Wall clock time and date at job start Tue Mar 31 2020 22:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.49599 * 2 1 4 4 C 1.53185 * 109.49925 * 120.06681 * 2 1 3 5 5 N 1.46918 * 108.77908 * 174.58417 * 4 2 1 6 6 C 1.34782 * 120.63233 * 126.36775 * 5 4 2 7 7 O 1.21563 * 119.99563 * 3.88042 * 6 5 4 8 8 C 1.47770 * 119.99831 * 183.88381 * 6 5 4 9 9 C 1.40656 * 119.70028 * 128.87864 * 8 6 5 10 10 C 1.35847 * 120.88182 * 179.97438 * 9 8 6 11 11 C 1.40398 * 119.84481 * 359.97438 * 10 9 8 12 12 C 1.40632 * 121.98657 * 180.02562 * 11 10 9 13 13 C 1.36224 * 118.72937 * 179.97438 * 12 11 10 14 14 N 1.32597 * 121.90567 * 0.02562 * 13 12 11 15 15 C 1.31238 * 122.73699 * 359.69345 * 14 13 12 16 16 C 1.40547 * 119.88194 * 0.58587 * 15 14 13 17 17 C 1.38562 * 119.70602 * 308.90025 * 8 6 5 18 18 C 1.46931 * 118.73765 * 306.64920 * 5 4 2 19 19 C 1.52753 * 109.00958 * 53.30430 * 18 5 4 20 20 C 1.53038 * 109.38537 * 305.58759 * 19 18 5 21 21 H 1.09000 * 109.45395 * 301.23263 * 20 19 18 22 22 N 1.46495 * 109.46215 * 181.26311 * 20 19 18 23 23 C 1.36929 * 120.00301 * 84.93549 * 22 20 19 24 24 H 1.08004 * 120.00259 * 359.97438 * 23 22 20 25 25 C 1.38818 * 120.00317 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99988 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00121 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47120 * 60.00062 * 27 25 23 29 29 H 1.48498 * 109.47204 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.46958 * 299.99997 * 27 25 23 31 31 H 1.09004 * 109.46975 * 299.93506 * 1 2 3 32 32 H 1.08998 * 109.47172 * 59.93400 * 1 2 3 33 33 H 1.09004 * 109.47357 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.58679 * 54.79263 * 4 2 1 35 35 H 1.08999 * 109.70464 * 294.44227 * 4 2 1 36 36 H 1.08001 * 119.55736 * 0.02562 * 9 8 6 37 37 H 1.07996 * 120.07767 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.63746 * 359.95427 * 12 11 10 39 39 H 1.08001 * 119.04331 * 180.02562 * 13 12 11 40 40 H 1.07998 * 120.05635 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.34195 * 0.02562 * 17 8 6 42 42 H 1.09002 * 109.58773 * 173.14086 * 18 5 4 43 43 H 1.08998 * 109.58451 * 293.56097 * 18 5 4 44 44 H 1.08998 * 109.56425 * 185.55692 * 19 18 5 45 45 H 1.09000 * 109.38757 * 65.51880 * 19 18 5 46 46 H 0.97006 * 120.00097 * 264.93013 * 22 20 19 47 47 H 0.96996 * 120.00420 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2497 5 7 3.5046 -0.8289 1.1697 6 6 4.2812 -0.3851 2.1780 7 8 3.7710 0.0431 3.1949 8 6 5.7527 -0.4190 2.0471 9 6 6.5029 0.7409 2.3123 10 6 7.8567 0.7365 2.2000 11 6 8.5220 -0.4383 1.8150 12 6 9.9213 -0.4936 1.6852 13 6 10.4980 -1.6687 1.3079 14 7 9.7786 -2.7548 1.0609 15 6 8.4707 -2.7791 1.1665 16 6 7.7770 -1.6164 1.5438 17 6 6.3811 -1.5929 1.6637 18 6 4.1055 -1.4216 -0.0330 19 6 3.5708 -0.6953 -1.2659 20 6 2.0408 -0.7234 -1.2482 21 1 1.6968 -1.7576 -1.2347 22 7 1.5265 -0.0536 -2.4453 23 6 1.3963 -0.7501 -3.6170 24 1 1.6732 -1.7932 -3.6588 25 6 0.9095 -0.1153 -4.7515 26 7 0.5735 1.1563 -4.7010 27 14 0.7326 -1.0653 -6.3501 28 1 -0.1990 -2.2041 -6.1487 29 1 0.1959 -0.1665 -7.4033 30 1 2.0608 -1.5804 -6.7693 31 1 -0.3633 0.5128 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6052 -1.7213 1.2984 35 1 1.7638 -0.1595 2.1402 36 1 5.9958 1.6468 2.6100 37 1 8.4199 1.6344 2.4072 38 1 10.5270 0.3789 1.8806 39 1 11.5722 -1.7169 1.2071 40 1 7.9278 -3.6884 0.9551 41 1 5.8010 -2.4810 1.4603 42 1 5.1895 -1.3160 0.0102 43 1 3.8412 -2.4774 -0.0910 44 1 3.9333 -1.1902 -2.1668 45 1 3.9159 0.3386 -1.2548 46 1 1.2781 0.8834 -2.4079 47 1 0.2329 1.5998 -5.4936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036245387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:10 Heat of formation + Delta-G solvation = 14.566772 kcal Electronic energy + Delta-G solvation = -29049.035255 eV Core-core repulsion = 25195.899147 eV Total energy + Delta-G solvation = -3853.136109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.09509 -41.12737 -39.18059 -37.97834 -36.23586 -34.68651 -33.87407 -33.07249 -32.30922 -31.13792 -30.78185 -27.74065 -26.88932 -25.63308 -24.89670 -24.19706 -23.35549 -23.01477 -21.61241 -20.66821 -19.13691 -19.00106 -18.41953 -17.84148 -17.42964 -16.78669 -16.65939 -16.17460 -15.95344 -15.71870 -15.52451 -15.32411 -15.19229 -14.92299 -14.84017 -14.56170 -14.25596 -14.18649 -13.91878 -13.65721 -13.24592 -13.12177 -12.88912 -12.85444 -12.80428 -12.73286 -12.50647 -12.33227 -12.19569 -12.06130 -11.84004 -11.67135 -11.25783 -11.15451 -11.07477 -10.79908 -10.47492 -10.18610 -9.73991 -9.09573 -8.93911 -7.90147 -5.17644 -0.76813 -0.28537 0.80097 1.42394 1.49542 1.51361 1.57165 1.80613 2.14705 2.58911 3.03209 3.25658 3.43318 3.47220 3.60459 3.68043 3.79281 3.80884 3.83490 3.96006 4.01125 4.08172 4.10016 4.27065 4.33173 4.37379 4.48608 4.64890 4.65435 4.66929 4.77128 4.77516 4.78454 4.81396 4.85003 4.94632 4.96664 5.01910 5.15324 5.21567 5.30024 5.32770 5.40357 5.49435 5.56361 5.59451 5.62499 5.71817 6.28271 6.31477 6.97507 6.98295 7.37772 8.14103 8.36946 9.33306 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.002924 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.882665 B = 9572.536332 C =11036.141246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.051 0.949 4 C 0.126 3.874 5 N -0.596 5.596 6 C 0.559 3.441 7 O -0.576 6.576 8 C -0.136 4.136 9 C -0.073 4.073 10 C -0.107 4.107 11 C -0.027 4.027 12 C -0.156 4.156 13 C 0.071 3.929 14 N -0.514 5.514 15 C 0.152 3.848 16 C -0.131 4.131 17 C -0.041 4.041 18 C 0.105 3.895 19 C -0.143 4.143 20 C 0.180 3.820 21 H 0.052 0.948 22 N -0.732 5.732 23 C -0.230 4.230 24 H 0.079 0.921 25 C -0.077 4.077 26 N -0.972 5.972 27 Si 0.967 3.033 28 H -0.278 1.278 29 H -0.302 1.302 30 H -0.278 1.278 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.191 0.809 41 H 0.163 0.837 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.040 0.960 46 H 0.370 0.630 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.398 -6.212 16.012 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.069 0.931 4 C 0.004 3.996 5 N -0.327 5.327 6 C 0.348 3.652 7 O -0.457 6.457 8 C -0.139 4.139 9 C -0.092 4.092 10 C -0.125 4.125 11 C -0.032 4.032 12 C -0.175 4.175 13 C -0.071 4.071 14 N -0.222 5.222 15 C -0.019 4.019 16 C -0.133 4.133 17 C -0.062 4.062 18 C -0.017 4.017 19 C -0.184 4.184 20 C 0.071 3.929 21 H 0.070 0.930 22 N -0.370 5.370 23 C -0.362 4.362 24 H 0.097 0.903 25 C -0.269 4.269 26 N -0.623 5.623 27 Si 0.797 3.203 28 H -0.204 1.204 29 H -0.228 1.228 30 H -0.205 1.205 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.181 0.819 38 H 0.185 0.815 39 H 0.194 0.806 40 H 0.207 0.793 41 H 0.180 0.820 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.201 0.799 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.696 -6.835 16.156 24.918 hybrid contribution -1.025 1.270 -1.022 1.926 sum 16.671 -5.564 15.134 23.194 Atomic orbital electron populations 1.21575 0.93823 1.02159 1.01209 1.21611 0.96768 0.99045 0.94598 0.93061 1.21665 0.78412 1.01775 0.97757 1.48154 1.07079 1.59494 1.17925 1.18635 0.87255 0.76601 0.82690 1.90758 1.75755 1.48774 1.30373 1.19838 0.92213 0.96550 1.05324 1.20975 0.94521 0.97257 0.96495 1.21121 0.93669 0.98174 0.99503 1.18603 0.94727 0.93637 0.96267 1.22227 0.93362 1.00985 1.00942 1.22706 1.01509 0.88017 0.94881 1.67522 1.08657 1.30863 1.15140 1.23704 0.89876 0.97095 0.91227 1.19106 0.94283 0.95881 1.04016 1.21632 0.93195 0.97690 0.93641 1.22121 0.99262 0.98053 0.82251 1.22405 0.98546 0.99911 0.97517 1.20431 0.91514 0.95500 0.85421 0.92987 1.42586 1.76851 1.10864 1.06741 1.19568 1.33734 0.94458 0.88463 0.90328 1.25483 1.03227 0.96879 1.01275 1.69810 1.52049 1.11128 1.29303 0.85300 0.77902 0.77376 0.79733 1.20434 1.22838 1.20452 0.91709 0.94116 0.92094 0.89228 0.89642 0.85084 0.81926 0.81540 0.80648 0.79270 0.81967 0.87994 0.88433 0.91374 0.94120 0.79857 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.02 71.98 0.65 -3.41 16 2 C -0.10 -3.16 2.46 -10.72 -0.03 -3.18 16 3 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.13 3.33 5.71 86.36 0.49 3.83 16 5 N -0.60 -15.13 2.98 -823.25 -2.45 -17.59 16 6 C 0.56 15.32 7.20 86.76 0.62 15.95 16 7 O -0.58 -19.69 16.47 -3.91 -0.06 -19.75 16 8 C -0.14 -3.04 5.00 -20.09 -0.10 -3.14 16 9 C -0.07 -1.49 9.62 22.31 0.21 -1.28 16 10 C -0.11 -1.74 9.77 22.24 0.22 -1.52 16 11 C -0.03 -0.46 5.75 -21.24 -0.12 -0.59 16 12 C -0.16 -2.08 9.87 22.38 0.22 -1.86 16 13 C 0.07 1.04 11.07 84.11 0.93 1.97 16 14 N -0.51 -9.37 10.30 -195.41 -2.01 -11.38 16 15 C 0.15 2.41 11.05 85.34 0.94 3.36 16 16 C -0.13 -2.28 5.74 -21.32 -0.12 -2.41 16 17 C -0.04 -0.72 7.13 22.81 0.16 -0.56 16 18 C 0.11 2.36 5.33 86.22 0.46 2.82 16 19 C -0.14 -4.48 5.64 30.52 0.17 -4.31 16 20 C 0.18 6.45 2.19 45.02 0.10 6.55 16 21 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 22 N -0.73 -34.81 4.41 -322.82 -1.42 -36.23 16 23 C -0.23 -12.11 9.93 84.04 0.83 -11.28 16 24 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 25 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 26 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 27 Si 0.97 45.05 29.55 68.60 2.03 47.08 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 30 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 31 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.04 1.55 7.36 -2.39 -0.02 1.53 16 33 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.09 2.39 7.02 -2.39 -0.02 2.37 16 36 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.16 2.05 7.09 -2.91 -0.02 2.02 16 42 H 0.10 1.98 4.59 -2.39 -0.01 1.97 16 43 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.37 19.52 7.50 -92.70 -0.70 18.83 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -71.26 381.15 2.77 -68.49 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.29 Total: 30.61 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.12 Total: -2.88 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -5.61 Total: -123.55 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.06 Total: -19.75 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.26 2.77 -68.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.055 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds