Wall clock time and date at job start Tue Mar 31 2020 22:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.49667 * 2 1 4 4 C 1.53198 * 109.49530 * 239.90645 * 2 1 3 5 5 N 1.46926 * 108.77722 * 185.41183 * 4 2 1 6 6 C 1.34775 * 120.63520 * 233.63135 * 5 4 2 7 7 O 1.21550 * 119.99507 * 356.22518 * 6 5 4 8 8 C 1.47880 * 120.00511 * 176.22642 * 6 5 4 9 9 C 1.40594 * 119.72959 * 231.28685 * 8 6 5 10 10 C 1.35852 * 120.95066 * 179.97438 * 9 8 6 11 11 C 1.40492 * 119.88105 * 359.97438 * 10 9 8 12 12 C 1.40486 * 121.83418 * 179.97438 * 11 10 9 13 13 N 1.31212 * 119.93676 * 180.02562 * 12 11 10 14 14 C 1.32552 * 122.80357 * 359.97438 * 13 12 11 15 15 C 1.36223 * 121.84655 * 359.97438 * 14 13 12 16 16 C 1.40759 * 118.67922 * 359.97438 * 15 14 13 17 17 C 1.38532 * 119.72918 * 51.00598 * 8 6 5 18 18 C 1.47002 * 118.75183 * 53.60533 * 5 4 2 19 19 C 1.53191 * 108.73780 * 306.40865 * 18 5 4 20 20 C 1.53031 * 109.50081 * 120.06974 * 2 1 3 21 21 H 1.09006 * 109.45702 * 301.33311 * 20 2 1 22 22 N 1.46500 * 109.46231 * 61.29126 * 20 2 1 23 23 C 1.36935 * 119.99889 * 205.07110 * 22 20 2 24 24 H 1.08001 * 120.00432 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99630 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00386 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99785 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47409 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.46965 * 120.00008 * 27 25 23 30 30 H 1.48500 * 109.46958 * 239.99895 * 27 25 23 31 31 H 1.09005 * 109.46876 * 299.93725 * 1 2 3 32 32 H 1.09003 * 109.47309 * 59.92731 * 1 2 3 33 33 H 1.08997 * 109.47499 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.58371 * 305.19803 * 4 2 1 35 35 H 1.08999 * 109.58534 * 65.62710 * 4 2 1 36 36 H 1.07996 * 119.52499 * 359.97423 * 9 8 6 37 37 H 1.08001 * 120.05916 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.03344 * 359.97438 * 12 11 10 39 39 H 1.08005 * 119.07974 * 179.97438 * 14 13 12 40 40 H 1.08004 * 120.65838 * 179.97438 * 15 14 13 41 41 H 1.08001 * 120.36572 * 0.02562 * 17 8 6 42 42 H 1.08998 * 109.62696 * 186.62228 * 18 5 4 43 43 H 1.08998 * 109.57672 * 66.17277 * 18 5 4 44 44 H 1.08989 * 109.50268 * 294.65453 * 19 18 5 45 45 H 1.09002 * 109.49728 * 174.58773 * 19 18 5 46 46 H 0.96992 * 119.99979 * 25.07016 * 22 20 2 47 47 H 0.96993 * 120.00367 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0412 -0.7241 -1.2495 5 7 3.5045 -0.8294 -1.1696 6 6 4.2811 -0.3862 -2.1780 7 8 3.7709 0.0433 -3.1942 8 6 5.7537 -0.4222 -2.0482 9 6 6.5053 0.7368 -2.3096 10 6 7.8592 0.7317 -2.1975 11 6 8.5254 -0.4445 -1.8148 12 6 9.9234 -0.4960 -1.6867 13 7 10.5072 -1.6148 -1.3273 14 6 9.8327 -2.7268 -1.0716 15 6 8.4749 -2.7816 -1.1656 16 6 7.7766 -1.6199 -1.5452 17 6 6.3810 -1.5962 -1.6642 18 6 4.1059 -1.4269 0.0314 19 6 3.5709 -0.6947 1.2660 20 6 2.0408 -0.7228 1.2484 21 1 1.6582 -0.2239 2.1389 22 7 1.5783 -2.1128 1.2312 23 6 1.4468 -2.8051 2.4053 24 1 1.6837 -2.3264 3.3440 25 6 1.0091 -4.1223 2.3890 26 7 0.7199 -4.7056 1.2451 27 14 0.8304 -5.0671 3.9906 28 1 1.2161 -4.1924 5.1269 29 1 -0.5805 -5.4999 4.1551 30 1 1.7142 -6.2601 3.9627 31 1 -0.3633 0.5129 0.8906 32 1 -0.3634 0.5150 -0.8893 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6052 -1.7219 -1.2976 35 1 1.7637 -0.1584 -2.1389 36 1 5.9990 1.6443 -2.6038 37 1 8.4223 1.6303 -2.4023 38 1 10.5172 0.3841 -1.8847 39 1 10.3749 -3.6144 -0.7804 40 1 7.9446 -3.6982 -0.9532 41 1 5.8005 -2.4838 -1.4600 42 1 5.1902 -1.3248 -0.0126 43 1 3.8381 -2.4820 0.0876 44 1 3.9159 0.3391 1.2538 45 1 3.9334 -1.1886 2.1675 46 1 1.3652 -2.5426 0.3883 47 1 0.4137 -5.6259 1.2337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036245456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:23 Heat of formation + Delta-G solvation = 35.337154 kcal Electronic energy + Delta-G solvation = -29525.792316 eV Core-core repulsion = 25673.556879 eV Total energy + Delta-G solvation = -3852.235437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.19872 -40.04363 -38.00400 -37.01659 -34.43404 -33.34264 -32.86589 -31.55103 -31.36003 -29.93121 -29.23536 -26.58960 -25.56641 -24.39500 -23.77994 -23.50404 -22.55692 -21.68770 -20.37829 -18.58781 -18.02596 -17.47489 -17.33692 -17.10437 -16.19165 -15.82854 -15.15458 -15.08654 -14.69172 -14.48072 -14.36980 -14.03393 -13.99170 -13.90591 -13.69190 -13.35003 -13.02927 -12.79180 -12.71586 -12.54969 -12.36832 -12.17387 -11.59707 -11.43875 -11.34456 -11.23420 -10.96820 -10.84189 -10.61811 -10.55192 -10.37282 -10.20548 -9.92336 -9.90021 -9.66975 -9.60428 -9.25120 -8.98876 -8.35080 -8.28345 -7.03339 -5.84500 -3.13111 0.01828 0.52877 1.61887 2.45965 2.91650 3.20157 3.37328 3.44032 3.45756 3.81521 4.14250 4.26891 4.33660 4.52464 4.52725 4.57824 4.82163 4.86237 5.02759 5.13175 5.25294 5.30199 5.32286 5.40410 5.45299 5.47855 5.53789 5.66112 5.68830 5.75805 5.81016 5.85713 5.98699 6.00716 6.03488 6.08211 6.17377 6.26670 6.34096 6.35265 6.44230 6.47412 6.56851 6.62696 6.70197 6.86668 6.93729 7.56704 7.64365 7.70972 8.20834 8.33905 9.45838 10.01915 10.37099 11.37866 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003429 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.758303 B = 8163.004013 C = 9894.261744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.552 3.448 7 O -0.543 6.543 8 C -0.092 4.092 9 C -0.077 4.077 10 C -0.091 4.091 11 C -0.102 4.102 12 C 0.142 3.858 13 N -0.486 5.486 14 C 0.071 3.929 15 C -0.144 4.144 16 C -0.029 4.029 17 C -0.075 4.075 18 C 0.103 3.897 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.719 5.719 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.269 10.024 -5.856 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.340 3.660 7 O -0.422 6.422 8 C -0.096 4.096 9 C -0.096 4.096 10 C -0.111 4.111 11 C -0.104 4.104 12 C -0.030 4.030 13 N -0.194 5.194 14 C -0.072 4.072 15 C -0.163 4.163 16 C -0.034 4.034 17 C -0.093 4.093 18 C -0.019 4.019 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.854 9.978 -6.071 18.896 hybrid contribution -1.122 -0.874 0.694 1.582 sum 13.733 9.104 -5.377 17.332 Atomic orbital electron populations 1.21667 0.94094 1.03250 1.00505 1.21709 0.96600 0.98838 0.95671 0.91592 1.21710 0.77997 1.01841 0.98744 1.48104 1.07250 1.58831 1.17933 1.18314 0.86217 0.78038 0.83456 1.90771 1.74780 1.47722 1.28934 1.20035 0.93840 0.94983 1.00751 1.20811 0.93725 0.97507 0.97533 1.20862 0.94192 0.97086 0.98975 1.19127 0.95361 0.94394 1.01520 1.23215 0.90453 0.96071 0.93216 1.67379 1.41623 0.99445 1.10961 1.22187 0.91629 0.96067 0.97283 1.22034 0.95856 0.98322 1.00126 1.18086 0.93433 0.93582 0.98339 1.21551 0.93075 0.98175 0.96535 1.22075 0.97157 0.98990 0.83679 1.22524 1.00474 0.98665 0.97398 1.20218 0.90731 0.87388 0.94864 0.93058 1.42482 1.78983 1.07706 1.06949 1.19262 1.37204 0.93855 0.86569 0.91195 1.24697 1.02220 0.97176 0.96591 1.69650 1.51721 1.13014 1.23624 0.86179 0.77326 0.79970 0.83062 1.20627 1.21944 1.21973 0.92746 0.93714 0.90991 0.90358 0.89657 0.84826 0.84357 0.81908 0.82842 0.83986 0.83909 0.90502 0.89430 0.93295 0.90696 0.78114 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.05 37.15 0.34 -1.80 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 3 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 4 C 0.12 1.95 5.41 -3.71 -0.02 1.93 16 5 N -0.59 -9.28 2.97 -173.81 -0.52 -9.79 16 6 C 0.55 8.76 7.21 -12.31 -0.09 8.67 16 7 O -0.54 -10.15 16.47 5.32 0.09 -10.06 16 8 C -0.09 -1.21 5.00 -104.95 -0.53 -1.73 16 9 C -0.08 -0.86 9.62 -39.55 -0.38 -1.24 16 10 C -0.09 -0.83 9.77 -39.59 -0.39 -1.22 16 11 C -0.10 -1.05 5.75 -106.78 -0.61 -1.67 16 12 C 0.14 1.34 11.04 -16.97 -0.19 1.15 16 13 N -0.49 -5.32 10.29 -13.15 -0.14 -5.45 16 14 C 0.07 0.71 11.07 -17.97 -0.20 0.51 16 15 C -0.14 -1.45 9.88 -39.35 -0.39 -1.84 16 16 C -0.03 -0.33 5.74 -106.83 -0.61 -0.95 16 17 C -0.07 -0.91 7.13 -38.78 -0.28 -1.18 16 18 C 0.10 1.58 5.11 -3.67 -0.02 1.56 16 19 C -0.15 -2.39 5.78 -26.61 -0.15 -2.55 16 20 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -15.98 3.64 -53.39 -0.19 -16.17 16 23 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 27 Si 0.90 21.37 29.55 -169.99 -5.02 16.34 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 34 H 0.08 1.42 6.64 -51.93 -0.34 1.07 16 35 H 0.09 1.40 7.02 -51.93 -0.36 1.03 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 41 H 0.14 1.68 7.08 -52.49 -0.37 1.31 16 42 H 0.08 1.03 4.58 -51.93 -0.24 0.80 16 43 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.38 9.15 5.93 -40.82 -0.24 8.91 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -30.79 377.24 -10.10 -40.88 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.55 Total: 10.13 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.18 Total: -5.84 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.12 Total: -57.14 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.79 -10.10 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.220 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds