8 8 C 1.47768 * 120.00358 * 176.22631 * 6 5 4 9 9 C 1.40651 * 119.69983 * 231.33343 * 8 6 5 10 10 C 1.35849 * 120.87527 * 180.02562 * 9 8 6 11 11 C 1.40394 * 119.84692 * 359.97438 * 10 9 8 12 12 C 1.40643 * 121.97693 * 180.02562 * 11 10 9 13 13 C 1.36218 * 118.72920 * 179.97438 * 12 11 10 14 14 N 1.32600 * 121.90108 * 359.97438 * 13 12 11 15 15 C 1.31244 * 122.73955 * 0.02562 * 14 13 12 16 16 C 1.40541 * 119.88961 * 359.97438 * 15 14 13 17 17 C 1.38570 * 119.70108 * 51.06012 * 8 6 5 18 18 C 1.46990 * 118.75784 * 53.60735 * 5 4 2 19 19 C 1.53192 * 108.74058 * 306.41287 * 18 5 4 20 20 C 1.53037 * 109.33940 * 54.61617 * 19 18 5 21 21 H 1.09003 * 109.45895 * 178.60426 * 20 19 18 22 22 N 1.46496 * 109.46049 * 58.64370 * 20 19 18 23 23 C 1.36938 * 120.00205 * 84.99571 * 22 20 19 24 24 H 1.07998 * 119.99808 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00181 * 180.02562 * 23 22 20 26 26 N 1.31613 * 120.00211 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99835 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47371 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46952 * 120.00044 * 27 25 23 30 30 H 1.48504 * 109.47171 * 239.99969 * 27 25 23 31 31 H 1.09006 * 109.46719 * 299.94173 * 1 2 3 32 32 H 1.08998 * 109.46868 * 59.93933 * 1 2 3 33 33 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.58575 * 305.20123 * 4 2 1 35 35 H 1.09000 * 109.58661 * 65.62769 * 4 2 1 36 36 H 1.07995 * 119.56110 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.07469 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.63455 * 359.95102 * 12 11 10 39 39 H 1.07995 * 119.05391 * 179.97438 * 13 12 11 40 40 H 1.07997 * 120.05569 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.34334 * 0.02562 * 17 8 6 42 42 H 1.08998 * 109.63232 * 186.61625 * 18 5 4 43 43 H 1.09005 * 109.57842 * 66.17294 * 18 5 4 44 44 H 1.09004 * 109.49293 * 294.65236 * 19 18 5 45 45 H 1.08996 * 109.49954 * 174.59092 * 19 18 5 46 46 H 0.96999 * 120.00241 * 265.00111 * 22 20 19 47 47 H 0.97002 * 120.00113 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7243 -1.2493 5 7 3.5046 -0.8296 -1.1692 6 6 4.2812 -0.3864 -2.1777 7 8 3.7710 0.0429 -3.1942 8 6 5.7527 -0.4224 -2.0479 9 6 6.5039 0.7377 -2.3088 10 6 7.8578 0.7313 -2.1973 11 6 8.5220 -0.4455 -1.8165 12 6 9.9213 -0.5023 -1.6868 13 6 10.4969 -1.6788 -1.3127 14 7 9.7765 -2.7650 -1.0687 15 6 8.4681 -2.7863 -1.1693 16 6 7.7758 -1.6237 -1.5490 17 6 6.3796 -1.5973 -1.6647 18 6 4.1060 -1.4269 0.0317 19 6 3.5709 -0.6946 1.2663 20 6 2.0408 -0.7226 1.2486 21 1 1.6582 -0.2236 2.1390 22 7 1.5783 -2.1125 1.2316 23 6 1.4469 -2.8049 2.4057 24 1 1.6837 -2.3261 3.3443 25 6 1.0091 -4.1220 2.3896 26 7 0.7209 -4.7058 1.2457 27 14 0.8291 -5.0662 3.9914 28 1 1.2127 -4.1907 5.1278 29 1 -0.5820 -5.4989 4.1549 30 1 1.7129 -6.2593 3.9647 31 1 -0.3633 0.5130 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6052 -1.7221 -1.2973 35 1 1.7638 -0.1587 -2.1388 36 1 5.9977 1.6454 -2.6025 37 1 8.4219 1.6295 -2.4012 38 1 10.5278 0.3701 -1.8804 39 1 11.5710 -1.7285 -1.2119 40 1 7.9243 -3.6956 -0.9598 41 1 5.7985 -2.4846 -1.4614 42 1 5.1903 -1.3248 -0.0123 43 1 3.8382 -2.4820 0.0881 44 1 3.9159 0.3393 1.2539 45 1 3.9335 -1.1884 2.1678 46 1 1.3653 -2.5425 0.3886 47 1 0.4147 -5.6261 1.2344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036245384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:08 Heat of formation + Delta-G solvation = 35.440782 kcal Electronic energy + Delta-G solvation = -29528.986605 eV Core-core repulsion = 25676.755661 eV Total energy + Delta-G solvation = -3852.230944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.19642 -40.02708 -37.99153 -37.00813 -34.43697 -33.38615 -32.72853 -31.50997 -31.41766 -30.04028 -29.21677 -26.48559 -25.49738 -24.45220 -23.81146 -23.47855 -22.55364 -21.67404 -20.41176 -18.58567 -18.12788 -17.41873 -17.32538 -16.88375 -16.32763 -15.63335 -15.29422 -14.99047 -14.70021 -14.51490 -14.37115 -14.13064 -14.03101 -13.83312 -13.77014 -13.33575 -13.21254 -12.84671 -12.55995 -12.36286 -12.19687 -12.10146 -11.64214 -11.56112 -11.40567 -11.21786 -10.95416 -10.82713 -10.60973 -10.53963 -10.34419 -10.18945 -9.89073 -9.88565 -9.62408 -9.58492 -9.32408 -8.97662 -8.35939 -8.25099 -7.01915 -5.83100 -3.11685 0.01696 0.54337 1.58535 2.48146 2.92961 3.21982 3.38797 3.45430 3.47193 3.81165 4.15469 4.24258 4.41637 4.46785 4.54131 4.57350 4.80618 4.85813 4.98386 5.13898 5.26538 5.30787 5.33568 5.41784 5.49109 5.52048 5.55670 5.60529 5.67873 5.70142 5.77377 5.87603 5.99831 6.01893 6.05201 6.10113 6.18664 6.27795 6.34382 6.35862 6.44972 6.46682 6.58238 6.63931 6.71493 6.88002 6.94983 7.58898 7.65811 7.71919 8.23370 8.35328 9.47293 10.03310 10.38488 11.39245 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003439 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.531803 B = 8139.213290 C = 9873.871000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.554 3.446 7 O -0.545 6.545 8 C -0.115 4.115 9 C -0.054 4.054 10 C -0.119 4.119 11 C -0.012 4.012 12 C -0.161 4.161 13 C 0.080 3.920 14 N -0.492 5.492 15 C 0.158 3.842 16 C -0.118 4.118 17 C -0.047 4.047 18 C 0.103 3.897 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.051 0.949 22 N -0.719 5.719 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.145 0.855 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.886 10.888 -6.064 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.342 3.658 7 O -0.424 6.424 8 C -0.118 4.118 9 C -0.073 4.073 10 C -0.137 4.137 11 C -0.017 4.017 12 C -0.180 4.180 13 C -0.062 4.062 14 N -0.200 5.200 15 C -0.013 4.013 16 C -0.121 4.121 17 C -0.068 4.068 18 C -0.019 4.019 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.163 0.837 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.161 10.352 -6.167 19.366 hybrid contribution -0.558 0.016 0.499 0.748 sum 14.603 10.367 -5.668 18.785 Atomic orbital electron populations 1.21667 0.94116 1.03250 1.00483 1.21710 0.96582 0.98828 0.95702 0.91627 1.21703 0.78041 1.01830 0.98706 1.48101 1.07228 1.58918 1.17923 1.18267 0.86190 0.77982 0.83400 1.90771 1.74839 1.47799 1.28951 1.19956 0.93856 0.95103 1.02926 1.20870 0.93645 0.97396 0.95431 1.20836 0.94247 0.97276 1.01313 1.18263 0.93674 0.93436 0.96360 1.21901 0.93855 1.00051 1.02238 1.22239 1.00271 0.88227 0.95503 1.67491 1.08038 1.29852 1.14583 1.23367 0.89924 0.96584 0.91442 1.18954 0.94250 0.95286 1.03569 1.21571 0.92965 0.98043 0.94204 1.22070 0.97112 0.99027 0.83681 1.22524 1.00463 0.98649 0.97428 1.20215 0.90741 0.87393 0.94842 0.93089 1.42482 1.78988 1.07695 1.06950 1.19257 1.37219 0.93856 0.86563 0.91210 1.24692 1.02218 0.97170 0.96581 1.69651 1.51722 1.12998 1.23612 0.86183 0.77314 0.79985 0.83071 1.20642 1.21973 1.21942 0.92765 0.93731 0.90983 0.90355 0.89686 0.84854 0.84620 0.84414 0.83009 0.81485 0.83705 0.90533 0.89362 0.93336 0.90682 0.78106 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.05 37.16 0.34 -1.80 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.94 5.41 -3.71 -0.02 1.92 16 5 N -0.59 -9.21 2.97 -173.86 -0.52 -9.73 16 6 C 0.55 8.73 7.20 -12.36 -0.09 8.64 16 7 O -0.54 -10.15 16.47 5.31 0.09 -10.06 16 8 C -0.12 -1.50 5.00 -104.97 -0.53 -2.03 16 9 C -0.05 -0.60 9.63 -39.53 -0.38 -0.98 16 10 C -0.12 -1.13 9.77 -39.63 -0.39 -1.52 16 11 C -0.01 -0.13 5.75 -106.74 -0.61 -0.74 16 12 C -0.16 -1.40 9.87 -39.40 -0.39 -1.79 16 13 C 0.08 0.76 11.07 -17.95 -0.20 0.56 16 14 N -0.49 -5.64 10.30 -13.12 -0.14 -5.78 16 15 C 0.16 1.71 11.05 -16.94 -0.19 1.52 16 16 C -0.12 -1.33 5.74 -106.88 -0.61 -1.94 16 17 C -0.05 -0.56 7.12 -38.75 -0.28 -0.83 16 18 C 0.10 1.56 5.11 -3.68 -0.02 1.54 16 19 C -0.15 -2.38 5.78 -26.61 -0.15 -2.54 16 20 C 0.18 3.20 2.53 -67.89 -0.17 3.03 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -15.94 3.64 -53.39 -0.19 -16.14 16 23 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -26.42 13.06 55.49 0.72 -25.70 16 27 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 34 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 35 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.15 1.60 7.08 -52.49 -0.37 1.23 16 42 H 0.08 1.01 4.58 -51.93 -0.24 0.77 16 43 H 0.09 1.55 7.74 -51.93 -0.40 1.14 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.38 9.13 5.93 -40.82 -0.24 8.89 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -30.77 377.23 -10.10 -40.87 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.55 Total: 9.95 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -4.17 Total: -5.47 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.12 Total: -57.34 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.77 -10.10 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.307 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds