Wall clock time and date at job start Tue Mar 31 2020 22:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.49805 * 2 1 4 4 C 1.52758 * 109.59126 * 240.04182 * 2 1 3 5 5 N 1.46928 * 109.01002 * 185.53684 * 4 2 1 6 6 C 1.34777 * 120.63171 * 233.58587 * 5 4 2 7 7 O 1.21540 * 119.99934 * 5.56664 * 6 5 4 8 8 C 1.47884 * 119.99677 * 185.56118 * 6 5 4 9 9 C 1.40602 * 119.73219 * 41.82131 * 8 6 5 10 10 C 1.35850 * 120.95183 * 180.28433 * 9 8 6 11 11 C 1.40494 * 119.87701 * 359.71891 * 10 9 8 12 12 C 1.40487 * 121.83578 * 179.97438 * 11 10 9 13 13 N 1.31203 * 119.94518 * 180.02562 * 12 11 10 14 14 C 1.32558 * 122.79826 * 359.97438 * 13 12 11 15 15 C 1.36213 * 121.85096 * 0.02562 * 14 13 12 16 16 C 1.40760 * 118.67955 * 359.97438 * 15 14 13 17 17 C 1.38531 * 119.73034 * 221.54559 * 8 6 5 18 18 C 1.46924 * 118.73553 * 53.30948 * 5 4 2 19 19 C 1.53194 * 108.77650 * 306.64499 * 18 5 4 20 20 C 1.53040 * 109.31414 * 54.63800 * 19 18 5 21 21 H 1.09001 * 109.46426 * 58.65000 * 20 19 18 22 22 N 1.46501 * 109.46189 * 178.61597 * 20 19 18 23 23 C 1.36941 * 119.99616 * 274.99664 * 22 20 19 24 24 H 1.07998 * 119.99910 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99946 * 180.02562 * 23 22 20 26 26 N 1.31629 * 119.99769 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00185 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47064 * 89.99871 * 27 25 23 29 29 H 1.48497 * 109.46809 * 209.99679 * 27 25 23 30 30 H 1.48497 * 109.46875 * 329.99991 * 27 25 23 31 31 H 1.08996 * 109.47334 * 299.94089 * 1 2 3 32 32 H 1.09002 * 109.47127 * 59.93852 * 1 2 3 33 33 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.50998 * 65.65687 * 4 2 1 35 35 H 1.09003 * 109.43344 * 305.37773 * 4 2 1 36 36 H 1.07997 * 119.52462 * 359.97438 * 9 8 6 37 37 H 1.07999 * 120.06366 * 179.74668 * 10 9 8 38 38 H 1.08008 * 120.02738 * 0.02562 * 12 11 10 39 39 H 1.08007 * 119.07384 * 179.97438 * 14 13 12 40 40 H 1.08007 * 120.66441 * 179.97438 * 15 14 13 41 41 H 1.08004 * 120.35774 * 359.97438 * 17 8 6 42 42 H 1.09004 * 109.58589 * 66.43017 * 18 5 4 43 43 H 1.09000 * 109.59162 * 186.85789 * 18 5 4 44 44 H 1.09004 * 109.49766 * 174.58417 * 19 18 5 45 45 H 1.08992 * 109.49785 * 294.68386 * 19 18 5 46 46 H 0.96995 * 119.99874 * 94.99858 * 22 20 19 47 47 H 0.96993 * 119.99796 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0422 -0.7187 -1.2469 5 7 3.5053 -0.8284 -1.1689 6 6 4.2819 -0.3847 -2.1771 7 8 3.7817 0.2026 -3.1163 8 6 5.7427 -0.6123 -2.1404 9 6 6.2443 -1.8544 -1.7133 10 6 7.5816 -2.0884 -1.6644 11 6 8.4828 -1.0819 -2.0501 12 6 9.8733 -1.2792 -2.0154 13 7 10.6812 -0.3132 -2.3835 14 6 10.2459 0.8685 -2.7974 15 6 8.9173 1.1606 -2.8680 16 6 7.9876 0.1739 -2.4893 17 6 6.6055 0.3981 -2.5326 18 6 4.1059 -1.4255 0.0317 19 6 3.5707 -0.6939 1.2667 20 6 2.0407 -0.7227 1.2487 21 1 1.6970 -1.7570 1.2356 22 7 1.5258 -0.0526 2.4453 23 6 1.3943 -0.7492 3.6170 24 1 1.6699 -1.7926 3.6587 25 6 0.9059 -0.1144 4.7507 26 7 0.5696 1.1571 4.6997 27 14 0.7273 -1.0644 6.3492 28 1 1.9841 -0.9556 7.1327 29 1 -0.3977 -0.5000 7.1372 30 1 0.4536 -2.4926 6.0482 31 1 -0.3634 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7653 -0.1498 -2.1344 35 1 1.6031 -1.7151 -1.2972 36 1 5.5568 -2.6320 -1.4150 37 1 7.9514 -3.0465 -1.3302 38 1 10.2769 -2.2252 -1.6858 39 1 10.9648 1.6210 -3.0861 40 1 8.5838 2.1301 -3.2078 41 1 6.2168 1.3494 -2.8648 42 1 3.8385 -2.4808 0.0878 43 1 5.1901 -1.3230 -0.0124 44 1 3.9333 -1.1883 2.1680 45 1 3.9153 0.3401 1.2547 46 1 1.2779 0.8844 2.4077 47 1 0.2287 1.6008 5.4920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036245454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:18 Heat of formation + Delta-G solvation = 14.506540 kcal Electronic energy + Delta-G solvation = -28899.020502 eV Core-core repulsion = 25045.881781 eV Total energy + Delta-G solvation = -3853.138721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.09168 -41.16320 -39.18249 -38.01763 -36.23668 -34.56667 -34.01430 -33.12209 -32.31620 -31.04392 -30.66412 -27.98553 -26.89979 -25.55211 -24.95033 -24.11810 -23.33701 -23.05675 -21.56081 -20.63429 -19.30222 -19.04071 -18.31339 -17.75628 -17.49130 -16.82370 -16.74079 -16.20805 -15.88289 -15.73131 -15.53214 -15.25610 -15.17160 -14.91171 -14.76075 -14.57604 -14.27344 -14.06642 -13.91177 -13.55126 -13.50195 -13.25774 -13.08634 -12.85191 -12.83161 -12.68923 -12.48019 -12.14810 -12.10580 -12.06716 -11.84517 -11.66741 -11.23836 -11.17294 -11.14125 -10.84879 -10.50590 -10.12059 -9.73793 -9.11166 -8.95692 -7.90481 -5.18164 -0.78579 -0.32071 0.82428 1.41611 1.49447 1.50097 1.58331 1.80580 2.17358 2.58664 3.03604 3.25637 3.43246 3.49844 3.54466 3.74938 3.77907 3.79186 3.83140 3.97279 4.03058 4.06146 4.09459 4.26194 4.33437 4.37177 4.48092 4.59596 4.63854 4.67561 4.73780 4.76958 4.79256 4.81526 4.94392 4.96044 5.00682 5.04036 5.15102 5.22249 5.24209 5.31589 5.39952 5.49427 5.56345 5.60714 5.62833 5.72272 6.27738 6.31165 6.95909 6.97018 7.37279 8.13455 8.36291 9.33260 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002647 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.946081 B =10576.441983 C =11662.311642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.047 0.953 4 C 0.126 3.874 5 N -0.596 5.596 6 C 0.555 3.445 7 O -0.578 6.578 8 C -0.112 4.112 9 C -0.103 4.103 10 C -0.072 4.072 11 C -0.112 4.112 12 C 0.147 3.853 13 N -0.509 5.509 14 C 0.067 3.933 15 C -0.155 4.155 16 C -0.046 4.046 17 C -0.068 4.068 18 C 0.108 3.892 19 C -0.144 4.144 20 C 0.180 3.820 21 H 0.054 0.946 22 N -0.732 5.732 23 C -0.227 4.227 24 H 0.080 0.920 25 C -0.079 4.079 26 N -0.973 5.973 27 Si 0.968 3.032 28 H -0.290 1.290 29 H -0.302 1.302 30 H -0.266 1.266 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.199 0.801 39 H 0.175 0.825 40 H 0.155 0.845 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.369 0.631 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.753 -8.505 -16.453 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.066 0.934 4 C 0.003 3.997 5 N -0.327 5.327 6 C 0.344 3.656 7 O -0.459 6.459 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.091 4.091 11 C -0.115 4.115 12 C -0.024 4.024 13 N -0.217 5.217 14 C -0.075 4.075 15 C -0.175 4.175 16 C -0.051 4.051 17 C -0.087 4.087 18 C -0.014 4.014 19 C -0.185 4.185 20 C 0.071 3.929 21 H 0.072 0.928 22 N -0.371 5.371 23 C -0.359 4.359 24 H 0.098 0.902 25 C -0.271 4.271 26 N -0.624 5.624 27 Si 0.798 3.202 28 H -0.217 1.217 29 H -0.229 1.229 30 H -0.191 1.191 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.174 0.826 37 H 0.198 0.802 38 H 0.215 0.785 39 H 0.192 0.808 40 H 0.173 0.827 41 H 0.150 0.850 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.201 0.799 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.386 -8.355 -16.836 25.604 hybrid contribution -1.556 0.986 1.169 2.182 sum 15.830 -7.369 -15.668 23.460 Atomic orbital electron populations 1.21571 0.93789 1.02217 1.01161 1.21534 0.96809 0.98988 0.94782 0.93413 1.21586 0.78479 1.01812 0.97784 1.48121 1.07058 1.59544 1.17966 1.18725 0.87160 0.77677 0.81993 1.90749 1.75755 1.43122 1.36236 1.19949 0.91857 0.96909 1.02931 1.21273 0.97140 0.95548 0.98193 1.21303 0.91574 0.99564 0.96695 1.19442 0.96516 0.94471 1.01026 1.23811 0.87750 0.98623 0.92220 1.67455 1.41311 1.01903 1.11079 1.22570 0.94608 0.94230 0.96120 1.22200 0.94059 1.00365 1.00874 1.18307 0.93362 0.94848 0.98623 1.21331 0.91678 0.99100 0.96633 1.22241 0.99172 0.98035 0.81977 1.22504 0.98513 0.99777 0.97679 1.20442 0.91545 0.95554 0.85339 0.92759 1.42615 1.76822 1.10848 1.06832 1.19611 1.33458 0.94472 0.88399 0.90166 1.25507 1.03287 0.96920 1.01366 1.69828 1.52158 1.11206 1.29215 0.85214 0.76573 0.78300 0.80151 1.21746 1.22915 1.19120 0.94157 0.91809 0.91936 0.89805 0.88941 0.82580 0.80248 0.78477 0.80824 0.82746 0.84982 0.88194 0.87760 0.91121 0.94387 0.79934 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.03 71.98 0.65 -3.42 16 2 C -0.10 -3.21 2.44 -10.86 -0.03 -3.24 16 3 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.13 3.32 5.70 86.22 0.49 3.81 16 5 N -0.60 -15.11 2.98 -823.11 -2.45 -17.56 16 6 C 0.55 15.39 7.29 86.80 0.63 16.02 16 7 O -0.58 -20.10 16.35 -3.84 -0.06 -20.17 16 8 C -0.11 -2.50 5.07 -20.08 -0.10 -2.60 16 9 C -0.10 -1.59 7.28 22.29 0.16 -1.43 16 10 C -0.07 -0.86 9.77 22.27 0.22 -0.65 16 11 C -0.11 -1.81 5.75 -21.26 -0.12 -1.94 16 12 C 0.15 2.10 11.04 85.34 0.94 3.04 16 13 N -0.51 -9.20 10.29 -195.50 -2.01 -11.22 16 14 C 0.07 1.09 11.07 84.11 0.93 2.02 16 15 C -0.16 -2.62 9.88 22.41 0.22 -2.40 16 16 C -0.05 -0.91 5.74 -21.29 -0.12 -1.03 16 17 C -0.07 -1.52 9.42 22.79 0.21 -1.31 16 18 C 0.11 2.35 4.91 86.36 0.42 2.78 16 19 C -0.14 -4.48 5.66 30.67 0.17 -4.30 16 20 C 0.18 6.42 2.20 45.02 0.10 6.52 16 21 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 22 N -0.73 -34.84 4.41 -322.80 -1.42 -36.26 16 23 C -0.23 -11.90 9.93 84.03 0.83 -11.07 16 24 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 25 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 26 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 27 Si 0.97 44.93 29.55 68.60 2.03 46.95 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 29 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 30 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 31 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.37 7.00 -2.39 -0.02 2.35 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.16 1.76 6.70 -2.91 -0.02 1.74 16 37 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 38 H 0.20 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 42 H 0.10 1.68 8.12 -2.38 -0.02 1.66 16 43 H 0.10 1.94 4.82 -2.39 -0.01 1.93 16 44 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.37 19.59 7.50 -92.71 -0.70 18.89 16 47 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -72.42 380.49 2.74 -69.68 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.29 Total: 30.26 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 6.09 Total: -3.13 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.60 Total: -123.59 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.17 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.42 2.74 -69.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.184 kcal (2) G-P(sol) polarization free energy of solvation -72.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds