Wall clock time and date at job start Tue Mar 31 2020 22:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49752 * 2 1 4 4 C 1.53199 * 109.49597 * 120.09110 * 2 1 3 5 5 N 1.46925 * 108.77087 * 174.58735 * 4 2 1 6 6 C 1.34774 * 120.62584 * 126.42022 * 5 4 2 7 7 O 1.21564 * 120.00171 * 354.14303 * 6 5 4 8 8 C 1.47779 * 120.00113 * 174.15073 * 6 5 4 9 9 C 1.40647 * 119.70290 * 138.33612 * 8 6 5 10 10 C 1.35846 * 120.88010 * 180.02562 * 9 8 6 11 11 C 1.40397 * 119.84222 * 359.97241 * 10 9 8 12 12 C 1.40635 * 121.97289 * 179.97438 * 11 10 9 13 13 C 1.36231 * 118.72848 * 180.02562 * 12 11 10 14 14 N 1.32594 * 121.89836 * 0.02562 * 13 12 11 15 15 C 1.31244 * 122.74321 * 359.97438 * 14 13 12 16 16 C 1.40548 * 119.88614 * 0.02562 * 15 14 13 17 17 C 1.38565 * 119.69634 * 318.06456 * 8 6 5 18 18 C 1.46918 * 118.74123 * 306.38901 * 5 4 2 19 19 C 1.53190 * 108.77628 * 53.61293 * 18 5 4 20 20 C 1.53034 * 109.50037 * 239.93095 * 2 1 3 21 21 H 1.09004 * 109.46149 * 58.67533 * 20 2 1 22 22 N 1.46502 * 109.46243 * 298.70480 * 20 2 1 23 23 C 1.36938 * 120.00392 * 154.99838 * 22 20 2 24 24 H 1.07995 * 119.99751 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99930 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00200 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99778 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46950 * 180.02562 * 27 25 23 29 29 H 1.48504 * 109.46979 * 299.99948 * 27 25 23 30 30 H 1.48492 * 109.47446 * 59.99631 * 27 25 23 31 31 H 1.09003 * 109.46964 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47188 * 300.06740 * 1 2 3 33 33 H 1.09004 * 109.47059 * 60.06734 * 1 2 3 34 34 H 1.09002 * 109.58267 * 294.37608 * 4 2 1 35 35 H 1.08997 * 109.58212 * 54.80055 * 4 2 1 36 36 H 1.08000 * 119.56487 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.07745 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.64004 * 0.02562 * 12 11 10 39 39 H 1.07995 * 119.04649 * 179.97438 * 13 12 11 40 40 H 1.07994 * 120.05482 * 179.97438 * 15 14 13 41 41 H 1.07995 * 120.34879 * 0.02562 * 17 8 6 42 42 H 1.09004 * 109.58569 * 173.39976 * 18 5 4 43 43 H 1.09001 * 109.59063 * 293.82705 * 18 5 4 44 44 H 1.09000 * 109.50018 * 185.41134 * 19 18 5 45 45 H 1.09007 * 109.49782 * 65.31527 * 19 18 5 46 46 H 0.97010 * 119.99605 * 335.00024 * 22 20 2 47 47 H 0.97006 * 120.00016 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2495 5 7 3.5046 -0.8293 1.1694 6 6 4.2810 -0.3869 2.1783 7 8 3.7807 0.2004 3.1178 8 6 5.7405 -0.6154 2.1424 9 6 6.6166 0.4107 2.5395 10 6 7.9624 0.2267 2.5155 11 6 8.4920 -1.0020 2.0902 12 6 9.8773 -1.2409 2.0471 13 6 10.3190 -2.4577 1.6228 14 7 9.4818 -3.4165 1.2512 15 6 8.1782 -3.2653 1.2652 16 6 7.6190 -2.0467 1.6865 17 6 6.2334 -1.8408 1.7232 18 6 4.1052 -1.4266 -0.0309 19 6 3.5709 -0.6948 -1.2660 20 6 2.0408 -0.7228 -1.2484 21 1 1.6584 -0.2239 -2.1389 22 7 1.5784 -2.1128 -1.2312 23 6 1.4483 -2.8057 -2.4052 24 1 1.6869 -2.3276 -3.3437 25 6 1.0096 -4.1226 -2.3888 26 7 0.7192 -4.7054 -1.2450 27 14 0.8327 -5.0680 -3.9902 28 1 0.3509 -6.4429 -3.7026 29 1 -0.1439 -4.3754 -4.8687 30 1 2.1499 -5.1371 -4.6724 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.7637 -0.1583 2.1389 35 1 1.6052 -1.7218 1.2977 36 1 6.2142 1.3578 2.8671 37 1 8.6232 1.0237 2.8229 38 1 10.5775 -0.4744 2.3447 39 1 11.3817 -2.6466 1.5872 40 1 7.5364 -4.0757 0.9527 41 1 5.5568 -2.6272 1.4229 42 1 5.1896 -1.3245 0.0136 43 1 3.8375 -2.4818 -0.0872 44 1 3.9335 -1.1892 -2.1672 45 1 3.9159 0.3392 -1.2539 46 1 1.3644 -2.5423 -0.3882 47 1 0.4130 -5.6258 -1.2336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036245389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:14 Heat of formation + Delta-G solvation = 19.450017 kcal Electronic energy + Delta-G solvation = -29552.805104 eV Core-core repulsion = 25699.880749 eV Total energy + Delta-G solvation = -3852.924355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.11830 -41.16517 -39.27379 -37.97370 -35.95364 -34.69298 -33.85427 -32.99822 -32.30246 -30.97729 -30.81652 -27.71712 -26.85009 -25.60491 -25.13652 -24.63354 -23.43037 -22.97228 -21.53646 -19.94895 -19.26305 -19.02247 -18.37730 -17.84122 -17.33932 -16.78654 -16.54694 -16.14241 -15.95718 -15.88942 -15.59613 -15.26518 -15.13806 -14.92615 -14.82603 -14.54544 -14.33587 -14.15207 -14.10483 -13.57986 -13.28221 -12.98908 -12.87266 -12.84641 -12.81172 -12.64652 -12.48287 -12.32779 -12.15271 -11.96346 -11.92456 -11.57473 -11.25321 -11.16998 -11.03644 -10.79497 -10.48442 -10.19526 -9.66289 -9.08813 -8.90050 -7.86826 -5.12896 -0.80661 -0.29674 0.77098 1.45521 1.51772 1.52224 1.58070 1.86667 2.16058 2.61367 3.02147 3.27394 3.44985 3.47021 3.58236 3.68042 3.82099 3.83696 3.87920 3.96329 4.02465 4.08143 4.10077 4.30796 4.32416 4.38665 4.50879 4.61700 4.64735 4.65586 4.70423 4.78186 4.83119 4.85851 4.91501 4.95101 5.02218 5.13788 5.16052 5.22545 5.27914 5.29511 5.32703 5.47898 5.59127 5.60853 5.63163 5.71900 6.34116 6.34841 6.96733 6.99076 7.42902 8.18269 8.42567 9.35914 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003529 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.818393 B = 7932.447020 C = 9809.177787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.555 3.445 7 O -0.577 6.577 8 C -0.135 4.135 9 C -0.065 4.065 10 C -0.103 4.103 11 C -0.024 4.024 12 C -0.150 4.150 13 C 0.070 3.930 14 N -0.513 5.513 15 C 0.146 3.854 16 C -0.130 4.130 17 C -0.046 4.046 18 C 0.115 3.885 19 C -0.143 4.143 20 C 0.173 3.827 21 H 0.047 0.953 22 N -0.723 5.723 23 C -0.229 4.229 24 H 0.074 0.926 25 C -0.068 4.068 26 N -0.966 5.966 27 Si 0.961 3.039 28 H -0.302 1.302 29 H -0.284 1.284 30 H -0.280 1.280 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.140 0.860 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.176 0.824 41 H 0.142 0.858 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.498 11.523 6.506 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.103 0.897 4 C 0.001 3.999 5 N -0.322 5.322 6 C 0.345 3.655 7 O -0.458 6.458 8 C -0.138 4.138 9 C -0.085 4.085 10 C -0.120 4.120 11 C -0.029 4.029 12 C -0.169 4.169 13 C -0.073 4.073 14 N -0.221 5.221 15 C -0.025 4.025 16 C -0.132 4.132 17 C -0.066 4.066 18 C -0.007 4.007 19 C -0.184 4.184 20 C 0.065 3.935 21 H 0.065 0.935 22 N -0.365 5.365 23 C -0.361 4.361 24 H 0.092 0.908 25 C -0.261 4.261 26 N -0.617 5.617 27 Si 0.791 3.209 28 H -0.229 1.229 29 H -0.210 1.210 30 H -0.206 1.206 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.189 0.811 38 H 0.192 0.808 39 H 0.197 0.803 40 H 0.193 0.807 41 H 0.160 0.840 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.717 11.038 6.535 21.873 hybrid contribution -1.153 -0.492 -0.381 1.310 sum 16.563 10.547 6.154 20.578 Atomic orbital electron populations 1.21602 0.93931 1.01587 1.01811 1.21623 0.96682 0.99283 0.94195 0.89708 1.21567 0.78703 1.00529 0.99119 1.48061 1.06918 1.59191 1.18033 1.18675 0.87138 0.77895 0.81776 1.90732 1.75740 1.43650 1.35689 1.19848 0.92252 0.96634 1.05028 1.21011 0.93261 0.98397 0.95838 1.21177 0.94847 0.96653 0.99338 1.18614 0.94408 0.93904 0.95976 1.22271 0.94250 0.99720 1.00666 1.22777 1.00831 0.89183 0.94485 1.67512 1.04778 1.34436 1.15406 1.23553 0.91571 0.95079 0.92295 1.19044 0.93793 0.96643 1.03744 1.21614 0.94490 0.96421 0.94121 1.21941 0.98201 0.97330 0.83260 1.22415 0.98580 1.00051 0.97331 1.20416 0.92069 0.85282 0.95768 0.93484 1.42561 1.79112 1.09171 1.05619 1.19507 1.34981 0.93898 0.87673 0.90837 1.25324 1.03473 0.98348 0.98926 1.69783 1.53689 1.12862 1.25408 0.85403 0.77791 0.77452 0.80229 1.22883 1.21026 1.20621 0.94024 0.91644 0.92217 0.89609 0.92586 0.84223 0.81078 0.80790 0.80336 0.80693 0.84019 0.88366 0.92010 0.91397 0.91009 0.79205 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.05 71.98 0.65 -3.40 16 2 C -0.10 -3.05 2.67 -10.72 -0.03 -3.08 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.12 4.07 5.43 86.36 0.47 4.54 16 5 N -0.59 -18.48 2.97 -822.40 -2.44 -20.92 16 6 C 0.56 17.45 7.28 86.77 0.63 18.08 16 7 O -0.58 -21.40 16.36 -3.92 -0.06 -21.46 16 8 C -0.13 -3.43 5.08 -20.09 -0.10 -3.54 16 9 C -0.07 -1.36 9.53 22.30 0.21 -1.14 16 10 C -0.10 -1.63 9.77 22.24 0.22 -1.42 16 11 C -0.02 -0.44 5.75 -21.24 -0.12 -0.56 16 12 C -0.15 -2.08 9.87 22.39 0.22 -1.85 16 13 C 0.07 1.13 11.07 84.11 0.93 2.06 16 14 N -0.51 -11.23 10.30 -195.41 -2.01 -13.24 16 15 C 0.15 3.13 11.05 85.34 0.94 4.07 16 16 C -0.13 -2.82 5.74 -21.32 -0.12 -2.94 16 17 C -0.05 -1.08 7.16 22.81 0.16 -0.92 16 18 C 0.11 3.45 4.66 86.36 0.40 3.86 16 19 C -0.14 -4.43 5.78 30.67 0.18 -4.25 16 20 C 0.17 6.16 2.53 45.02 0.11 6.28 16 21 H 0.05 1.72 8.08 -2.38 -0.02 1.71 16 22 N -0.72 -32.61 3.64 -322.82 -1.18 -33.79 16 23 C -0.23 -11.68 9.93 84.03 0.83 -10.84 16 24 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 25 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 26 N -0.97 -56.29 13.06 21.65 0.28 -56.00 16 27 Si 0.96 44.49 29.55 68.60 2.03 46.52 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 29 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 30 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 31 H 0.04 1.53 7.53 -2.39 -0.02 1.52 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 2.84 7.00 -2.39 -0.02 2.82 16 35 H 0.06 2.10 6.64 -2.39 -0.02 2.09 16 36 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 39 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.14 3.36 6.72 -2.91 -0.02 3.34 16 42 H 0.10 2.53 4.84 -2.38 -0.01 2.52 16 43 H 0.06 2.21 7.72 -2.39 -0.02 2.19 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.37 18.41 5.92 -92.70 -0.55 17.87 16 47 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -66.71 376.63 3.12 -63.59 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.44 Total: 33.59 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 6.06 Total: 1.72 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -5.35 Total: -123.95 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.71 3.12 -63.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.041 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds