Wall clock time and date at job start Tue Mar 31 2020 22:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.49667 * 2 1 4 4 C 1.53198 * 109.49530 * 239.90645 * 2 1 3 5 5 N 1.46926 * 108.77722 * 185.41183 * 4 2 1 6 6 C 1.34775 * 120.63520 * 233.63135 * 5 4 2 7 7 O 1.21550 * 119.99507 * 356.22518 * 6 5 4 8 8 C 1.47880 * 120.00511 * 176.22642 * 6 5 4 9 9 C 1.40594 * 119.72959 * 231.28685 * 8 6 5 10 10 C 1.35852 * 120.95066 * 179.97438 * 9 8 6 11 11 C 1.40492 * 119.88105 * 359.97438 * 10 9 8 12 12 C 1.40486 * 121.83418 * 179.97438 * 11 10 9 13 13 N 1.31212 * 119.93676 * 180.02562 * 12 11 10 14 14 C 1.32552 * 122.80357 * 359.97438 * 13 12 11 15 15 C 1.36223 * 121.84655 * 359.97438 * 14 13 12 16 16 C 1.40759 * 118.67922 * 359.97438 * 15 14 13 17 17 C 1.38532 * 119.72918 * 51.00598 * 8 6 5 18 18 C 1.47002 * 118.75183 * 53.60533 * 5 4 2 19 19 C 1.53191 * 108.73780 * 306.40865 * 18 5 4 20 20 C 1.53031 * 109.50081 * 120.06974 * 2 1 3 21 21 H 1.09006 * 109.45702 * 301.33311 * 20 2 1 22 22 N 1.46500 * 109.46231 * 61.29126 * 20 2 1 23 23 C 1.36935 * 119.99889 * 205.07110 * 22 20 2 24 24 H 1.08001 * 120.00432 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99630 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00386 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99785 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47409 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.46965 * 120.00008 * 27 25 23 30 30 H 1.48500 * 109.46958 * 239.99895 * 27 25 23 31 31 H 1.09005 * 109.46876 * 299.93725 * 1 2 3 32 32 H 1.09003 * 109.47309 * 59.92731 * 1 2 3 33 33 H 1.08997 * 109.47499 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.58371 * 305.19803 * 4 2 1 35 35 H 1.08999 * 109.58534 * 65.62710 * 4 2 1 36 36 H 1.07996 * 119.52499 * 359.97423 * 9 8 6 37 37 H 1.08001 * 120.05916 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.03344 * 359.97438 * 12 11 10 39 39 H 1.08005 * 119.07974 * 179.97438 * 14 13 12 40 40 H 1.08004 * 120.65838 * 179.97438 * 15 14 13 41 41 H 1.08001 * 120.36572 * 0.02562 * 17 8 6 42 42 H 1.08998 * 109.62696 * 186.62228 * 18 5 4 43 43 H 1.08998 * 109.57672 * 66.17277 * 18 5 4 44 44 H 1.08989 * 109.50268 * 294.65453 * 19 18 5 45 45 H 1.09002 * 109.49728 * 174.58773 * 19 18 5 46 46 H 0.96992 * 119.99979 * 25.07016 * 22 20 2 47 47 H 0.96993 * 120.00367 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0412 -0.7241 -1.2495 5 7 3.5045 -0.8294 -1.1696 6 6 4.2811 -0.3862 -2.1780 7 8 3.7709 0.0433 -3.1942 8 6 5.7537 -0.4222 -2.0482 9 6 6.5053 0.7368 -2.3096 10 6 7.8592 0.7317 -2.1975 11 6 8.5254 -0.4445 -1.8148 12 6 9.9234 -0.4960 -1.6867 13 7 10.5072 -1.6148 -1.3273 14 6 9.8327 -2.7268 -1.0716 15 6 8.4749 -2.7816 -1.1656 16 6 7.7766 -1.6199 -1.5452 17 6 6.3810 -1.5962 -1.6642 18 6 4.1059 -1.4269 0.0314 19 6 3.5709 -0.6947 1.2660 20 6 2.0408 -0.7228 1.2484 21 1 1.6582 -0.2239 2.1389 22 7 1.5783 -2.1128 1.2312 23 6 1.4468 -2.8051 2.4053 24 1 1.6837 -2.3264 3.3440 25 6 1.0091 -4.1223 2.3890 26 7 0.7199 -4.7056 1.2451 27 14 0.8304 -5.0671 3.9906 28 1 1.2161 -4.1924 5.1269 29 1 -0.5805 -5.4999 4.1551 30 1 1.7142 -6.2601 3.9627 31 1 -0.3633 0.5129 0.8906 32 1 -0.3634 0.5150 -0.8893 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6052 -1.7219 -1.2976 35 1 1.7637 -0.1584 -2.1389 36 1 5.9990 1.6443 -2.6038 37 1 8.4223 1.6303 -2.4023 38 1 10.5172 0.3841 -1.8847 39 1 10.3749 -3.6144 -0.7804 40 1 7.9446 -3.6982 -0.9532 41 1 5.8005 -2.4838 -1.4600 42 1 5.1902 -1.3248 -0.0126 43 1 3.8381 -2.4820 0.0876 44 1 3.9159 0.3391 1.2538 45 1 3.9334 -1.1886 2.1675 46 1 1.3652 -2.5426 0.3883 47 1 0.4137 -5.6259 1.2337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036245456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:21 Heat of formation + Delta-G solvation = 18.496184 kcal Electronic energy + Delta-G solvation = -29526.522596 eV Core-core repulsion = 25673.556879 eV Total energy + Delta-G solvation = -3852.965717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.11724 -41.17976 -39.29791 -37.98686 -35.95230 -34.63583 -33.95847 -33.04751 -32.32349 -30.95038 -30.72483 -27.82219 -26.92823 -25.63800 -25.09040 -24.62267 -23.42513 -22.99656 -21.51779 -19.93860 -19.28143 -18.94662 -18.44322 -18.03110 -17.29246 -16.88256 -16.61357 -16.15800 -15.97453 -15.87144 -15.58711 -15.23716 -15.13946 -14.90932 -14.79797 -14.59091 -14.32414 -14.11512 -13.76718 -13.62241 -13.49769 -13.32053 -12.99259 -12.89504 -12.83450 -12.65934 -12.43831 -12.15712 -12.06110 -11.97507 -11.94453 -11.60038 -11.24203 -11.20794 -11.10149 -10.85555 -10.49913 -10.14111 -9.68981 -9.09851 -8.92523 -7.89214 -5.15391 -0.79074 -0.29632 0.81984 1.40360 1.48324 1.50379 1.58362 1.81405 2.11432 2.59305 3.02742 3.23201 3.44992 3.49160 3.54099 3.75045 3.78007 3.83426 3.86180 3.97659 4.02703 4.06789 4.08139 4.28759 4.31858 4.36359 4.48991 4.57303 4.59809 4.64352 4.68595 4.73564 4.81957 4.92468 4.94213 5.00996 5.04679 5.12219 5.16642 5.20952 5.23094 5.27383 5.29548 5.46070 5.57824 5.60602 5.61746 5.72167 6.30083 6.32717 6.94530 6.97421 7.40533 8.16101 8.39883 9.34100 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003429 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.758303 B = 8163.004013 C = 9894.261744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.123 3.877 5 N -0.590 5.590 6 C 0.553 3.447 7 O -0.575 6.575 8 C -0.104 4.104 9 C -0.094 4.094 10 C -0.067 4.067 11 C -0.113 4.113 12 C 0.150 3.850 13 N -0.508 5.508 14 C 0.069 3.931 15 C -0.156 4.156 16 C -0.042 4.042 17 C -0.083 4.083 18 C 0.114 3.886 19 C -0.142 4.142 20 C 0.173 3.827 21 H 0.049 0.951 22 N -0.724 5.724 23 C -0.225 4.225 24 H 0.075 0.925 25 C -0.071 4.071 26 N -0.968 5.968 27 Si 0.961 3.039 28 H -0.267 1.267 29 H -0.301 1.301 30 H -0.298 1.298 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.180 0.820 38 H 0.200 0.800 39 H 0.174 0.826 40 H 0.152 0.848 41 H 0.136 0.864 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.673 12.252 -5.376 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 H 0.106 0.894 4 C 0.001 3.999 5 N -0.320 5.320 6 C 0.343 3.657 7 O -0.456 6.456 8 C -0.109 4.109 9 C -0.112 4.112 10 C -0.087 4.087 11 C -0.115 4.115 12 C -0.022 4.022 13 N -0.216 5.216 14 C -0.073 4.073 15 C -0.176 4.176 16 C -0.047 4.047 17 C -0.102 4.102 18 C -0.008 4.008 19 C -0.183 4.183 20 C 0.064 3.936 21 H 0.067 0.933 22 N -0.366 5.366 23 C -0.358 4.358 24 H 0.093 0.907 25 C -0.263 4.263 26 N -0.619 5.619 27 Si 0.792 3.208 28 H -0.192 1.192 29 H -0.228 1.228 30 H -0.226 1.226 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.197 0.803 38 H 0.216 0.784 39 H 0.191 0.809 40 H 0.170 0.830 41 H 0.154 0.846 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.284 12.246 -5.559 21.899 hybrid contribution -1.770 -1.490 0.507 2.368 sum 15.514 10.756 -5.052 19.542 Atomic orbital electron populations 1.21602 0.93879 1.01561 1.01902 1.21631 0.96713 0.99360 0.94036 0.89406 1.21575 0.78652 1.00534 0.99177 1.48115 1.06960 1.58789 1.18172 1.18756 0.87436 0.76936 0.82599 1.90743 1.75713 1.49211 1.29972 1.19929 0.92032 0.96394 1.02504 1.20945 0.94596 0.97035 0.98636 1.21250 0.93424 0.97901 0.96079 1.19405 0.96018 0.94446 1.01625 1.23803 0.90259 0.96716 0.91415 1.67463 1.42128 1.00140 1.11850 1.22549 0.91678 0.96682 0.96437 1.22192 0.96169 0.98575 1.00639 1.18265 0.93107 0.94719 0.98632 1.21478 0.93686 0.97707 0.97304 1.21939 0.98405 0.97118 0.83374 1.22404 0.98564 1.00124 0.97182 1.20434 0.92056 0.85234 0.95863 0.93305 1.42591 1.79075 1.09271 1.05619 1.19595 1.34661 0.93829 0.87668 0.90699 1.25349 1.03573 0.98397 0.98983 1.69798 1.53900 1.12823 1.25405 0.85246 0.76394 0.78640 0.80525 1.19164 1.22836 1.22601 0.92082 0.91580 0.94140 0.92855 0.89541 0.84083 0.80295 0.78354 0.80918 0.83015 0.84633 0.88275 0.92400 0.90766 0.91488 0.79285 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.05 71.98 0.65 -3.37 16 2 C -0.10 -3.01 2.67 -10.72 -0.03 -3.04 16 3 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 4 C 0.12 4.09 5.41 86.36 0.47 4.56 16 5 N -0.59 -18.62 2.97 -822.08 -2.44 -21.06 16 6 C 0.55 17.50 7.21 86.80 0.63 18.12 16 7 O -0.58 -21.59 16.47 -3.87 -0.06 -21.65 16 8 C -0.10 -2.66 5.00 -20.08 -0.10 -2.76 16 9 C -0.09 -1.87 9.62 22.29 0.21 -1.66 16 10 C -0.07 -0.99 9.77 22.27 0.22 -0.77 16 11 C -0.11 -2.02 5.75 -21.26 -0.12 -2.14 16 12 C 0.15 2.30 11.04 85.33 0.94 3.25 16 13 N -0.51 -9.81 10.29 -195.50 -2.01 -11.82 16 14 C 0.07 1.24 11.07 84.11 0.93 2.17 16 15 C -0.16 -2.99 9.88 22.42 0.22 -2.77 16 16 C -0.04 -0.90 5.74 -21.30 -0.12 -1.02 16 17 C -0.08 -1.98 7.13 22.79 0.16 -1.82 16 18 C 0.11 3.48 5.11 86.35 0.44 3.92 16 19 C -0.14 -4.39 5.78 30.67 0.18 -4.21 16 20 C 0.17 6.12 2.53 45.02 0.11 6.24 16 21 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 22 N -0.72 -32.82 3.64 -322.81 -1.18 -34.00 16 23 C -0.23 -11.54 9.93 84.03 0.83 -10.71 16 24 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 25 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 26 N -0.97 -56.78 13.06 21.65 0.28 -56.49 16 27 Si 0.96 44.58 29.55 68.60 2.03 46.61 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 30 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 34 H 0.05 2.04 6.64 -2.39 -0.02 2.03 16 35 H 0.09 2.86 7.02 -2.39 -0.02 2.84 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.14 3.30 7.08 -2.91 -0.02 3.28 16 42 H 0.10 2.62 4.58 -2.39 -0.01 2.60 16 43 H 0.06 2.14 7.74 -2.39 -0.02 2.12 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.37 18.57 5.93 -92.71 -0.55 18.02 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -67.71 377.24 3.15 -64.56 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.44 Total: 33.25 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.09 Total: 0.61 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -5.35 Total: -123.37 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.06 Total: -21.65 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.71 3.15 -64.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.055 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds