Wall clock time and date at job start Tue Mar 31 2020 22:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.49655 * 2 1 4 4 C 1.53618 * 109.43570 * 120.22273 * 2 1 3 5 5 N 1.46931 * 108.54697 * 174.72502 * 4 2 1 6 6 C 1.34773 * 120.62774 * 126.36704 * 5 4 2 7 7 O 1.21549 * 120.00591 * 4.24596 * 6 5 4 8 8 C 1.47893 * 119.99915 * 184.24092 * 6 5 4 9 9 C 1.40595 * 119.72802 * 309.59669 * 8 6 5 10 10 C 1.35850 * 120.95179 * 179.97438 * 9 8 6 11 11 C 1.40494 * 119.87929 * 359.97438 * 10 9 8 12 12 C 1.40485 * 121.84101 * 179.97438 * 11 10 9 13 13 N 1.31208 * 119.94104 * 180.02562 * 12 11 10 14 14 C 1.32557 * 122.80436 * 359.97438 * 13 12 11 15 15 C 1.36217 * 121.84770 * 359.97438 * 14 13 12 16 16 C 1.40762 * 118.67471 * 0.02562 * 15 14 13 17 17 C 1.38529 * 119.72758 * 129.56927 * 8 6 5 18 18 C 1.46918 * 118.73667 * 306.09904 * 5 4 2 19 19 C 1.53197 * 108.77896 * 53.85817 * 18 5 4 20 20 C 1.53039 * 109.30977 * 305.36453 * 19 18 5 21 21 H 1.08997 * 109.46444 * 181.38718 * 20 19 18 22 22 N 1.46503 * 109.46311 * 301.34365 * 20 19 18 23 23 C 1.36933 * 120.00051 * 275.00509 * 22 20 19 24 24 H 1.08000 * 120.00002 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00326 * 179.97438 * 23 22 20 26 26 N 1.31625 * 119.99941 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 120.00363 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46769 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47182 * 119.99998 * 27 25 23 30 30 H 1.48495 * 109.46867 * 240.00264 * 27 25 23 31 31 H 1.09008 * 109.46841 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47199 * 300.06233 * 1 2 3 33 33 H 1.09003 * 109.47705 * 60.06562 * 1 2 3 34 34 H 1.09008 * 109.73972 * 54.98686 * 4 2 1 35 35 H 1.09006 * 109.66651 * 294.42012 * 4 2 1 36 36 H 1.08004 * 119.52716 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.06168 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.02695 * 0.02562 * 12 11 10 39 39 H 1.08007 * 119.07826 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.66396 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.36516 * 0.02562 * 17 8 6 42 42 H 1.09004 * 109.58822 * 173.64411 * 18 5 4 43 43 H 1.09002 * 109.58689 * 294.06952 * 18 5 4 44 44 H 1.08996 * 109.49385 * 65.31164 * 19 18 5 45 45 H 1.08994 * 109.49660 * 185.41593 * 19 18 5 46 46 H 0.96996 * 119.99864 * 94.99386 * 22 20 19 47 47 H 0.96998 * 119.99908 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0411 -0.7292 1.2517 5 7 3.5047 -0.8294 1.1693 6 6 4.2811 -0.3869 2.1781 7 8 3.7713 0.0295 3.1999 8 6 5.7536 -0.4080 2.0419 9 6 6.3987 -1.5865 1.6278 10 6 7.7497 -1.6335 1.4939 11 6 8.5206 -0.4921 1.7708 12 6 9.9200 -0.4948 1.6466 13 7 10.6034 0.5925 1.9154 14 6 10.0309 1.7221 2.3073 15 6 8.6813 1.8294 2.4576 16 6 7.8800 0.7041 2.1877 17 6 6.4859 0.7339 2.3229 18 6 4.1053 -1.4265 -0.0312 19 6 3.5708 -0.6945 -1.2663 20 6 2.0408 -0.7226 -1.2486 21 1 1.6580 -0.2238 -2.1390 22 7 1.5783 -2.1126 -1.2314 23 6 1.4469 -2.8050 -2.4055 24 1 1.6837 -2.3262 -3.3442 25 6 1.0092 -4.1222 -2.3893 26 7 0.7210 -4.7058 -1.2453 27 14 0.8292 -5.0665 -3.9910 28 1 1.2139 -4.1914 -5.1274 29 1 1.7130 -6.2595 -3.9643 30 1 -0.5819 -5.4992 -4.1545 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.6085 -1.7287 1.2980 35 1 1.7630 -0.1668 2.1431 36 1 5.8116 -2.4673 1.4130 37 1 8.2303 -2.5464 1.1744 38 1 10.4327 -1.3911 1.3301 39 1 10.6518 2.5817 2.5123 40 1 8.2351 2.7591 2.7784 41 1 5.9874 1.6377 2.6408 42 1 5.1896 -1.3244 0.0133 43 1 3.8376 -2.4816 -0.0875 44 1 3.9158 0.3394 -1.2540 45 1 3.9334 -1.1889 -2.1674 46 1 1.3654 -2.5425 -0.3884 47 1 0.4148 -5.6262 -1.2340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036245461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:29 Heat of formation + Delta-G solvation = 18.801092 kcal Electronic energy + Delta-G solvation = -29371.488484 eV Core-core repulsion = 25518.535989 eV Total energy + Delta-G solvation = -3852.952495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.09801 -41.18668 -39.27247 -38.02415 -35.92107 -34.53924 -34.02606 -33.03988 -32.30768 -30.94963 -30.66885 -27.95830 -26.85258 -25.50714 -25.20197 -24.60063 -23.33939 -23.04705 -21.46467 -19.92310 -19.31095 -19.17481 -18.30956 -17.73266 -17.51984 -16.81174 -16.60741 -16.15484 -15.93449 -15.86420 -15.59076 -15.23147 -15.14606 -14.88796 -14.78972 -14.56838 -14.31023 -14.13581 -13.89391 -13.53271 -13.48641 -13.32867 -12.97951 -12.88304 -12.81663 -12.63260 -12.41610 -12.16011 -12.04828 -11.95882 -11.92111 -11.59103 -11.23966 -11.19913 -11.10131 -10.85132 -10.49572 -10.10612 -9.67570 -9.10858 -8.91534 -7.87752 -5.13889 -0.76918 -0.31844 0.83341 1.40739 1.49631 1.51698 1.59673 1.81618 2.11689 2.60618 3.03125 3.25982 3.46400 3.50169 3.54591 3.74678 3.78035 3.83544 3.87250 3.99227 4.03287 4.07395 4.08756 4.27606 4.33017 4.37500 4.50100 4.59342 4.62288 4.64904 4.70402 4.73863 4.83040 4.94023 4.95471 5.01792 5.03508 5.12982 5.16711 5.22267 5.23530 5.28064 5.29266 5.47076 5.58552 5.61137 5.62707 5.71599 6.32040 6.34209 6.95470 6.97855 7.41969 8.17416 8.41341 9.35551 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002960 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.816345 B = 9457.743227 C =10571.049921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.123 3.877 5 N -0.590 5.590 6 C 0.554 3.446 7 O -0.578 6.578 8 C -0.108 4.108 9 C -0.110 4.110 10 C -0.072 4.072 11 C -0.112 4.112 12 C 0.147 3.853 13 N -0.508 5.508 14 C 0.068 3.932 15 C -0.151 4.151 16 C -0.042 4.042 17 C -0.063 4.063 18 C 0.113 3.887 19 C -0.142 4.142 20 C 0.173 3.827 21 H 0.048 0.952 22 N -0.724 5.724 23 C -0.223 4.223 24 H 0.075 0.925 25 C -0.072 4.072 26 N -0.968 5.968 27 Si 0.961 3.039 28 H -0.267 1.267 29 H -0.298 1.298 30 H -0.302 1.302 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.173 0.827 38 H 0.195 0.805 39 H 0.178 0.822 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.708 12.427 5.345 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.104 0.896 4 C 0.000 4.000 5 N -0.320 5.320 6 C 0.343 3.657 7 O -0.460 6.460 8 C -0.112 4.112 9 C -0.128 4.128 10 C -0.091 4.091 11 C -0.115 4.115 12 C -0.024 4.024 13 N -0.216 5.216 14 C -0.075 4.075 15 C -0.170 4.170 16 C -0.048 4.048 17 C -0.082 4.082 18 C -0.009 4.009 19 C -0.183 4.183 20 C 0.064 3.936 21 H 0.066 0.934 22 N -0.365 5.365 23 C -0.355 4.355 24 H 0.093 0.907 25 C -0.265 4.265 26 N -0.620 5.620 27 Si 0.793 3.207 28 H -0.192 1.192 29 H -0.225 1.225 30 H -0.230 1.230 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.155 0.845 37 H 0.190 0.810 38 H 0.211 0.789 39 H 0.195 0.805 40 H 0.178 0.822 41 H 0.159 0.841 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.336 12.763 5.619 22.249 hybrid contribution -1.761 -1.121 -0.395 2.125 sum 15.575 11.642 5.224 20.134 Atomic orbital electron populations 1.21604 0.93943 1.01582 1.01838 1.21707 0.96668 0.99254 0.94111 0.89569 1.21661 0.78754 1.00524 0.99038 1.48088 1.06893 1.58821 1.18170 1.18750 0.87436 0.76879 0.82621 1.90743 1.75809 1.49689 1.29709 1.19880 0.91934 0.96445 1.02943 1.21115 0.95934 0.97023 0.98760 1.21216 0.92545 0.98389 0.96944 1.19378 0.96209 0.94454 1.01411 1.23731 0.89071 0.97199 0.92431 1.67460 1.42105 1.00352 1.11700 1.22623 0.93072 0.96064 0.95710 1.22209 0.95032 0.98961 1.00796 1.18302 0.93277 0.94708 0.98471 1.21298 0.92392 0.97800 0.96715 1.21985 0.98603 0.97177 0.83152 1.22406 0.98447 1.00056 0.97388 1.20432 0.92177 0.85245 0.95752 0.93395 1.42590 1.79072 1.09219 1.05631 1.19577 1.34545 0.93763 0.87642 0.90717 1.25362 1.03662 0.98443 0.99000 1.69805 1.53961 1.12816 1.25374 0.85236 0.76341 0.78656 0.80512 1.19173 1.22537 1.22962 0.94073 0.91663 0.92127 0.92722 0.89708 0.84493 0.80960 0.78871 0.80538 0.82174 0.84087 0.87734 0.92162 0.91005 0.91282 0.79264 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.05 71.98 0.65 -3.39 16 2 C -0.10 -3.01 2.69 -10.57 -0.03 -3.04 16 3 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 4 C 0.12 4.07 5.43 86.51 0.47 4.54 16 5 N -0.59 -18.43 2.97 -821.40 -2.44 -20.87 16 6 C 0.55 17.52 7.22 86.80 0.63 18.14 16 7 O -0.58 -21.89 16.46 -3.87 -0.06 -21.95 16 8 C -0.11 -2.74 5.03 -20.08 -0.10 -2.84 16 9 C -0.11 -2.35 7.23 22.29 0.16 -2.18 16 10 C -0.07 -1.18 9.77 22.27 0.22 -0.96 16 11 C -0.11 -2.03 5.75 -21.26 -0.12 -2.16 16 12 C 0.15 2.31 11.04 85.33 0.94 3.25 16 13 N -0.51 -9.36 10.29 -195.51 -2.01 -11.37 16 14 C 0.07 1.06 11.07 84.11 0.93 1.99 16 15 C -0.15 -2.40 9.88 22.42 0.22 -2.18 16 16 C -0.04 -0.85 5.74 -21.29 -0.12 -0.97 16 17 C -0.06 -1.42 9.51 22.79 0.22 -1.21 16 18 C 0.11 3.35 5.08 86.37 0.44 3.79 16 19 C -0.14 -4.33 5.78 30.67 0.18 -4.15 16 20 C 0.17 6.08 2.53 45.02 0.11 6.19 16 21 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 22 N -0.72 -32.51 3.64 -322.82 -1.17 -33.68 16 23 C -0.22 -11.33 9.93 84.03 0.83 -10.49 16 24 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 25 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 26 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 27 Si 0.96 44.33 29.55 68.60 2.03 46.35 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 29 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 30 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 31 H 0.04 1.51 7.54 -2.38 -0.02 1.50 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 2.08 6.64 -2.38 -0.02 2.06 16 35 H 0.08 2.82 7.03 -2.38 -0.02 2.80 16 36 H 0.14 2.92 6.97 -2.91 -0.02 2.90 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 42 H 0.10 2.59 4.47 -2.38 -0.01 2.58 16 43 H 0.06 2.16 7.74 -2.39 -0.02 2.14 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.37 18.42 5.92 -92.71 -0.55 17.88 16 47 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -67.37 377.02 3.16 -64.21 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.45 Total: 32.65 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.09 Total: 0.88 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -5.34 Total: -122.14 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -67.37 3.16 -64.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036245461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.012 kcal (2) G-P(sol) polarization free energy of solvation -67.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds