Wall clock time and date at job start Tue Mar 31 2020 22:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.49797 * 2 1 4 4 C 1.53199 * 109.49812 * 239.94031 * 2 1 3 5 5 N 1.46921 * 108.77705 * 185.40922 * 4 2 1 6 6 C 1.34771 * 120.63352 * 233.63025 * 5 4 2 7 7 O 1.21500 * 119.99792 * 359.86065 * 6 5 4 8 8 C 1.48280 * 120.00190 * 179.86559 * 6 5 4 9 9 C 1.40278 * 119.23851 * 202.29758 * 8 6 5 10 10 C 1.36510 * 119.81448 * 179.69195 * 9 8 6 11 11 C 1.40758 * 118.24254 * 0.58846 * 10 9 8 12 12 C 1.40413 * 121.28312 * 179.64036 * 11 10 9 13 13 C 1.36129 * 119.65219 * 179.97438 * 12 11 10 14 14 C 1.39437 * 120.91454 * 0.04786 * 13 12 11 15 15 C 1.35994 * 121.08371 * 359.97438 * 14 13 12 16 16 C 1.40823 * 119.73258 * 359.97438 * 15 14 13 17 17 N 1.31875 * 119.23750 * 22.57124 * 8 6 5 18 18 C 1.46931 * 118.73713 * 53.60787 * 5 4 2 19 19 C 1.53184 * 108.77578 * 306.39106 * 18 5 4 20 20 C 1.53037 * 109.50143 * 120.10136 * 2 1 3 21 21 H 1.09001 * 109.45963 * 301.33309 * 20 2 1 22 22 N 1.46497 * 109.45837 * 61.29573 * 20 2 1 23 23 C 1.36947 * 119.99666 * 205.06907 * 22 20 2 24 24 H 1.07997 * 119.99884 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99771 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00072 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00078 * 180.02562 * 25 23 22 28 28 H 1.48491 * 109.47037 * 59.99625 * 27 25 23 29 29 H 1.48502 * 109.46970 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46600 * 299.99827 * 27 25 23 31 31 H 1.08998 * 109.46943 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46566 * 300.06148 * 1 2 3 33 33 H 1.08996 * 109.47560 * 60.06099 * 1 2 3 34 34 H 1.09000 * 109.58119 * 65.62381 * 4 2 1 35 35 H 1.09000 * 109.58230 * 305.20079 * 4 2 1 36 36 H 1.08000 * 120.09151 * 0.02562 * 9 8 6 37 37 H 1.08000 * 120.87310 * 180.26666 * 10 9 8 38 38 H 1.08002 * 120.17412 * 0.02693 * 12 11 10 39 39 H 1.07995 * 119.54336 * 180.02562 * 13 12 11 40 40 H 1.08000 * 119.45934 * 179.97438 * 14 13 12 41 41 H 1.07998 * 120.13429 * 179.97438 * 15 14 13 42 42 H 1.09004 * 109.58427 * 186.59925 * 18 5 4 43 43 H 1.09006 * 109.70482 * 66.24785 * 18 5 4 44 44 H 1.09011 * 109.49848 * 174.58594 * 19 18 5 45 45 H 1.08999 * 109.49767 * 294.67834 * 19 18 5 46 46 H 0.96991 * 120.00567 * 25.07229 * 22 20 2 47 47 H 0.97001 * 120.00096 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5046 -0.8286 -1.1700 6 6 4.2811 -0.3848 -2.1782 7 8 3.7720 0.1059 -3.1663 8 6 5.7566 -0.4952 -2.0815 9 6 6.5595 0.3525 -2.8589 10 6 7.9192 0.2652 -2.7745 11 6 8.4724 -0.6951 -1.9067 12 6 9.8623 -0.8450 -1.7758 13 6 10.3615 -1.7842 -0.9262 14 6 9.5112 -2.6021 -0.1830 15 6 8.1600 -2.4860 -0.2840 16 6 7.6043 -1.5256 -1.1512 17 7 6.2836 -1.3918 -1.2707 18 6 4.1053 -1.4266 0.0302 19 6 3.5709 -0.6954 1.2656 20 6 2.0409 -0.7235 1.2480 21 1 1.6583 -0.2252 2.1388 22 7 1.5784 -2.1134 1.2300 23 6 1.4470 -2.8066 2.4037 24 1 1.6846 -2.3286 3.3426 25 6 1.0093 -4.1237 2.3866 26 7 0.7202 -4.7063 1.2424 27 14 0.8293 -5.0691 3.9877 28 1 -0.1498 -4.3770 4.8637 29 1 0.3503 -6.4448 3.6991 30 1 2.1450 -5.1371 4.6729 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5148 0.8895 33 1 -0.3634 0.5128 -0.8905 34 1 1.7637 -0.1571 -2.1389 35 1 1.6052 -1.7211 -1.2986 36 1 6.1033 1.0759 -3.5184 37 1 8.5537 0.9123 -3.3620 38 1 10.5320 -0.2178 -2.3457 39 1 11.4308 -1.8976 -0.8267 40 1 9.9325 -3.3398 0.4837 41 1 7.5156 -3.1278 0.2985 42 1 5.1897 -1.3245 -0.0144 43 1 3.8398 -2.4823 0.0870 44 1 3.9336 -1.1904 2.1666 45 1 3.9160 0.3385 1.2540 46 1 1.3654 -2.5428 0.3868 47 1 0.4147 -5.6269 1.2304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036272746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:36 Heat of formation + Delta-G solvation = 50.577200 kcal Electronic energy + Delta-G solvation = -29677.577090 eV Core-core repulsion = 25826.002511 eV Total energy + Delta-G solvation = -3851.574579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28678 -39.75310 -37.82861 -36.94400 -34.44593 -33.66439 -32.71352 -31.33163 -30.86669 -30.25939 -29.09420 -26.64095 -25.47412 -24.33020 -23.69787 -23.35172 -22.35602 -21.54138 -20.41366 -18.49503 -18.14301 -17.67323 -17.25366 -16.94608 -15.95582 -15.44459 -15.24258 -14.83369 -14.70241 -14.55374 -14.26199 -14.12723 -13.88130 -13.74007 -13.37317 -13.27000 -13.20357 -12.83939 -12.47104 -12.25865 -11.96128 -11.85917 -11.73742 -11.42708 -11.26379 -11.12347 -10.88254 -10.80577 -10.70155 -10.50330 -10.41425 -10.18876 -10.08337 -9.78248 -9.50782 -9.10676 -9.01596 -8.78973 -8.45835 -8.14705 -6.91654 -5.74229 -3.02247 0.01534 0.47717 1.71616 2.34392 3.15182 3.18056 3.44521 3.49590 3.50246 3.84634 4.02222 4.30594 4.48688 4.56154 4.61103 4.63429 4.84652 4.90368 5.09429 5.18012 5.30003 5.39496 5.46339 5.52005 5.66733 5.68763 5.71069 5.74053 5.81096 5.90210 5.97382 6.01813 6.08498 6.12774 6.16143 6.20788 6.24901 6.33480 6.48987 6.52645 6.55505 6.62993 6.73213 6.85177 6.87597 7.02658 7.09620 7.50412 7.72162 7.75566 8.32635 8.44318 9.55675 10.13285 10.48555 11.48199 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.003608 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.645766 B = 7758.106243 C = 9627.705755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.116 3.884 5 N -0.573 5.573 6 C 0.561 3.439 7 O -0.547 6.547 8 C 0.125 3.875 9 C -0.125 4.125 10 C -0.064 4.064 11 C -0.089 4.089 12 C -0.104 4.104 13 C -0.109 4.109 14 C -0.106 4.106 15 C -0.081 4.081 16 C 0.117 3.883 17 N -0.424 5.424 18 C 0.085 3.915 19 C -0.151 4.151 20 C 0.178 3.822 21 H 0.049 0.951 22 N -0.718 5.718 23 C -0.236 4.236 24 H 0.068 0.932 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.160 10.138 -6.384 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.006 4.006 5 N -0.302 5.302 6 C 0.347 3.653 7 O -0.425 6.425 8 C -0.028 4.028 9 C -0.145 4.145 10 C -0.090 4.090 11 C -0.091 4.091 12 C -0.122 4.122 13 C -0.127 4.127 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.005 4.005 17 N -0.136 5.136 18 C -0.037 4.037 19 C -0.192 4.192 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.367 4.367 24 H 0.086 0.914 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.141 0.859 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.347 9.710 -6.191 20.821 hybrid contribution 0.373 -0.307 0.318 0.578 sum 17.720 9.403 -5.874 20.902 Atomic orbital electron populations 1.21665 0.94185 1.03216 1.00400 1.21701 0.96502 0.98786 0.95770 0.91685 1.21750 0.78321 1.01826 0.98708 1.48034 1.06922 1.57164 1.18118 1.17914 0.84936 0.78937 0.83486 1.90745 1.73891 1.46626 1.31275 1.21461 0.94926 0.93257 0.93192 1.21705 0.93735 0.99819 0.99242 1.21434 0.94942 0.96369 0.96282 1.18961 0.94890 0.97248 0.98029 1.20972 0.93213 0.98915 0.99127 1.20996 1.00267 0.95397 0.95999 1.20950 0.93147 0.99300 0.99236 1.20992 0.95367 0.96596 0.97009 1.19062 0.88605 0.96046 0.96805 1.68120 1.11891 1.18450 1.15185 1.22775 1.00641 0.98267 0.81971 1.22564 1.00112 0.98440 0.98118 1.20227 0.91068 0.87314 0.94631 0.93346 1.42451 1.78957 1.07722 1.06884 1.19172 1.37115 0.93898 0.86553 0.91381 1.24685 1.02390 0.97146 0.96513 1.69641 1.51765 1.13036 1.23641 0.86323 0.77712 0.79232 0.83222 1.21425 1.21834 1.21412 0.91002 0.92811 0.93771 0.89722 0.90311 0.83377 0.83773 0.85168 0.85458 0.85034 0.84007 0.85933 0.89880 0.90955 0.93870 0.78111 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.05 37.16 0.34 -1.92 16 2 C -0.11 -1.84 2.67 -90.50 -0.24 -2.08 16 3 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 2.07 5.42 -3.71 -0.02 2.05 16 5 N -0.57 -10.20 2.97 -173.72 -0.52 -10.72 16 6 C 0.56 9.84 7.61 -12.13 -0.09 9.75 16 7 O -0.55 -10.51 15.91 5.37 0.09 -10.42 16 8 C 0.12 1.89 6.45 -82.95 -0.54 1.35 16 9 C -0.12 -1.51 9.53 -39.44 -0.38 -1.88 16 10 C -0.06 -0.63 9.88 -39.25 -0.39 -1.01 16 11 C -0.09 -0.96 5.75 -106.72 -0.61 -1.58 16 12 C -0.10 -0.84 9.77 -39.52 -0.39 -1.23 16 13 C -0.11 -0.82 9.96 -39.89 -0.40 -1.21 16 14 C -0.11 -0.91 9.94 -39.94 -0.40 -1.31 16 15 C -0.08 -0.91 9.99 -39.41 -0.39 -1.30 16 16 C 0.12 1.52 6.61 -84.85 -0.56 0.96 16 17 N -0.42 -6.39 6.32 -7.54 -0.05 -6.44 16 18 C 0.09 1.53 5.71 -3.71 -0.02 1.51 16 19 C -0.15 -2.71 5.78 -26.61 -0.15 -2.86 16 20 C 0.18 3.47 2.53 -67.89 -0.17 3.29 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.99 3.64 -53.39 -0.19 -17.19 16 23 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 27 Si 0.90 22.04 29.55 -169.99 -5.02 17.01 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 35 H 0.08 1.55 6.64 -51.93 -0.34 1.20 16 36 H 0.15 1.62 7.77 -52.49 -0.41 1.22 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.12 2.07 4.01 -78.45 -0.31 1.76 16 43 H 0.08 1.75 7.74 -51.93 -0.40 1.35 16 44 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.38 9.74 5.93 -40.82 -0.24 9.50 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -31.43 376.69 -10.61 -42.04 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.66 Total: 11.10 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.66 Total: -4.33 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.03 Total: -61.08 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.43 -10.61 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036272746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.618 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds