Wall clock time and date at job start Tue Mar 31 2020 22:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49664 * 2 1 4 4 C 1.53197 * 109.49806 * 120.05709 * 2 1 3 5 5 N 1.46919 * 108.77414 * 174.58728 * 4 2 1 6 6 C 1.34786 * 120.62900 * 126.11596 * 5 4 2 7 7 O 1.21544 * 119.99935 * 354.53077 * 6 5 4 8 8 C 1.47886 * 119.99889 * 174.52143 * 6 5 4 9 9 C 1.40591 * 119.73243 * 324.55233 * 8 6 5 10 10 C 1.35855 * 120.95108 * 179.74403 * 9 8 6 11 11 C 1.40490 * 119.87865 * 0.52716 * 10 9 8 12 12 C 1.40480 * 121.83781 * 179.73749 * 11 10 9 13 13 N 1.31203 * 119.94284 * 180.02562 * 12 11 10 14 14 C 1.32565 * 122.80286 * 359.97438 * 13 12 11 15 15 C 1.36211 * 121.84572 * 359.97438 * 14 13 12 16 16 C 1.40763 * 118.67906 * 0.02562 * 15 14 13 17 17 C 1.38532 * 119.72605 * 144.82190 * 8 6 5 18 18 C 1.46927 * 118.74338 * 306.39476 * 5 4 2 19 19 C 1.53194 * 108.77234 * 53.60703 * 18 5 4 20 20 C 1.53032 * 109.49964 * 239.89713 * 2 1 3 21 21 H 1.09002 * 109.46037 * 298.69016 * 20 2 1 22 22 N 1.46499 * 109.45990 * 58.66335 * 20 2 1 23 23 C 1.36943 * 120.00149 * 205.00215 * 22 20 2 24 24 H 1.08001 * 119.99847 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00046 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00090 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99836 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47023 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47114 * 120.00204 * 27 25 23 30 30 H 1.48495 * 109.47074 * 240.00128 * 27 25 23 31 31 H 1.08997 * 109.47024 * 299.93957 * 1 2 3 32 32 H 1.08996 * 109.46987 * 59.94425 * 1 2 3 33 33 H 1.09001 * 109.46513 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.58545 * 54.80213 * 4 2 1 35 35 H 1.09000 * 109.70222 * 294.44586 * 4 2 1 36 36 H 1.07999 * 119.52305 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.05693 * 180.28406 * 10 9 8 38 38 H 1.08000 * 120.02906 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.07444 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.66092 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.36643 * 359.96331 * 17 8 6 42 42 H 1.09003 * 109.58676 * 173.39494 * 18 5 4 43 43 H 1.09001 * 109.58597 * 293.82231 * 18 5 4 44 44 H 1.09005 * 109.49510 * 185.41898 * 19 18 5 45 45 H 1.08994 * 109.52360 * 65.33869 * 19 18 5 46 46 H 0.97001 * 120.00224 * 24.99747 * 22 20 2 47 47 H 0.96992 * 120.00139 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7233 1.2499 5 7 3.5046 -0.8286 1.1699 6 6 4.2814 -0.3800 2.1759 7 8 3.7805 0.2064 3.1154 8 6 5.7430 -0.6014 2.1367 9 6 6.2537 -1.7896 1.5854 10 6 7.5922 -2.0164 1.5321 11 6 8.4850 -1.0596 2.0430 12 6 9.8760 -1.2540 2.0141 13 7 10.6759 -0.3357 2.5023 14 6 10.2318 0.7943 3.0345 15 6 8.9020 1.0794 3.1096 16 6 7.9806 0.1419 2.6061 17 6 6.5976 0.3613 2.6487 18 6 4.1054 -1.4266 -0.0302 19 6 3.5709 -0.6953 -1.2657 20 6 2.0409 -0.7235 -1.2480 21 1 1.6970 -1.7578 -1.2344 22 7 1.5266 -0.0538 -2.4452 23 6 1.3965 -0.7506 -3.6169 24 1 1.6734 -1.7937 -3.6585 25 6 0.9087 -0.1161 -4.7512 26 7 0.5708 1.1549 -4.7004 27 14 0.7319 -1.0664 -6.3497 28 1 1.1772 -2.4681 -6.1441 29 1 -0.6902 -1.0559 -6.7771 30 1 1.5688 -0.4305 -7.3987 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5147 -0.8895 33 1 -0.3632 -1.0277 -0.0005 34 1 1.6053 -1.7211 1.2987 35 1 1.7637 -0.1592 2.1403 36 1 5.5723 -2.5312 1.1953 37 1 7.9689 -2.9323 1.1012 38 1 10.2866 -2.1585 1.5903 39 1 10.9444 1.5089 3.4192 40 1 8.5613 2.0064 3.5468 41 1 6.2021 1.2714 3.0750 42 1 5.1897 -1.3244 0.0144 43 1 3.8377 -2.4817 -0.0858 44 1 3.9335 -1.1904 -2.1666 45 1 3.9159 0.3385 -1.2547 46 1 1.2782 0.8831 -2.4079 47 1 0.2296 1.5981 -5.4928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036245459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:25 Heat of formation + Delta-G solvation = 19.198082 kcal Electronic energy + Delta-G solvation = -28901.788586 eV Core-core repulsion = 25048.853306 eV Total energy + Delta-G solvation = -3852.935280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11522 -41.16152 -39.16536 -38.03660 -36.25229 -34.58375 -34.00481 -33.12424 -32.30035 -31.05636 -30.66376 -27.98883 -26.91475 -25.54301 -25.00367 -24.09152 -23.34352 -23.04871 -21.54677 -20.64013 -19.37831 -19.05372 -18.25623 -17.76646 -17.43260 -16.80665 -16.74102 -16.23889 -15.88831 -15.73162 -15.54103 -15.24188 -15.16778 -14.91675 -14.76860 -14.58099 -14.27439 -14.09878 -13.94676 -13.54301 -13.45906 -13.25389 -13.06656 -12.88575 -12.82983 -12.64772 -12.47777 -12.09496 -12.07194 -12.06980 -11.84451 -11.66267 -11.23305 -11.17113 -11.13706 -10.85170 -10.50453 -10.12395 -9.72989 -9.10621 -8.95217 -7.90505 -5.18105 -0.79847 -0.33209 0.81816 1.42324 1.49304 1.49669 1.59174 1.81747 2.19983 2.58660 3.03655 3.25997 3.43484 3.49797 3.54166 3.74109 3.77683 3.79146 3.83107 3.96467 4.03039 4.06392 4.10014 4.25004 4.33948 4.37085 4.48021 4.59643 4.63804 4.67736 4.73699 4.76867 4.79093 4.81607 4.94079 4.96346 5.00843 5.03726 5.14861 5.21810 5.24121 5.31749 5.39955 5.49739 5.56689 5.60811 5.63018 5.72069 6.28223 6.31300 6.96554 6.96930 7.37330 8.13507 8.36278 9.33448 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.002630 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.529488 B =10642.949418 C =11744.815549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 H 0.047 0.953 4 C 0.126 3.874 5 N -0.597 5.597 6 C 0.554 3.446 7 O -0.578 6.578 8 C -0.115 4.115 9 C -0.107 4.107 10 C -0.074 4.074 11 C -0.111 4.111 12 C 0.147 3.853 13 N -0.509 5.509 14 C 0.067 3.933 15 C -0.155 4.155 16 C -0.048 4.048 17 C -0.065 4.065 18 C 0.101 3.899 19 C -0.144 4.144 20 C 0.179 3.821 21 H 0.054 0.946 22 N -0.733 5.733 23 C -0.226 4.226 24 H 0.081 0.919 25 C -0.080 4.080 26 N -0.973 5.973 27 Si 0.967 3.033 28 H -0.261 1.261 29 H -0.299 1.299 30 H -0.299 1.299 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.160 0.840 37 H 0.180 0.820 38 H 0.198 0.802 39 H 0.175 0.825 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.369 0.631 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.891 -8.474 16.473 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 H 0.066 0.934 4 C 0.003 3.997 5 N -0.327 5.327 6 C 0.344 3.656 7 O -0.459 6.459 8 C -0.119 4.119 9 C -0.125 4.125 10 C -0.093 4.093 11 C -0.114 4.114 12 C -0.024 4.024 13 N -0.217 5.217 14 C -0.076 4.076 15 C -0.174 4.174 16 C -0.053 4.053 17 C -0.084 4.084 18 C -0.021 4.021 19 C -0.185 4.185 20 C 0.071 3.929 21 H 0.072 0.928 22 N -0.371 5.371 23 C -0.358 4.358 24 H 0.099 0.901 25 C -0.271 4.271 26 N -0.624 5.624 27 Si 0.797 3.203 28 H -0.185 1.185 29 H -0.227 1.227 30 H -0.227 1.227 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.178 0.822 37 H 0.198 0.802 38 H 0.215 0.785 39 H 0.192 0.808 40 H 0.173 0.827 41 H 0.151 0.849 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.056 0.944 46 H 0.201 0.799 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.535 -8.337 16.881 25.728 hybrid contribution -1.602 0.983 -1.149 2.203 sum 15.933 -7.354 15.732 23.567 Atomic orbital electron populations 1.21574 0.93849 1.02204 1.01136 1.21611 0.96766 0.98943 0.94763 0.93405 1.21675 0.78462 1.01778 0.97753 1.48108 1.07047 1.59464 1.18092 1.18720 0.87189 0.77718 0.82009 1.90744 1.75780 1.43238 1.36169 1.19956 0.91894 0.97599 1.02473 1.21400 0.97152 0.96103 0.97854 1.21317 0.91678 0.99338 0.96944 1.19446 0.96509 0.95102 1.00302 1.23807 0.87830 0.98044 0.92760 1.67457 1.41372 1.02906 1.09972 1.22575 0.94510 0.94343 0.96131 1.22204 0.94118 1.00449 1.00638 1.18317 0.93376 0.95242 0.98333 1.21356 0.91692 0.98983 0.96357 1.22461 0.99564 0.98037 0.82004 1.22510 0.98455 0.99804 0.97717 1.20445 0.91617 0.95544 0.85304 0.92757 1.42628 1.76829 1.10865 1.06817 1.19650 1.33313 0.94476 0.88330 0.90118 1.25506 1.03346 0.96914 1.01370 1.69829 1.52192 1.11250 1.29155 0.85151 0.76494 0.78486 0.80139 1.18545 1.22659 1.22678 0.91839 0.94171 0.91942 0.88940 0.89813 0.82225 0.80236 0.78489 0.80795 0.82699 0.84881 0.87139 0.88094 0.91044 0.94381 0.79949 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.02 71.98 0.65 -3.43 16 2 C -0.10 -3.20 2.46 -10.72 -0.03 -3.23 16 3 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 4 C 0.13 3.32 5.73 86.37 0.49 3.82 16 5 N -0.60 -15.11 2.97 -822.25 -2.44 -17.56 16 6 C 0.55 15.40 7.37 86.80 0.64 16.04 16 7 O -0.58 -20.11 16.21 -3.85 -0.06 -20.17 16 8 C -0.11 -2.57 5.29 -20.08 -0.11 -2.67 16 9 C -0.11 -1.66 7.23 22.29 0.16 -1.50 16 10 C -0.07 -0.89 9.77 22.27 0.22 -0.67 16 11 C -0.11 -1.80 5.75 -21.26 -0.12 -1.92 16 12 C 0.15 2.09 11.04 85.33 0.94 3.03 16 13 N -0.51 -9.15 10.29 -195.52 -2.01 -11.16 16 14 C 0.07 1.07 11.07 84.11 0.93 2.00 16 15 C -0.15 -2.58 9.88 22.41 0.22 -2.35 16 16 C -0.05 -0.93 5.74 -21.29 -0.12 -1.05 16 17 C -0.06 -1.44 9.39 22.79 0.21 -1.23 16 18 C 0.10 2.18 4.76 86.36 0.41 2.59 16 19 C -0.14 -4.45 5.66 30.67 0.17 -4.28 16 20 C 0.18 6.39 2.19 45.02 0.10 6.49 16 21 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 22 N -0.73 -34.78 4.41 -322.82 -1.42 -36.21 16 23 C -0.23 -11.78 9.93 84.03 0.83 -10.95 16 24 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 25 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 26 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 27 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 28 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.37 6.99 -2.39 -0.02 2.35 16 36 H 0.16 1.82 6.00 -2.91 -0.02 1.80 16 37 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.13 3.03 7.98 -2.91 -0.02 3.01 16 42 H 0.11 2.00 4.44 -2.39 -0.01 1.99 16 43 H 0.10 1.66 8.05 -2.39 -0.02 1.64 16 44 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.37 19.57 7.50 -92.71 -0.70 18.87 16 47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -72.53 379.22 2.74 -69.79 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.30 Total: 30.21 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 6.08 Total: -3.28 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -5.60 Total: -123.46 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.06 Total: -20.17 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -72.53 2.74 -69.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.985 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds