Wall clock time and date at job start Tue Mar 31 2020 22:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.49914 * 2 1 4 4 C 1.53190 * 109.49868 * 239.89732 * 2 1 3 5 5 N 1.46924 * 108.77623 * 185.41423 * 4 2 1 6 6 C 1.34783 * 120.63245 * 233.62979 * 5 4 2 7 7 O 1.21563 * 119.99529 * 356.22920 * 6 5 4 8 8 C 1.47768 * 120.00358 * 176.22631 * 6 5 4 9 9 C 1.40651 * 119.69983 * 231.33343 * 8 6 5 10 10 C 1.35849 * 120.87527 * 180.02562 * 9 8 6 11 11 C 1.40394 * 119.84692 * 359.97438 * 10 9 8 12 12 C 1.40643 * 121.97693 * 180.02562 * 11 10 9 13 13 C 1.36218 * 118.72920 * 179.97438 * 12 11 10 14 14 N 1.32600 * 121.90108 * 359.97438 * 13 12 11 15 15 C 1.31244 * 122.73955 * 0.02562 * 14 13 12 16 16 C 1.40541 * 119.88961 * 359.97438 * 15 14 13 17 17 C 1.38570 * 119.70108 * 51.06012 * 8 6 5 18 18 C 1.46990 * 118.75784 * 53.60735 * 5 4 2 19 19 C 1.53192 * 108.74058 * 306.41287 * 18 5 4 20 20 C 1.53037 * 109.33940 * 54.61617 * 19 18 5 21 21 H 1.09003 * 109.45895 * 178.60426 * 20 19 18 22 22 N 1.46496 * 109.46049 * 58.64370 * 20 19 18 23 23 C 1.36938 * 120.00205 * 84.99571 * 22 20 19 24 24 H 1.07998 * 119.99808 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00181 * 180.02562 * 23 22 20 26 26 N 1.31613 * 120.00211 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99835 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47371 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46952 * 120.00044 * 27 25 23 30 30 H 1.48504 * 109.47171 * 239.99969 * 27 25 23 31 31 H 1.09006 * 109.46719 * 299.94173 * 1 2 3 32 32 H 1.08998 * 109.46868 * 59.93933 * 1 2 3 33 33 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.58575 * 305.20123 * 4 2 1 35 35 H 1.09000 * 109.58661 * 65.62769 * 4 2 1 36 36 H 1.07995 * 119.56110 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.07469 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.63455 * 359.95102 * 12 11 10 39 39 H 1.07995 * 119.05391 * 179.97438 * 13 12 11 40 40 H 1.07997 * 120.05569 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.34334 * 0.02562 * 17 8 6 42 42 H 1.08998 * 109.63232 * 186.61625 * 18 5 4 43 43 H 1.09005 * 109.57842 * 66.17294 * 18 5 4 44 44 H 1.09004 * 109.49293 * 294.65236 * 19 18 5 45 45 H 1.08996 * 109.49954 * 174.59092 * 19 18 5 46 46 H 0.96999 * 120.00241 * 265.00111 * 22 20 19 47 47 H 0.97002 * 120.00113 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7243 -1.2493 5 7 3.5046 -0.8296 -1.1692 6 6 4.2812 -0.3864 -2.1777 7 8 3.7710 0.0429 -3.1942 8 6 5.7527 -0.4224 -2.0479 9 6 6.5039 0.7377 -2.3088 10 6 7.8578 0.7313 -2.1973 11 6 8.5220 -0.4455 -1.8165 12 6 9.9213 -0.5023 -1.6868 13 6 10.4969 -1.6788 -1.3127 14 7 9.7765 -2.7650 -1.0687 15 6 8.4681 -2.7863 -1.1693 16 6 7.7758 -1.6237 -1.5490 17 6 6.3796 -1.5973 -1.6647 18 6 4.1060 -1.4269 0.0317 19 6 3.5709 -0.6946 1.2663 20 6 2.0408 -0.7226 1.2486 21 1 1.6582 -0.2236 2.1390 22 7 1.5783 -2.1125 1.2316 23 6 1.4469 -2.8049 2.4057 24 1 1.6837 -2.3261 3.3443 25 6 1.0091 -4.1220 2.3896 26 7 0.7209 -4.7058 1.2457 27 14 0.8291 -5.0662 3.9914 28 1 1.2127 -4.1907 5.1278 29 1 -0.5820 -5.4989 4.1549 30 1 1.7129 -6.2593 3.9647 31 1 -0.3633 0.5130 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6052 -1.7221 -1.2973 35 1 1.7638 -0.1587 -2.1388 36 1 5.9977 1.6454 -2.6025 37 1 8.4219 1.6295 -2.4012 38 1 10.5278 0.3701 -1.8804 39 1 11.5710 -1.7285 -1.2119 40 1 7.9243 -3.6956 -0.9598 41 1 5.7985 -2.4846 -1.4614 42 1 5.1903 -1.3248 -0.0123 43 1 3.8382 -2.4820 0.0881 44 1 3.9159 0.3393 1.2539 45 1 3.9335 -1.1884 2.1678 46 1 1.3653 -2.5425 0.3886 47 1 0.4147 -5.6261 1.2344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036245384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:07 Heat of formation + Delta-G solvation = 18.634030 kcal Electronic energy + Delta-G solvation = -29529.715400 eV Core-core repulsion = 25676.755661 eV Total energy + Delta-G solvation = -3852.959739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.10782 -41.16347 -39.27796 -37.98014 -35.93802 -34.67636 -33.87254 -32.99968 -32.30882 -30.96788 -30.83009 -27.72503 -26.85033 -25.60973 -25.12908 -24.64811 -23.41957 -22.98025 -21.53993 -19.93175 -19.26617 -19.03165 -18.39510 -17.82247 -17.41033 -16.76633 -16.54477 -16.15743 -15.98374 -15.87342 -15.58643 -15.25619 -15.16779 -14.93368 -14.81100 -14.55941 -14.32866 -14.16750 -14.05901 -13.58440 -13.30057 -12.98095 -12.88875 -12.86818 -12.84564 -12.65622 -12.47254 -12.34590 -12.05097 -11.98040 -11.92860 -11.58572 -11.25605 -11.17336 -11.04407 -10.80979 -10.48015 -10.18691 -9.67151 -9.08361 -8.90729 -7.87803 -5.13820 -0.78598 -0.28191 0.78705 1.43978 1.49429 1.51521 1.59373 1.83971 2.12555 2.60563 3.02134 3.26499 3.45469 3.46533 3.59181 3.68434 3.81864 3.83833 3.87785 3.96729 4.03046 4.07979 4.09622 4.30711 4.32713 4.38454 4.50800 4.62051 4.64813 4.65595 4.70202 4.78130 4.83523 4.85833 4.92352 4.95595 5.02579 5.13679 5.17164 5.22048 5.27904 5.29028 5.32042 5.47703 5.59121 5.60831 5.63088 5.72162 6.33277 6.34243 6.97170 6.98106 7.42097 8.17707 8.41495 9.35472 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003439 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.531803 B = 8139.213290 C = 9873.871000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.123 3.877 5 N -0.591 5.591 6 C 0.556 3.444 7 O -0.577 6.577 8 C -0.130 4.130 9 C -0.068 4.068 10 C -0.100 4.100 11 C -0.026 4.026 12 C -0.149 4.149 13 C 0.069 3.931 14 N -0.513 5.513 15 C 0.145 3.855 16 C -0.128 4.128 17 C -0.050 4.050 18 C 0.113 3.887 19 C -0.142 4.142 20 C 0.173 3.827 21 H 0.048 0.952 22 N -0.724 5.724 23 C -0.225 4.225 24 H 0.075 0.925 25 C -0.070 4.070 26 N -0.967 5.967 27 Si 0.960 3.040 28 H -0.268 1.268 29 H -0.301 1.301 30 H -0.298 1.298 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.177 0.823 41 H 0.142 0.858 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.458 13.229 -5.628 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.105 0.895 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.345 3.655 7 O -0.459 6.459 8 C -0.133 4.133 9 C -0.088 4.088 10 C -0.118 4.118 11 C -0.031 4.031 12 C -0.168 4.168 13 C -0.074 4.074 14 N -0.221 5.221 15 C -0.026 4.026 16 C -0.130 4.130 17 C -0.071 4.071 18 C -0.009 4.009 19 C -0.183 4.183 20 C 0.064 3.936 21 H 0.066 0.934 22 N -0.365 5.365 23 C -0.357 4.357 24 H 0.093 0.907 25 C -0.263 4.263 26 N -0.619 5.619 27 Si 0.791 3.209 28 H -0.192 1.192 29 H -0.229 1.229 30 H -0.226 1.226 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.189 0.811 38 H 0.192 0.808 39 H 0.196 0.804 40 H 0.194 0.806 41 H 0.160 0.840 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.757 12.735 -5.699 22.582 hybrid contribution -1.237 -0.635 0.329 1.429 sum 16.520 12.100 -5.369 21.170 Atomic orbital electron populations 1.21603 0.93923 1.01566 1.01857 1.21631 0.96678 0.99338 0.94103 0.89488 1.21563 0.78733 1.00531 0.99090 1.48111 1.06910 1.58879 1.18169 1.18696 0.87383 0.76867 0.82533 1.90744 1.75775 1.49320 1.30026 1.19828 0.92045 0.96499 1.04929 1.20986 0.94450 0.96971 0.96356 1.21175 0.93572 0.98049 0.98983 1.18609 0.94745 0.93406 0.96349 1.22265 0.93195 1.00982 1.00395 1.22763 1.01538 0.88009 0.95082 1.67513 1.08299 1.31232 1.15047 1.23557 0.90078 0.97065 0.91875 1.19033 0.93916 0.96100 1.03965 1.21530 0.93489 0.97627 0.94440 1.21946 0.98422 0.97209 0.83303 1.22403 0.98515 1.00103 0.97275 1.20430 0.92100 0.85233 0.95811 0.93390 1.42588 1.79078 1.09249 1.05616 1.19586 1.34645 0.93815 0.87666 0.90735 1.25336 1.03596 0.98390 0.98937 1.69797 1.53909 1.12802 1.25360 0.85257 0.76369 0.78662 0.80577 1.19201 1.22882 1.22597 0.92130 0.91616 0.94112 0.92807 0.89611 0.84205 0.81075 0.80835 0.80385 0.80581 0.84009 0.88196 0.92200 0.90856 0.91468 0.79251 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.05 71.98 0.65 -3.38 16 2 C -0.10 -3.01 2.67 -10.72 -0.03 -3.04 16 3 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 4 C 0.12 4.08 5.41 86.36 0.47 4.55 16 5 N -0.59 -18.45 2.97 -822.22 -2.44 -20.89 16 6 C 0.56 17.43 7.20 86.76 0.62 18.06 16 7 O -0.58 -21.62 16.47 -3.91 -0.06 -21.68 16 8 C -0.13 -3.28 5.00 -20.09 -0.10 -3.38 16 9 C -0.07 -1.38 9.63 22.30 0.21 -1.17 16 10 C -0.10 -1.56 9.77 22.24 0.22 -1.35 16 11 C -0.03 -0.47 5.75 -21.23 -0.12 -0.59 16 12 C -0.15 -2.03 9.87 22.39 0.22 -1.81 16 13 C 0.07 1.09 11.07 84.11 0.93 2.02 16 14 N -0.51 -10.98 10.30 -195.42 -2.01 -12.99 16 15 C 0.15 3.02 11.05 85.34 0.94 3.96 16 16 C -0.13 -2.71 5.74 -21.33 -0.12 -2.84 16 17 C -0.05 -1.16 7.12 22.81 0.16 -1.00 16 18 C 0.11 3.42 5.11 86.35 0.44 3.86 16 19 C -0.14 -4.37 5.78 30.67 0.18 -4.19 16 20 C 0.17 6.11 2.53 45.02 0.11 6.23 16 21 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 22 N -0.72 -32.72 3.64 -322.82 -1.18 -33.89 16 23 C -0.22 -11.51 9.93 84.03 0.83 -10.67 16 24 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 25 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 26 N -0.97 -56.69 13.06 21.65 0.28 -56.41 16 27 Si 0.96 44.65 29.55 68.60 2.03 46.68 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 30 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.50 7.54 -2.39 -0.02 1.48 16 34 H 0.05 2.05 6.64 -2.38 -0.02 2.03 16 35 H 0.09 2.83 7.02 -2.39 -0.02 2.81 16 36 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.14 3.23 7.08 -2.91 -0.02 3.21 16 42 H 0.10 2.57 4.58 -2.39 -0.01 2.55 16 43 H 0.06 2.17 7.74 -2.38 -0.02 2.15 16 44 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.37 18.51 5.93 -92.71 -0.55 17.96 16 47 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -67.59 377.23 3.15 -64.45 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.44 Total: 32.83 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.09 Total: 1.92 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -5.35 Total: -124.18 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.06 Total: -21.68 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.59 3.15 -64.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.079 kcal (2) G-P(sol) polarization free energy of solvation -67.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds