Wall clock time and date at job start Tue Mar 31 2020 22:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49920 * 2 1 4 4 C 1.53192 * 109.49426 * 239.93866 * 2 1 3 5 5 N 1.46936 * 108.77396 * 185.40765 * 4 2 1 6 6 C 1.34766 * 120.63234 * 233.58255 * 5 4 2 7 7 O 1.21500 * 120.00075 * 7.81499 * 6 5 4 8 8 C 1.48280 * 120.00015 * 187.81458 * 6 5 4 9 9 C 1.40280 * 119.23787 * 189.82533 * 8 6 5 10 10 C 1.36509 * 119.81345 * 179.97438 * 9 8 6 11 11 C 1.40755 * 118.24429 * 0.04245 * 10 9 8 12 12 C 1.40415 * 121.28217 * 180.02562 * 11 10 9 13 13 C 1.36130 * 119.65043 * 179.97438 * 12 11 10 14 14 C 1.39435 * 120.91875 * 0.02912 * 13 12 11 15 15 C 1.35996 * 121.08163 * 359.97153 * 14 13 12 16 16 C 1.40830 * 119.73673 * 0.02562 * 15 14 13 17 17 N 1.31872 * 119.23817 * 9.88170 * 8 6 5 18 18 C 1.46926 * 118.73229 * 53.86295 * 5 4 2 19 19 C 1.53623 * 108.54672 * 306.08994 * 18 5 4 20 20 C 1.53035 * 109.50318 * 120.09979 * 2 1 3 21 21 H 1.09001 * 109.46157 * 61.30157 * 20 2 1 22 22 N 1.46502 * 109.45857 * 301.33677 * 20 2 1 23 23 C 1.36940 * 120.00130 * 154.99919 * 22 20 2 24 24 H 1.07999 * 119.99808 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99789 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99691 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 120.00293 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47138 * 90.00205 * 27 25 23 29 29 H 1.48495 * 109.47093 * 209.99752 * 27 25 23 30 30 H 1.48499 * 109.47112 * 330.00256 * 27 25 23 31 31 H 1.09001 * 109.47224 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46924 * 300.06286 * 1 2 3 33 33 H 1.08998 * 109.47296 * 60.05955 * 1 2 3 34 34 H 1.09002 * 109.58891 * 65.62889 * 4 2 1 35 35 H 1.08999 * 109.70742 * 305.26811 * 4 2 1 36 36 H 1.07995 * 120.09341 * 0.02562 * 9 8 6 37 37 H 1.07993 * 120.87569 * 180.02562 * 10 9 8 38 38 H 1.08002 * 120.17720 * 359.95871 * 12 11 10 39 39 H 1.08006 * 119.54400 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.46100 * 179.97438 * 14 13 12 41 41 H 1.07996 * 120.13418 * 179.97438 * 15 14 13 42 42 H 1.08999 * 109.58696 * 65.92612 * 18 5 4 43 43 H 1.08998 * 109.58506 * 186.34700 * 18 5 4 44 44 H 1.09003 * 109.63067 * 294.87002 * 19 18 5 45 45 H 1.08995 * 109.46033 * 174.74689 * 19 18 5 46 46 H 0.97000 * 119.99864 * 335.00018 * 22 20 2 47 47 H 0.97001 * 119.99883 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 3.5046 -0.8286 -1.1700 6 6 4.2810 -0.3857 -2.1786 7 8 3.7859 0.2328 -3.0998 8 6 5.7394 -0.6531 -2.1640 9 6 6.5625 -0.0144 -3.1034 10 6 7.9068 -0.2517 -3.1003 11 6 8.4238 -1.1423 -2.1408 12 6 9.7964 -1.4321 -2.0798 13 6 10.2606 -2.2983 -1.1377 14 6 9.3915 -2.9038 -0.2309 15 6 8.0562 -2.6473 -0.2598 16 6 7.5365 -1.7570 -1.2192 17 7 6.2325 -1.4867 -1.2691 18 6 4.1050 -1.4317 0.0277 19 6 3.5709 -0.6954 1.2657 20 6 2.0409 -0.7234 1.2480 21 1 1.6969 -1.7577 1.2346 22 7 1.5267 -0.0537 2.4452 23 6 1.3966 -0.7503 3.6170 24 1 1.6728 -1.7936 3.6584 25 6 0.9089 -0.1158 4.7512 26 7 0.7834 -0.7855 5.8773 27 14 0.4305 1.6885 4.6793 28 1 -1.0006 1.8065 4.3008 29 1 0.6432 2.3104 6.0108 30 1 1.2686 2.3829 3.6690 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 1.7637 -0.1572 -2.1390 35 1 1.6053 -1.7211 -1.3012 36 1 6.1340 0.6637 -3.8265 37 1 8.5564 0.2310 -3.8153 38 1 10.4802 -0.9705 -2.7767 39 1 11.3167 -2.5196 -1.0921 40 1 9.7852 -3.5876 0.5065 41 1 7.3969 -3.1251 0.4497 42 1 3.8338 -2.4861 0.0810 43 1 5.1896 -1.3332 -0.0181 44 1 3.9160 0.3385 1.2540 45 1 3.9336 -1.1898 2.1668 46 1 1.2783 0.8832 2.4079 47 1 0.4430 -0.3420 6.6699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036272747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:38 Heat of formation + Delta-G solvation = 34.453909 kcal Electronic energy + Delta-G solvation = -29236.136365 eV Core-core repulsion = 25383.862627 eV Total energy + Delta-G solvation = -3852.273738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.27240 -40.97981 -39.20222 -37.88845 -36.38230 -34.88370 -34.22894 -33.22296 -31.81905 -31.46460 -31.00569 -27.95879 -27.04993 -25.72623 -24.64120 -24.05062 -23.16917 -22.95773 -21.76161 -20.92058 -19.52205 -19.04923 -18.71422 -17.99447 -17.21050 -16.85072 -16.59212 -16.33794 -16.00600 -15.65348 -15.45197 -15.35540 -15.11147 -14.92121 -14.88913 -14.58238 -14.32106 -14.19816 -14.07259 -13.70881 -13.46289 -13.12540 -12.96114 -12.83790 -12.69020 -12.48903 -12.47178 -12.39751 -12.14006 -12.01042 -11.90486 -11.78875 -11.59594 -11.43664 -11.20777 -10.99895 -10.09482 -9.92068 -9.66825 -9.30383 -9.20190 -8.01126 -5.33037 -0.87352 -0.34782 0.90160 1.34840 1.36650 1.38373 1.45504 1.82765 2.16513 2.48029 2.84201 3.05247 3.30372 3.46756 3.53440 3.58771 3.75446 3.82345 3.83925 3.98112 4.07597 4.15043 4.25534 4.32442 4.34316 4.38198 4.45309 4.50068 4.68147 4.69953 4.76652 4.80271 4.86728 4.90044 4.98206 5.01360 5.06929 5.11772 5.19186 5.26256 5.35586 5.39494 5.44095 5.48299 5.51719 5.66263 5.79037 5.88163 6.23007 6.25319 6.53487 6.95920 7.08571 7.85091 8.04639 9.20595 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.003054 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.456517 B = 9166.875777 C =10566.080306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 H 0.061 0.939 4 C 0.122 3.878 5 N -0.586 5.586 6 C 0.563 3.437 7 O -0.565 6.565 8 C 0.098 3.902 9 C -0.141 4.141 10 C -0.043 4.043 11 C -0.100 4.100 12 C -0.100 4.100 13 C -0.105 4.105 14 C -0.093 4.093 15 C -0.112 4.112 16 C 0.093 3.907 17 N -0.448 5.448 18 C 0.085 3.915 19 C -0.141 4.141 20 C 0.182 3.818 21 H 0.048 0.952 22 N -0.747 5.747 23 C -0.219 4.219 24 H 0.059 0.941 25 C -0.062 4.062 26 N -0.984 5.984 27 Si 0.948 3.052 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.259 1.259 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.154 0.846 37 H 0.186 0.814 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.069 0.931 43 H 0.150 0.850 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.362 0.638 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.259 -1.698 -21.657 30.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 H 0.080 0.920 4 C -0.001 4.001 5 N -0.315 5.315 6 C 0.350 3.650 7 O -0.444 6.444 8 C -0.054 4.054 9 C -0.161 4.161 10 C -0.068 4.068 11 C -0.102 4.102 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.130 4.130 16 C -0.029 4.029 17 N -0.160 5.160 18 C -0.038 4.038 19 C -0.182 4.182 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.389 5.389 23 C -0.350 4.350 24 H 0.077 0.923 25 C -0.253 4.253 26 N -0.635 5.635 27 Si 0.777 3.223 28 H -0.204 1.204 29 H -0.224 1.224 30 H -0.184 1.184 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.172 0.828 37 H 0.203 0.797 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.154 0.846 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.195 0.805 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.463 -2.011 -21.356 29.645 hybrid contribution -0.460 1.302 0.455 1.454 sum 20.002 -0.709 -20.901 28.939 Atomic orbital electron populations 1.21635 0.93277 1.02454 1.01765 1.21647 0.97178 0.99337 0.94075 0.92011 1.21758 0.78414 1.01622 0.98292 1.48096 1.07037 1.58284 1.18122 1.18293 0.85873 0.78680 0.82115 1.90719 1.74703 1.41898 1.37055 1.21252 0.93840 0.96063 0.94223 1.21797 0.94518 1.00707 0.99124 1.21897 0.94608 0.93979 0.96356 1.19288 0.96144 0.98143 0.96628 1.21402 0.92639 0.98107 0.99670 1.21471 1.01825 0.95180 0.93748 1.21354 0.92225 0.98802 0.98913 1.21085 0.96968 0.97285 0.97709 1.19409 0.88498 0.97983 0.97053 1.67742 1.14332 1.14390 1.19545 1.23124 1.03318 0.96082 0.81268 1.22550 0.98116 0.99868 0.97644 1.20419 0.91670 0.95461 0.85004 0.93432 1.42786 1.78534 1.10033 1.07580 1.19005 1.33832 0.94621 0.87577 0.92253 1.25386 1.02651 1.01962 0.95338 1.69868 1.54481 1.37655 1.01490 0.85505 0.78637 0.81474 0.76723 1.20399 1.22447 1.18415 0.92236 0.93545 0.90909 0.88804 0.89783 0.82842 0.79685 0.81721 0.81990 0.82588 0.84566 0.91260 0.83401 0.93654 0.92211 0.80482 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.02 71.98 0.65 -3.36 16 2 C -0.10 -3.29 2.46 -10.72 -0.03 -3.31 16 3 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.12 3.49 5.72 86.36 0.49 3.99 16 5 N -0.59 -17.71 2.97 -820.97 -2.43 -20.15 16 6 C 0.56 17.37 7.65 86.92 0.67 18.03 16 7 O -0.56 -19.40 15.75 -3.72 -0.06 -19.46 16 8 C 0.10 2.59 6.59 42.31 0.28 2.87 16 9 C -0.14 -2.89 9.53 22.36 0.21 -2.68 16 10 C -0.04 -0.62 9.88 22.48 0.22 -0.40 16 11 C -0.10 -1.65 5.75 -21.22 -0.12 -1.77 16 12 C -0.10 -0.99 9.77 22.31 0.22 -0.77 16 13 C -0.10 -0.90 9.95 22.07 0.22 -0.68 16 14 C -0.09 -1.09 9.94 22.04 0.22 -0.87 16 15 C -0.11 -2.01 9.99 22.38 0.22 -1.79 16 16 C 0.09 2.03 6.61 40.47 0.27 2.29 16 17 N -0.45 -11.58 6.05 -177.76 -1.08 -12.65 16 18 C 0.08 2.55 5.90 86.51 0.51 3.06 16 19 C -0.14 -5.08 5.67 30.82 0.17 -4.91 16 20 C 0.18 7.03 2.19 45.02 0.10 7.13 16 21 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 22 N -0.75 -35.09 4.22 -322.82 -1.36 -36.45 16 23 C -0.22 -12.46 10.41 84.03 0.87 -11.58 16 24 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 25 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 26 N -0.98 -63.40 13.97 21.65 0.30 -63.10 16 27 Si 0.95 46.44 27.74 68.60 1.90 48.35 16 28 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 29 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 30 H -0.26 -11.73 6.52 99.48 0.65 -11.08 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.58 7.36 -2.39 -0.02 1.57 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 2.67 7.00 -2.39 -0.02 2.65 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.15 2.92 7.64 -2.91 -0.02 2.90 16 37 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 41 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.15 4.37 4.02 -68.95 -0.28 4.09 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.36 16.72 5.37 -92.71 -0.50 16.23 16 47 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -75.17 377.08 3.09 -72.09 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.16 Total: 29.33 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.65 Total: 2.03 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -4.57 Total: -132.34 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.35 kcal Total: -75.17 3.09 -72.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036272747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.541 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds