Wall clock time and date at job start Tue Mar 31 2020 22:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49664 * 2 1 4 4 C 1.53197 * 109.49806 * 120.05709 * 2 1 3 5 5 N 1.46919 * 108.77414 * 174.58728 * 4 2 1 6 6 C 1.34786 * 120.62900 * 126.11596 * 5 4 2 7 7 O 1.21544 * 119.99935 * 354.53077 * 6 5 4 8 8 C 1.47886 * 119.99889 * 174.52143 * 6 5 4 9 9 C 1.40591 * 119.73243 * 324.55233 * 8 6 5 10 10 C 1.35855 * 120.95108 * 179.74403 * 9 8 6 11 11 C 1.40490 * 119.87865 * 0.52716 * 10 9 8 12 12 C 1.40480 * 121.83781 * 179.73749 * 11 10 9 13 13 N 1.31203 * 119.94284 * 180.02562 * 12 11 10 14 14 C 1.32565 * 122.80286 * 359.97438 * 13 12 11 15 15 C 1.36211 * 121.84572 * 359.97438 * 14 13 12 16 16 C 1.40763 * 118.67906 * 0.02562 * 15 14 13 17 17 C 1.38532 * 119.72605 * 144.82190 * 8 6 5 18 18 C 1.46927 * 118.74338 * 306.39476 * 5 4 2 19 19 C 1.53194 * 108.77234 * 53.60703 * 18 5 4 20 20 C 1.53032 * 109.49964 * 239.89713 * 2 1 3 21 21 H 1.09002 * 109.46037 * 298.69016 * 20 2 1 22 22 N 1.46499 * 109.45990 * 58.66335 * 20 2 1 23 23 C 1.36943 * 120.00149 * 205.00215 * 22 20 2 24 24 H 1.08001 * 119.99847 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00046 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00090 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99836 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47023 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47114 * 120.00204 * 27 25 23 30 30 H 1.48495 * 109.47074 * 240.00128 * 27 25 23 31 31 H 1.08997 * 109.47024 * 299.93957 * 1 2 3 32 32 H 1.08996 * 109.46987 * 59.94425 * 1 2 3 33 33 H 1.09001 * 109.46513 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.58545 * 54.80213 * 4 2 1 35 35 H 1.09000 * 109.70222 * 294.44586 * 4 2 1 36 36 H 1.07999 * 119.52305 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.05693 * 180.28406 * 10 9 8 38 38 H 1.08000 * 120.02906 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.07444 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.66092 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.36643 * 359.96331 * 17 8 6 42 42 H 1.09003 * 109.58676 * 173.39494 * 18 5 4 43 43 H 1.09001 * 109.58597 * 293.82231 * 18 5 4 44 44 H 1.09005 * 109.49510 * 185.41898 * 19 18 5 45 45 H 1.08994 * 109.52360 * 65.33869 * 19 18 5 46 46 H 0.97001 * 120.00224 * 24.99747 * 22 20 2 47 47 H 0.96992 * 120.00139 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7233 1.2499 5 7 3.5046 -0.8286 1.1699 6 6 4.2814 -0.3800 2.1759 7 8 3.7805 0.2064 3.1154 8 6 5.7430 -0.6014 2.1367 9 6 6.2537 -1.7896 1.5854 10 6 7.5922 -2.0164 1.5321 11 6 8.4850 -1.0596 2.0430 12 6 9.8760 -1.2540 2.0141 13 7 10.6759 -0.3357 2.5023 14 6 10.2318 0.7943 3.0345 15 6 8.9020 1.0794 3.1096 16 6 7.9806 0.1419 2.6061 17 6 6.5976 0.3613 2.6487 18 6 4.1054 -1.4266 -0.0302 19 6 3.5709 -0.6953 -1.2657 20 6 2.0409 -0.7235 -1.2480 21 1 1.6970 -1.7578 -1.2344 22 7 1.5266 -0.0538 -2.4452 23 6 1.3965 -0.7506 -3.6169 24 1 1.6734 -1.7937 -3.6585 25 6 0.9087 -0.1161 -4.7512 26 7 0.5708 1.1549 -4.7004 27 14 0.7319 -1.0664 -6.3497 28 1 1.1772 -2.4681 -6.1441 29 1 -0.6902 -1.0559 -6.7771 30 1 1.5688 -0.4305 -7.3987 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5147 -0.8895 33 1 -0.3632 -1.0277 -0.0005 34 1 1.6053 -1.7211 1.2987 35 1 1.7637 -0.1592 2.1403 36 1 5.5723 -2.5312 1.1953 37 1 7.9689 -2.9323 1.1012 38 1 10.2866 -2.1585 1.5903 39 1 10.9444 1.5089 3.4192 40 1 8.5613 2.0064 3.5468 41 1 6.2021 1.2714 3.0750 42 1 5.1897 -1.3244 0.0144 43 1 3.8377 -2.4817 -0.0858 44 1 3.9335 -1.1904 -2.1666 45 1 3.9159 0.3385 -1.2547 46 1 1.2782 0.8831 -2.4079 47 1 0.2296 1.5981 -5.4928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036245459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:26 Heat of formation + Delta-G solvation = 38.164149 kcal Electronic energy + Delta-G solvation = -28900.966156 eV Core-core repulsion = 25048.853306 eV Total energy + Delta-G solvation = -3852.112850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31563 -40.17692 -37.93814 -37.18040 -34.76771 -33.37112 -33.03414 -31.65075 -31.38839 -30.01145 -29.37036 -26.87370 -25.46302 -24.46180 -24.09201 -22.78213 -22.62040 -21.71028 -20.39941 -19.41398 -18.53437 -17.50702 -17.12003 -16.94413 -16.46202 -15.85828 -15.24913 -15.16933 -15.02199 -14.53139 -14.35797 -14.09544 -13.98268 -13.86551 -13.78475 -13.38814 -13.15711 -13.05972 -12.72803 -12.56569 -12.44449 -12.10899 -11.72525 -11.67600 -11.36194 -11.21964 -10.99058 -10.84620 -10.72550 -10.55190 -10.44125 -10.20370 -10.06525 -9.81928 -9.76945 -9.66995 -9.33534 -8.94666 -8.59176 -8.41482 -7.00850 -5.81873 -3.10751 -0.08237 0.38152 1.52304 2.29356 2.83491 3.10026 3.38856 3.44394 3.46932 3.73162 4.05435 4.17728 4.20184 4.41354 4.46299 4.53508 4.67464 4.76953 4.85917 5.02996 5.16378 5.19466 5.24576 5.29011 5.33421 5.35693 5.46690 5.53131 5.58485 5.63634 5.68741 5.71588 5.88602 5.92490 5.93974 6.02907 6.08912 6.24846 6.25308 6.31773 6.37567 6.38719 6.47442 6.57340 6.75562 6.87256 6.99928 7.36967 7.61429 7.64596 8.05553 8.36222 9.47783 10.04997 10.39696 11.40638 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.002630 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.529488 B =10642.949418 C =11744.815549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.555 3.445 7 O -0.540 6.540 8 C -0.102 4.102 9 C -0.097 4.097 10 C -0.092 4.092 11 C -0.099 4.099 12 C 0.144 3.856 13 N -0.486 5.486 14 C 0.072 3.928 15 C -0.145 4.145 16 C -0.032 4.032 17 C -0.051 4.051 18 C 0.093 3.907 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.947 -5.486 16.007 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.003 4.003 5 N -0.328 5.328 6 C 0.344 3.656 7 O -0.419 6.419 8 C -0.106 4.106 9 C -0.115 4.115 10 C -0.112 4.112 11 C -0.101 4.101 12 C -0.028 4.028 13 N -0.193 5.193 14 C -0.071 4.071 15 C -0.164 4.164 16 C -0.037 4.037 17 C -0.070 4.070 18 C -0.030 4.030 19 C -0.194 4.194 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.558 -5.298 16.386 23.208 hybrid contribution -1.082 0.044 -1.103 1.546 sum 14.476 -5.254 15.283 21.696 Atomic orbital electron populations 1.21658 0.94013 1.01798 1.01909 1.21744 0.96661 1.00093 0.94510 0.91208 1.21772 0.77863 1.01019 0.99611 1.48059 1.07283 1.59666 1.17834 1.18298 0.86095 0.78694 0.82558 1.90770 1.74861 1.41580 1.34672 1.20014 0.93591 0.96076 1.00941 1.21242 0.96129 0.96730 0.97384 1.20901 0.92586 0.98754 0.98972 1.19153 0.95661 0.95108 1.00203 1.23255 0.88262 0.97426 0.93839 1.67391 1.40663 1.02172 1.09106 1.22195 0.94093 0.94172 0.96660 1.21994 0.94124 0.99905 1.00415 1.18117 0.93696 0.94141 0.97774 1.21349 0.90981 0.98962 0.95696 1.22385 0.98512 0.97368 0.84740 1.22712 1.00429 1.00482 0.95736 1.20194 0.90298 0.95703 0.86449 0.93374 1.42418 1.76445 1.11447 1.05754 1.19249 1.35877 0.94112 0.87672 0.91181 1.24738 1.02047 0.96025 0.98079 1.69665 1.49926 1.09532 1.28830 0.86156 0.77335 0.78858 0.84055 1.20578 1.21899 1.21933 0.93787 0.90702 0.93021 0.91291 0.89209 0.84090 0.84168 0.81746 0.82841 0.84140 0.83998 0.89268 0.91124 0.90434 0.92174 0.78209 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.02 37.16 0.34 -1.81 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.98 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.66 5.73 -3.71 -0.02 1.64 16 5 N -0.60 -8.05 2.97 -173.86 -0.52 -8.57 16 6 C 0.56 7.92 7.37 -12.31 -0.09 7.83 16 7 O -0.54 -9.30 16.21 5.33 0.09 -9.21 16 8 C -0.10 -1.20 5.29 -104.95 -0.56 -1.75 16 9 C -0.10 -0.90 7.23 -39.55 -0.29 -1.19 16 10 C -0.09 -0.74 9.77 -39.59 -0.39 -1.13 16 11 C -0.10 -0.93 5.75 -106.78 -0.61 -1.54 16 12 C 0.14 1.24 11.04 -16.98 -0.19 1.05 16 13 N -0.49 -4.87 10.29 -13.15 -0.14 -5.01 16 14 C 0.07 0.63 11.07 -17.96 -0.20 0.43 16 15 C -0.14 -1.27 9.88 -39.36 -0.39 -1.65 16 16 C -0.03 -0.33 5.74 -106.83 -0.61 -0.94 16 17 C -0.05 -0.57 9.39 -38.78 -0.36 -0.93 16 18 C 0.09 1.13 4.76 -3.71 -0.02 1.11 16 19 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 20 C 0.18 3.34 2.19 -67.89 -0.15 3.19 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.87 4.41 -53.39 -0.24 -17.10 16 23 C -0.24 -6.23 9.93 -15.05 -0.15 -6.38 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 27 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16 36 H 0.14 1.11 6.00 -52.49 -0.32 0.80 16 37 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 41 H 0.14 1.53 7.98 -52.48 -0.42 1.11 16 42 H 0.09 0.95 4.44 -51.93 -0.23 0.72 16 43 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.38 9.78 7.50 -40.82 -0.31 9.48 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -32.32 379.22 -10.17 -42.49 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.63 Total: 8.72 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -4.16 Total: -7.11 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.16 Total: -57.29 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.32 -10.17 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.652 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds