Wall clock time and date at job start Tue Mar 31 2020 22:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.49655 * 2 1 4 4 C 1.53618 * 109.43570 * 120.22273 * 2 1 3 5 5 N 1.46931 * 108.54697 * 174.72502 * 4 2 1 6 6 C 1.34773 * 120.62774 * 126.36704 * 5 4 2 7 7 O 1.21549 * 120.00591 * 4.24596 * 6 5 4 8 8 C 1.47893 * 119.99915 * 184.24092 * 6 5 4 9 9 C 1.40595 * 119.72802 * 309.59669 * 8 6 5 10 10 C 1.35850 * 120.95179 * 179.97438 * 9 8 6 11 11 C 1.40494 * 119.87929 * 359.97438 * 10 9 8 12 12 C 1.40485 * 121.84101 * 179.97438 * 11 10 9 13 13 N 1.31208 * 119.94104 * 180.02562 * 12 11 10 14 14 C 1.32557 * 122.80436 * 359.97438 * 13 12 11 15 15 C 1.36217 * 121.84770 * 359.97438 * 14 13 12 16 16 C 1.40762 * 118.67471 * 0.02562 * 15 14 13 17 17 C 1.38529 * 119.72758 * 129.56927 * 8 6 5 18 18 C 1.46918 * 118.73667 * 306.09904 * 5 4 2 19 19 C 1.53197 * 108.77896 * 53.85817 * 18 5 4 20 20 C 1.53039 * 109.30977 * 305.36453 * 19 18 5 21 21 H 1.08997 * 109.46444 * 181.38718 * 20 19 18 22 22 N 1.46503 * 109.46311 * 301.34365 * 20 19 18 23 23 C 1.36933 * 120.00051 * 275.00509 * 22 20 19 24 24 H 1.08000 * 120.00002 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00326 * 179.97438 * 23 22 20 26 26 N 1.31625 * 119.99941 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 120.00363 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46769 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47182 * 119.99998 * 27 25 23 30 30 H 1.48495 * 109.46867 * 240.00264 * 27 25 23 31 31 H 1.09008 * 109.46841 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47199 * 300.06233 * 1 2 3 33 33 H 1.09003 * 109.47705 * 60.06562 * 1 2 3 34 34 H 1.09008 * 109.73972 * 54.98686 * 4 2 1 35 35 H 1.09006 * 109.66651 * 294.42012 * 4 2 1 36 36 H 1.08004 * 119.52716 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.06168 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.02695 * 0.02562 * 12 11 10 39 39 H 1.08007 * 119.07826 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.66396 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.36516 * 0.02562 * 17 8 6 42 42 H 1.09004 * 109.58822 * 173.64411 * 18 5 4 43 43 H 1.09002 * 109.58689 * 294.06952 * 18 5 4 44 44 H 1.08996 * 109.49385 * 65.31164 * 19 18 5 45 45 H 1.08994 * 109.49660 * 185.41593 * 19 18 5 46 46 H 0.96996 * 119.99864 * 94.99386 * 22 20 19 47 47 H 0.96998 * 119.99908 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0411 -0.7292 1.2517 5 7 3.5047 -0.8294 1.1693 6 6 4.2811 -0.3869 2.1781 7 8 3.7713 0.0295 3.1999 8 6 5.7536 -0.4080 2.0419 9 6 6.3987 -1.5865 1.6278 10 6 7.7497 -1.6335 1.4939 11 6 8.5206 -0.4921 1.7708 12 6 9.9200 -0.4948 1.6466 13 7 10.6034 0.5925 1.9154 14 6 10.0309 1.7221 2.3073 15 6 8.6813 1.8294 2.4576 16 6 7.8800 0.7041 2.1877 17 6 6.4859 0.7339 2.3229 18 6 4.1053 -1.4265 -0.0312 19 6 3.5708 -0.6945 -1.2663 20 6 2.0408 -0.7226 -1.2486 21 1 1.6580 -0.2238 -2.1390 22 7 1.5783 -2.1126 -1.2314 23 6 1.4469 -2.8050 -2.4055 24 1 1.6837 -2.3262 -3.3442 25 6 1.0092 -4.1222 -2.3893 26 7 0.7210 -4.7058 -1.2453 27 14 0.8292 -5.0665 -3.9910 28 1 1.2139 -4.1914 -5.1274 29 1 1.7130 -6.2595 -3.9643 30 1 -0.5819 -5.4992 -4.1545 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.6085 -1.7287 1.2980 35 1 1.7630 -0.1668 2.1431 36 1 5.8116 -2.4673 1.4130 37 1 8.2303 -2.5464 1.1744 38 1 10.4327 -1.3911 1.3301 39 1 10.6518 2.5817 2.5123 40 1 8.2351 2.7591 2.7784 41 1 5.9874 1.6377 2.6408 42 1 5.1896 -1.3244 0.0133 43 1 3.8376 -2.4816 -0.0875 44 1 3.9158 0.3394 -1.2540 45 1 3.9334 -1.1889 -2.1674 46 1 1.3654 -2.5425 -0.3884 47 1 0.4148 -5.6262 -1.2340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036245461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:30 Heat of formation + Delta-G solvation = 35.600218 kcal Electronic energy + Delta-G solvation = -29370.760019 eV Core-core repulsion = 25518.535989 eV Total energy + Delta-G solvation = -3852.224030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.20315 -40.06868 -37.98341 -37.06801 -34.39307 -33.28874 -32.96133 -31.56854 -31.32980 -29.92994 -29.22563 -26.74816 -25.46141 -24.34518 -23.93873 -23.41339 -22.55298 -21.70692 -20.33657 -18.61736 -18.24287 -17.39846 -17.36973 -16.84687 -16.40254 -15.75265 -15.19897 -15.06108 -14.70843 -14.49642 -14.39006 -14.07003 -13.94715 -13.91884 -13.71527 -13.34870 -13.03287 -12.91218 -12.67713 -12.52459 -12.39873 -12.15591 -11.58254 -11.44455 -11.32453 -11.23393 -10.96557 -10.84134 -10.61589 -10.55388 -10.40558 -10.20396 -9.94376 -9.90048 -9.69619 -9.60497 -9.21926 -8.97494 -8.39574 -8.29014 -7.03065 -5.84216 -3.12832 0.01318 0.49366 1.60764 2.44316 2.90993 3.19823 3.37559 3.44171 3.45979 3.79514 4.11759 4.26287 4.33505 4.50608 4.52909 4.55551 4.78781 4.84384 4.98400 5.14073 5.25262 5.28080 5.31086 5.40973 5.42584 5.48480 5.53581 5.66007 5.68704 5.75981 5.78138 5.85862 5.97707 6.01351 6.03768 6.07149 6.17597 6.26804 6.32203 6.34780 6.44332 6.46230 6.56710 6.62964 6.70189 6.86861 6.93877 7.57125 7.64537 7.67680 8.20594 8.34225 9.46083 10.02149 10.37334 11.38138 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002960 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.816345 B = 9457.743227 C =10571.049921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.553 3.447 7 O -0.544 6.544 8 C -0.091 4.091 9 C -0.092 4.092 10 C -0.090 4.090 11 C -0.102 4.102 12 C 0.145 3.855 13 N -0.488 5.488 14 C 0.071 3.929 15 C -0.147 4.147 16 C -0.029 4.029 17 C -0.062 4.062 18 C 0.103 3.897 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.719 5.719 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.153 0.847 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.305 10.952 6.053 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.340 3.660 7 O -0.423 6.423 8 C -0.095 4.095 9 C -0.111 4.111 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.026 4.026 13 N -0.196 5.196 14 C -0.072 4.072 15 C -0.167 4.167 16 C -0.034 4.034 17 C -0.081 4.081 18 C -0.018 4.018 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.170 0.830 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.906 11.240 6.359 19.722 hybrid contribution -1.126 -0.785 -0.662 1.524 sum 13.780 10.455 5.697 18.211 Atomic orbital electron populations 1.21669 0.94128 1.03253 1.00487 1.21785 0.96574 0.98780 0.95653 0.91608 1.21805 0.78012 1.01824 0.98691 1.48076 1.07245 1.58873 1.17908 1.18310 0.86209 0.78004 0.83479 1.90773 1.74827 1.48127 1.28551 1.20036 0.93815 0.95015 1.00672 1.21120 0.95033 0.97654 0.97266 1.20905 0.93438 0.97508 0.99083 1.19137 0.95504 0.94413 1.01339 1.23251 0.89452 0.96468 0.93452 1.67386 1.41481 0.99625 1.11083 1.22171 0.92689 0.95629 0.96677 1.21962 0.95040 0.98585 1.01089 1.18088 0.93570 0.93589 0.98169 1.21233 0.91840 0.98062 0.96977 1.22080 0.97112 0.99009 0.83648 1.22527 1.00461 0.98649 0.97431 1.20219 0.90753 0.87395 0.94849 0.93071 1.42485 1.78984 1.07692 1.06952 1.19252 1.37160 0.93832 0.86557 0.91210 1.24706 1.02259 0.97197 0.96608 1.69657 1.51752 1.13005 1.23607 0.86172 0.77317 0.79964 0.83043 1.20635 1.21965 1.21967 0.90982 0.93730 0.92760 0.90309 0.89686 0.84297 0.84153 0.81778 0.82953 0.84283 0.84349 0.90341 0.89381 0.93340 0.90656 0.78108 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.05 37.15 0.34 -1.80 16 2 C -0.11 -1.70 2.69 -90.28 -0.24 -1.94 16 3 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 4 C 0.12 1.94 5.43 -3.49 -0.02 1.92 16 5 N -0.59 -9.23 2.97 -173.59 -0.51 -9.74 16 6 C 0.55 8.75 7.22 -12.31 -0.09 8.66 16 7 O -0.54 -10.17 16.46 5.32 0.09 -10.08 16 8 C -0.09 -1.19 5.03 -104.95 -0.53 -1.72 16 9 C -0.09 -1.04 7.23 -39.55 -0.29 -1.33 16 10 C -0.09 -0.85 9.77 -39.59 -0.39 -1.24 16 11 C -0.10 -1.05 5.75 -106.78 -0.61 -1.66 16 12 C 0.15 1.36 11.04 -16.97 -0.19 1.17 16 13 N -0.49 -5.16 10.29 -13.15 -0.14 -5.30 16 14 C 0.07 0.65 11.07 -17.97 -0.20 0.45 16 15 C -0.15 -1.35 9.88 -39.36 -0.39 -1.74 16 16 C -0.03 -0.32 5.74 -106.82 -0.61 -0.93 16 17 C -0.06 -0.74 9.51 -38.78 -0.37 -1.11 16 18 C 0.10 1.56 5.08 -3.71 -0.02 1.54 16 19 C -0.15 -2.37 5.78 -26.61 -0.15 -2.53 16 20 C 0.18 3.19 2.53 -67.89 -0.17 3.02 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -15.91 3.64 -53.39 -0.19 -16.10 16 23 C -0.24 -5.99 9.93 -15.06 -0.15 -6.14 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -26.41 13.06 55.49 0.72 -25.69 16 27 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 31 H 0.07 1.30 7.54 -51.92 -0.39 0.91 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.42 6.64 -51.92 -0.34 1.08 16 35 H 0.08 1.39 7.03 -51.93 -0.36 1.03 16 36 H 0.14 1.52 6.97 -52.48 -0.37 1.16 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.08 1.02 4.47 -51.93 -0.23 0.79 16 43 H 0.09 1.55 7.74 -51.93 -0.40 1.14 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.38 9.12 5.92 -40.82 -0.24 8.88 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -30.78 377.02 -10.09 -40.87 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.54 Total: 9.85 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -4.18 Total: -5.78 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.12 Total: -56.83 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.78 -10.09 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.469 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds