Wall clock time and date at job start Tue Mar 31 2020 22:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.49805 * 2 1 4 4 C 1.52758 * 109.59126 * 240.04182 * 2 1 3 5 5 N 1.46928 * 109.01002 * 185.53684 * 4 2 1 6 6 C 1.34777 * 120.63171 * 233.58587 * 5 4 2 7 7 O 1.21540 * 119.99934 * 5.56664 * 6 5 4 8 8 C 1.47884 * 119.99677 * 185.56118 * 6 5 4 9 9 C 1.40602 * 119.73219 * 41.82131 * 8 6 5 10 10 C 1.35850 * 120.95183 * 180.28433 * 9 8 6 11 11 C 1.40494 * 119.87701 * 359.71891 * 10 9 8 12 12 C 1.40487 * 121.83578 * 179.97438 * 11 10 9 13 13 N 1.31203 * 119.94518 * 180.02562 * 12 11 10 14 14 C 1.32558 * 122.79826 * 359.97438 * 13 12 11 15 15 C 1.36213 * 121.85096 * 0.02562 * 14 13 12 16 16 C 1.40760 * 118.67955 * 359.97438 * 15 14 13 17 17 C 1.38531 * 119.73034 * 221.54559 * 8 6 5 18 18 C 1.46924 * 118.73553 * 53.30948 * 5 4 2 19 19 C 1.53194 * 108.77650 * 306.64499 * 18 5 4 20 20 C 1.53040 * 109.31414 * 54.63800 * 19 18 5 21 21 H 1.09001 * 109.46426 * 58.65000 * 20 19 18 22 22 N 1.46501 * 109.46189 * 178.61597 * 20 19 18 23 23 C 1.36941 * 119.99616 * 274.99664 * 22 20 19 24 24 H 1.07998 * 119.99910 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99946 * 180.02562 * 23 22 20 26 26 N 1.31629 * 119.99769 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00185 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47064 * 89.99871 * 27 25 23 29 29 H 1.48497 * 109.46809 * 209.99679 * 27 25 23 30 30 H 1.48497 * 109.46875 * 329.99991 * 27 25 23 31 31 H 1.08996 * 109.47334 * 299.94089 * 1 2 3 32 32 H 1.09002 * 109.47127 * 59.93852 * 1 2 3 33 33 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.50998 * 65.65687 * 4 2 1 35 35 H 1.09003 * 109.43344 * 305.37773 * 4 2 1 36 36 H 1.07997 * 119.52462 * 359.97438 * 9 8 6 37 37 H 1.07999 * 120.06366 * 179.74668 * 10 9 8 38 38 H 1.08008 * 120.02738 * 0.02562 * 12 11 10 39 39 H 1.08007 * 119.07384 * 179.97438 * 14 13 12 40 40 H 1.08007 * 120.66441 * 179.97438 * 15 14 13 41 41 H 1.08004 * 120.35774 * 359.97438 * 17 8 6 42 42 H 1.09004 * 109.58589 * 66.43017 * 18 5 4 43 43 H 1.09000 * 109.59162 * 186.85789 * 18 5 4 44 44 H 1.09004 * 109.49766 * 174.58417 * 19 18 5 45 45 H 1.08992 * 109.49785 * 294.68386 * 19 18 5 46 46 H 0.96995 * 119.99874 * 94.99858 * 22 20 19 47 47 H 0.96993 * 119.99796 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0422 -0.7187 -1.2469 5 7 3.5053 -0.8284 -1.1689 6 6 4.2819 -0.3847 -2.1771 7 8 3.7817 0.2026 -3.1163 8 6 5.7427 -0.6123 -2.1404 9 6 6.2443 -1.8544 -1.7133 10 6 7.5816 -2.0884 -1.6644 11 6 8.4828 -1.0819 -2.0501 12 6 9.8733 -1.2792 -2.0154 13 7 10.6812 -0.3132 -2.3835 14 6 10.2459 0.8685 -2.7974 15 6 8.9173 1.1606 -2.8680 16 6 7.9876 0.1739 -2.4893 17 6 6.6055 0.3981 -2.5326 18 6 4.1059 -1.4255 0.0317 19 6 3.5707 -0.6939 1.2667 20 6 2.0407 -0.7227 1.2487 21 1 1.6970 -1.7570 1.2356 22 7 1.5258 -0.0526 2.4453 23 6 1.3943 -0.7492 3.6170 24 1 1.6699 -1.7926 3.6587 25 6 0.9059 -0.1144 4.7507 26 7 0.5696 1.1571 4.6997 27 14 0.7273 -1.0644 6.3492 28 1 1.9841 -0.9556 7.1327 29 1 -0.3977 -0.5000 7.1372 30 1 0.4536 -2.4926 6.0482 31 1 -0.3634 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7653 -0.1498 -2.1344 35 1 1.6031 -1.7151 -1.2972 36 1 5.5568 -2.6320 -1.4150 37 1 7.9514 -3.0465 -1.3302 38 1 10.2769 -2.2252 -1.6858 39 1 10.9648 1.6210 -3.0861 40 1 8.5838 2.1301 -3.2078 41 1 6.2168 1.3494 -2.8648 42 1 3.8385 -2.4808 0.0878 43 1 5.1901 -1.3230 -0.0124 44 1 3.9333 -1.1883 2.1680 45 1 3.9153 0.3401 1.2547 46 1 1.2779 0.8844 2.4077 47 1 0.2287 1.6008 5.4920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036245454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:19 Heat of formation + Delta-G solvation = 33.414493 kcal Electronic energy + Delta-G solvation = -28898.200591 eV Core-core repulsion = 25045.881781 eV Total energy + Delta-G solvation = -3852.318810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.29570 -40.16752 -37.95714 -37.16070 -34.73868 -33.36556 -33.03326 -31.63424 -31.41643 -30.00369 -29.36764 -26.86471 -25.43797 -24.46025 -24.07912 -22.78735 -22.61758 -21.70741 -20.41354 -19.40658 -18.44494 -17.55643 -17.12135 -16.94190 -16.50694 -15.87342 -15.25125 -15.14181 -15.00864 -14.53566 -14.35978 -14.07231 -13.98065 -13.86622 -13.78858 -13.37138 -13.15849 -13.03061 -12.73198 -12.57837 -12.46156 -12.11604 -11.73814 -11.66764 -11.41876 -11.22242 -10.98008 -10.84505 -10.71624 -10.55896 -10.44353 -10.23577 -10.06925 -9.81534 -9.77385 -9.66566 -9.33680 -8.94083 -8.59442 -8.42376 -7.00855 -5.81582 -3.10534 -0.07342 0.39264 1.52783 2.30698 2.80630 3.07884 3.39169 3.44511 3.46390 3.72783 4.05560 4.17795 4.20472 4.41764 4.46369 4.53744 4.68439 4.76904 4.87155 5.03055 5.16600 5.19924 5.24601 5.29728 5.33378 5.35662 5.47268 5.53884 5.58883 5.63895 5.68772 5.71908 5.88724 5.92624 5.94400 6.03017 6.09158 6.24960 6.25574 6.31696 6.37678 6.38896 6.47436 6.57374 6.75734 6.87428 6.99956 7.36847 7.61715 7.64262 8.05069 8.36563 9.48012 10.05156 10.39921 11.40860 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002647 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.946081 B =10576.441983 C =11662.311642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.556 3.444 7 O -0.540 6.540 8 C -0.099 4.099 9 C -0.093 4.093 10 C -0.091 4.091 11 C -0.100 4.100 12 C 0.144 3.856 13 N -0.486 5.486 14 C 0.072 3.928 15 C -0.145 4.145 16 C -0.031 4.031 17 C -0.054 4.054 18 C 0.098 3.902 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.892 -5.476 -15.926 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.328 5.328 6 C 0.344 3.656 7 O -0.418 6.418 8 C -0.104 4.104 9 C -0.112 4.112 10 C -0.111 4.111 11 C -0.102 4.102 12 C -0.028 4.028 13 N -0.194 5.194 14 C -0.071 4.071 15 C -0.165 4.165 16 C -0.036 4.036 17 C -0.073 4.073 18 C -0.024 4.024 19 C -0.193 4.193 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.493 -5.276 -16.282 23.086 hybrid contribution -1.061 0.035 1.098 1.527 sum 14.432 -5.241 -15.184 21.594 Atomic orbital electron populations 1.21656 0.93972 1.01800 1.01930 1.21666 0.96688 1.00139 0.94566 0.91235 1.21679 0.77895 1.01040 0.99634 1.48076 1.07286 1.59750 1.17734 1.18309 0.86077 0.78684 0.82567 1.90775 1.74825 1.41460 1.34733 1.20007 0.93579 0.95391 1.01398 1.21102 0.96094 0.96290 0.97691 1.20890 0.92500 0.98663 0.99022 1.19148 0.95657 0.94482 1.00945 1.23254 0.88186 0.97802 0.93513 1.67389 1.40595 1.01187 1.10185 1.22195 0.94189 0.93948 0.96739 1.21994 0.94059 0.99790 1.00641 1.18108 0.93680 0.93673 0.98120 1.21324 0.90967 0.99163 0.95828 1.22197 0.98203 0.97378 0.84663 1.22707 1.00428 1.00462 0.95738 1.20195 0.90276 0.95710 0.86454 0.93364 1.42407 1.76433 1.11427 1.05777 1.19202 1.35968 0.94084 0.87724 0.91236 1.24737 1.02016 0.96032 0.98071 1.69660 1.49911 1.09498 1.28915 0.86224 0.77291 0.78894 0.83971 1.21772 1.21812 1.20785 0.90690 0.93779 0.93015 0.89224 0.91300 0.84488 0.84188 0.81757 0.82839 0.84142 0.84098 0.91196 0.89767 0.90438 0.92192 0.78205 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.03 37.16 0.34 -1.81 16 2 C -0.11 -1.77 2.44 -90.72 -0.22 -1.99 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.67 5.70 -3.93 -0.02 1.64 16 5 N -0.60 -8.05 2.98 -174.13 -0.52 -8.57 16 6 C 0.56 7.91 7.29 -12.31 -0.09 7.82 16 7 O -0.54 -9.31 16.35 5.33 0.09 -9.22 16 8 C -0.10 -1.17 5.07 -104.95 -0.53 -1.70 16 9 C -0.09 -0.87 7.28 -39.55 -0.29 -1.16 16 10 C -0.09 -0.72 9.77 -39.59 -0.39 -1.11 16 11 C -0.10 -0.94 5.75 -106.78 -0.61 -1.55 16 12 C 0.14 1.24 11.04 -16.97 -0.19 1.05 16 13 N -0.49 -4.89 10.29 -13.15 -0.14 -5.02 16 14 C 0.07 0.63 11.07 -17.97 -0.20 0.44 16 15 C -0.15 -1.28 9.88 -39.36 -0.39 -1.67 16 16 C -0.03 -0.32 5.74 -106.83 -0.61 -0.93 16 17 C -0.05 -0.60 9.42 -38.78 -0.37 -0.97 16 18 C 0.10 1.21 4.91 -3.71 -0.02 1.19 16 19 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 20 C 0.18 3.35 2.20 -67.89 -0.15 3.20 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -16.88 4.41 -53.38 -0.24 -17.12 16 23 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 27 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 31 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.14 1.07 6.70 -52.49 -0.35 0.72 16 37 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.08 0.92 4.82 -51.93 -0.25 0.67 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.38 9.79 7.50 -40.82 -0.31 9.48 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -32.30 380.49 -10.20 -42.49 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.69 Total: 8.61 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -4.14 Total: -6.98 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.16 Total: -57.34 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.30 -10.20 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.909 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds