Wall clock time and date at job start Tue Mar 31 2020 22:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49752 * 2 1 4 4 C 1.53199 * 109.49597 * 120.09110 * 2 1 3 5 5 N 1.46925 * 108.77087 * 174.58735 * 4 2 1 6 6 C 1.34774 * 120.62584 * 126.42022 * 5 4 2 7 7 O 1.21564 * 120.00171 * 354.14303 * 6 5 4 8 8 C 1.47779 * 120.00113 * 174.15073 * 6 5 4 9 9 C 1.40647 * 119.70290 * 138.33612 * 8 6 5 10 10 C 1.35846 * 120.88010 * 180.02562 * 9 8 6 11 11 C 1.40397 * 119.84222 * 359.97241 * 10 9 8 12 12 C 1.40635 * 121.97289 * 179.97438 * 11 10 9 13 13 C 1.36231 * 118.72848 * 180.02562 * 12 11 10 14 14 N 1.32594 * 121.89836 * 0.02562 * 13 12 11 15 15 C 1.31244 * 122.74321 * 359.97438 * 14 13 12 16 16 C 1.40548 * 119.88614 * 0.02562 * 15 14 13 17 17 C 1.38565 * 119.69634 * 318.06456 * 8 6 5 18 18 C 1.46918 * 118.74123 * 306.38901 * 5 4 2 19 19 C 1.53190 * 108.77628 * 53.61293 * 18 5 4 20 20 C 1.53034 * 109.50037 * 239.93095 * 2 1 3 21 21 H 1.09004 * 109.46149 * 58.67533 * 20 2 1 22 22 N 1.46502 * 109.46243 * 298.70480 * 20 2 1 23 23 C 1.36938 * 120.00392 * 154.99838 * 22 20 2 24 24 H 1.07995 * 119.99751 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99930 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00200 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99778 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46950 * 180.02562 * 27 25 23 29 29 H 1.48504 * 109.46979 * 299.99948 * 27 25 23 30 30 H 1.48492 * 109.47446 * 59.99631 * 27 25 23 31 31 H 1.09003 * 109.46964 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47188 * 300.06740 * 1 2 3 33 33 H 1.09004 * 109.47059 * 60.06734 * 1 2 3 34 34 H 1.09002 * 109.58267 * 294.37608 * 4 2 1 35 35 H 1.08997 * 109.58212 * 54.80055 * 4 2 1 36 36 H 1.08000 * 119.56487 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.07745 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.64004 * 0.02562 * 12 11 10 39 39 H 1.07995 * 119.04649 * 179.97438 * 13 12 11 40 40 H 1.07994 * 120.05482 * 179.97438 * 15 14 13 41 41 H 1.07995 * 120.34879 * 0.02562 * 17 8 6 42 42 H 1.09004 * 109.58569 * 173.39976 * 18 5 4 43 43 H 1.09001 * 109.59063 * 293.82705 * 18 5 4 44 44 H 1.09000 * 109.50018 * 185.41134 * 19 18 5 45 45 H 1.09007 * 109.49782 * 65.31527 * 19 18 5 46 46 H 0.97010 * 119.99605 * 335.00024 * 22 20 2 47 47 H 0.97006 * 120.00016 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2495 5 7 3.5046 -0.8293 1.1694 6 6 4.2810 -0.3869 2.1783 7 8 3.7807 0.2004 3.1178 8 6 5.7405 -0.6154 2.1424 9 6 6.6166 0.4107 2.5395 10 6 7.9624 0.2267 2.5155 11 6 8.4920 -1.0020 2.0902 12 6 9.8773 -1.2409 2.0471 13 6 10.3190 -2.4577 1.6228 14 7 9.4818 -3.4165 1.2512 15 6 8.1782 -3.2653 1.2652 16 6 7.6190 -2.0467 1.6865 17 6 6.2334 -1.8408 1.7232 18 6 4.1052 -1.4266 -0.0309 19 6 3.5709 -0.6948 -1.2660 20 6 2.0408 -0.7228 -1.2484 21 1 1.6584 -0.2239 -2.1389 22 7 1.5784 -2.1128 -1.2312 23 6 1.4483 -2.8057 -2.4052 24 1 1.6869 -2.3276 -3.3437 25 6 1.0096 -4.1226 -2.3888 26 7 0.7192 -4.7054 -1.2450 27 14 0.8327 -5.0680 -3.9902 28 1 0.3509 -6.4429 -3.7026 29 1 -0.1439 -4.3754 -4.8687 30 1 2.1499 -5.1371 -4.6724 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.7637 -0.1583 2.1389 35 1 1.6052 -1.7218 1.2977 36 1 6.2142 1.3578 2.8671 37 1 8.6232 1.0237 2.8229 38 1 10.5775 -0.4744 2.3447 39 1 11.3817 -2.6466 1.5872 40 1 7.5364 -4.0757 0.9527 41 1 5.5568 -2.6272 1.4229 42 1 5.1896 -1.3245 0.0136 43 1 3.8375 -2.4818 -0.0872 44 1 3.9335 -1.1892 -2.1672 45 1 3.9159 0.3392 -1.2539 46 1 1.3644 -2.5423 -0.3882 47 1 0.4130 -5.6258 -1.2336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036245389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:15 Heat of formation + Delta-G solvation = 35.960229 kcal Electronic energy + Delta-G solvation = -29552.089168 eV Core-core repulsion = 25699.880749 eV Total energy + Delta-G solvation = -3852.208419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.19295 -40.02692 -37.98532 -36.99095 -34.46807 -33.37623 -32.71042 -31.50404 -31.40249 -30.02417 -29.21497 -26.47290 -25.49557 -24.44848 -23.78722 -23.47784 -22.53715 -21.67039 -20.40082 -18.59799 -18.12207 -17.40542 -17.30569 -16.87800 -16.27501 -15.63112 -15.28907 -14.97024 -14.69243 -14.50587 -14.35206 -14.12828 -14.03774 -13.81306 -13.75092 -13.33670 -13.17029 -12.92279 -12.55489 -12.33551 -12.18074 -12.08338 -11.62052 -11.57120 -11.39209 -11.21802 -10.92616 -10.81474 -10.60241 -10.52758 -10.32851 -10.24890 -9.88123 -9.88053 -9.61712 -9.57901 -9.31693 -8.96518 -8.36156 -8.23588 -7.01818 -5.82677 -3.11307 0.01711 0.54321 1.58761 2.46684 3.01298 3.23364 3.39761 3.45342 3.45979 3.83164 4.16817 4.25299 4.42739 4.48172 4.54451 4.58661 4.81941 4.86527 4.99844 5.14355 5.26654 5.32085 5.34822 5.42705 5.49269 5.53360 5.56454 5.62042 5.68280 5.71182 5.77698 5.88376 6.00925 6.02435 6.05069 6.11284 6.18755 6.28396 6.35252 6.36041 6.46048 6.47695 6.59216 6.64251 6.72412 6.88478 6.95595 7.59675 7.65075 7.73130 8.24319 8.35777 9.47580 10.03521 10.38854 11.39508 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003529 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.818393 B = 7932.447020 C = 9809.177787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.554 3.446 7 O -0.546 6.546 8 C -0.120 4.120 9 C -0.051 4.051 10 C -0.122 4.122 11 C -0.010 4.010 12 C -0.162 4.162 13 C 0.082 3.918 14 N -0.492 5.492 15 C 0.160 3.840 16 C -0.121 4.121 17 C -0.044 4.044 18 C 0.104 3.896 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.292 1.292 29 H -0.287 1.287 30 H -0.287 1.287 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.147 0.853 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.853 9.546 6.708 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.323 5.323 6 C 0.342 3.658 7 O -0.425 6.425 8 C -0.124 4.124 9 C -0.071 4.071 10 C -0.140 4.140 11 C -0.015 4.015 12 C -0.182 4.182 13 C -0.061 4.061 14 N -0.200 5.200 15 C -0.012 4.012 16 C -0.123 4.123 17 C -0.064 4.064 18 C -0.018 4.018 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.214 1.214 30 H -0.213 1.213 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.186 0.814 41 H 0.165 0.835 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.048 9.022 6.767 18.805 hybrid contribution -0.450 0.057 -0.479 0.659 sum 14.599 9.079 6.288 18.306 Atomic orbital electron populations 1.21668 0.94152 1.03218 1.00482 1.21702 0.96557 0.98875 0.95669 0.91596 1.21709 0.78018 1.01739 0.98842 1.48055 1.07242 1.59250 1.17757 1.18257 0.86012 0.78863 0.82626 1.90759 1.74864 1.42128 1.34733 1.19970 0.93838 0.95435 1.03113 1.20907 0.92624 0.98570 0.94975 1.20839 0.95245 0.96351 1.01523 1.18272 0.93465 0.93801 0.96009 1.21903 0.94630 0.99252 1.02403 1.22248 0.99755 0.89191 0.94934 1.67495 1.04457 1.33167 1.14901 1.23389 0.91331 0.94700 0.91753 1.18970 0.94031 0.95970 1.03318 1.21681 0.93995 0.96861 0.93875 1.22063 0.96965 0.99035 0.83709 1.22530 1.00503 0.98670 0.97386 1.20215 0.90726 0.87388 0.94866 0.93100 1.42467 1.79012 1.07675 1.06932 1.19168 1.37422 0.93900 0.86557 0.91325 1.24685 1.02157 0.97158 0.96573 1.69632 1.51561 1.13130 1.23706 0.86326 0.77776 0.79236 0.83163 1.21781 1.21382 1.21339 0.91004 0.93734 0.92785 0.89641 0.90361 0.84742 0.84644 0.84421 0.83009 0.81427 0.83540 0.90612 0.89418 0.90643 0.93318 0.78111 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.05 37.16 0.34 -1.81 16 2 C -0.11 -1.72 2.67 -90.50 -0.24 -1.96 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.94 5.43 -3.71 -0.02 1.92 16 5 N -0.59 -9.22 2.97 -173.91 -0.52 -9.74 16 6 C 0.55 8.74 7.28 -12.36 -0.09 8.65 16 7 O -0.55 -10.11 16.36 5.31 0.09 -10.02 16 8 C -0.12 -1.58 5.08 -104.97 -0.53 -2.11 16 9 C -0.05 -0.58 9.53 -39.53 -0.38 -0.96 16 10 C -0.12 -1.17 9.77 -39.63 -0.39 -1.56 16 11 C -0.01 -0.11 5.75 -106.74 -0.61 -0.72 16 12 C -0.16 -1.43 9.87 -39.40 -0.39 -1.82 16 13 C 0.08 0.78 11.07 -17.94 -0.20 0.58 16 14 N -0.49 -5.74 10.30 -13.12 -0.14 -5.88 16 15 C 0.16 1.76 11.05 -16.93 -0.19 1.58 16 16 C -0.12 -1.38 5.74 -106.87 -0.61 -1.99 16 17 C -0.04 -0.52 7.16 -38.75 -0.28 -0.80 16 18 C 0.10 1.57 4.66 -3.72 -0.02 1.56 16 19 C -0.15 -2.39 5.78 -26.61 -0.15 -2.55 16 20 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -15.90 3.64 -53.39 -0.19 -16.09 16 23 C -0.24 -6.07 9.93 -15.06 -0.15 -6.21 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 26 N -0.93 -26.32 13.06 55.49 0.72 -25.59 16 27 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.07 1.30 7.53 -51.93 -0.39 0.91 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 35 H 0.08 1.40 6.64 -51.93 -0.34 1.05 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.15 1.68 6.72 -52.49 -0.35 1.32 16 42 H 0.08 1.00 4.84 -51.93 -0.25 0.75 16 43 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.38 9.08 5.92 -40.82 -0.24 8.84 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -30.51 376.63 -10.10 -40.61 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.54 Total: 10.23 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -4.18 Total: -5.52 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.12 Total: -57.29 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.51 -10.10 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.568 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds