Wall clock time and date at job start Tue Mar 31 2020 22:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.49608 * 2 1 4 4 C 1.53188 * 109.49604 * 239.93088 * 2 1 3 5 5 N 1.46933 * 108.77586 * 185.41294 * 4 2 1 6 6 C 1.34775 * 120.63177 * 233.63706 * 5 4 2 7 7 O 1.21601 * 119.99672 * 355.76259 * 6 5 4 8 8 C 1.47449 * 120.00137 * 175.76840 * 6 5 4 9 9 C 1.38862 * 120.45935 * 54.71419 * 8 6 5 10 10 C 1.38902 * 120.67489 * 179.77028 * 9 8 6 11 11 C 1.36372 * 121.26994 * 0.51906 * 10 9 8 12 12 C 1.40400 * 119.99023 * 359.74612 * 11 10 9 13 13 C 1.40464 * 121.96297 * 179.97438 * 12 11 10 14 14 N 1.31280 * 119.88483 * 180.02562 * 13 12 11 15 15 C 1.32546 * 122.73615 * 359.97438 * 14 13 12 16 16 C 1.36333 * 121.81888 * 0.02562 * 15 14 13 17 17 C 1.40292 * 118.70218 * 359.97438 * 16 15 14 18 18 C 1.46921 * 118.73570 * 53.61107 * 5 4 2 19 19 C 1.53188 * 108.77847 * 306.39383 * 18 5 4 20 20 C 1.53041 * 109.49391 * 120.06569 * 2 1 3 21 21 H 1.08999 * 109.43629 * 61.27864 * 20 2 1 22 22 N 1.46500 * 109.48825 * 301.31766 * 20 2 1 23 23 C 1.36935 * 120.00102 * 154.91267 * 22 20 2 24 24 H 1.07997 * 120.00162 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99962 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00418 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00138 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47438 * 59.99884 * 27 25 23 29 29 H 1.48497 * 109.47274 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47075 * 300.00410 * 27 25 23 31 31 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47322 * 300.06291 * 1 2 3 33 33 H 1.09000 * 109.47531 * 60.06553 * 1 2 3 34 34 H 1.09002 * 109.58261 * 65.63025 * 4 2 1 35 35 H 1.09000 * 109.70883 * 305.27679 * 4 2 1 36 36 H 1.08001 * 119.66139 * 0.02562 * 9 8 6 37 37 H 1.07994 * 119.36452 * 180.23962 * 10 9 8 38 38 H 1.08003 * 120.00915 * 179.77101 * 11 10 9 39 39 H 1.08002 * 120.05263 * 359.97438 * 13 12 11 40 40 H 1.07993 * 119.09269 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.65438 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.58767 * 186.60264 * 18 5 4 43 43 H 1.09008 * 109.58704 * 66.18169 * 18 5 4 44 44 H 1.09004 * 109.49887 * 174.58456 * 19 18 5 45 45 H 1.09001 * 109.49955 * 294.65254 * 19 18 5 46 46 H 0.96998 * 119.99728 * 334.92136 * 22 20 2 47 47 H 0.96994 * 120.00592 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 3.5046 -0.8289 -1.1698 6 6 4.2811 -0.3851 -2.1779 7 8 3.7709 0.0373 -3.1977 8 6 5.7493 -0.4117 -2.0444 9 6 6.4062 -1.5938 -1.7290 10 6 7.7894 -1.6250 -1.6068 11 6 8.5410 -0.5005 -1.7812 12 6 7.9184 0.7179 -2.0959 13 6 8.6520 1.9010 -2.2839 14 7 8.0277 3.0181 -2.5766 15 6 6.7107 3.0901 -2.7077 16 6 5.9113 1.9978 -2.5448 17 6 6.5076 0.7674 -2.2304 18 6 4.1052 -1.4267 0.0304 19 6 3.5708 -0.6955 1.2658 20 6 2.0407 -0.7228 1.2486 21 1 1.6961 -1.7568 1.2355 22 7 1.5271 -0.0525 2.4457 23 6 1.3955 -0.7492 3.6172 24 1 1.6708 -1.7927 3.6588 25 6 0.9084 -0.1142 4.7514 26 7 0.5724 1.1574 4.7007 27 14 0.7296 -1.0644 6.3497 28 1 2.0571 -1.5807 6.7699 29 1 0.1917 -0.1657 7.4023 30 1 -0.2026 -2.2025 6.1474 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8905 34 1 1.7637 -0.1574 -2.1389 35 1 1.6053 -1.7212 -1.3010 36 1 5.8359 -2.4990 -1.5812 37 1 8.2788 -2.5567 -1.3645 38 1 9.6151 -0.5473 -1.6777 39 1 9.7276 1.8916 -2.1870 40 1 6.2583 4.0403 -2.9502 41 1 4.8401 2.0778 -2.6564 42 1 5.1895 -1.3247 -0.0141 43 1 3.8375 -2.4820 0.0861 44 1 3.9334 -1.1904 2.1668 45 1 3.9163 0.3383 1.2545 46 1 1.2801 0.8848 2.4085 47 1 0.2324 1.6012 5.4933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036292595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:47 Heat of formation + Delta-G solvation = 33.692686 kcal Electronic energy + Delta-G solvation = -29473.866316 eV Core-core repulsion = 25621.559569 eV Total energy + Delta-G solvation = -3852.306747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35273 -39.93313 -37.82894 -37.33272 -34.70291 -33.37888 -32.78819 -31.56512 -31.42322 -30.10405 -29.33104 -26.58846 -25.38354 -24.53640 -23.79973 -23.42332 -22.47806 -21.70731 -20.08812 -19.24900 -18.43509 -17.51953 -17.11870 -16.94583 -16.65038 -15.92267 -15.21647 -15.01873 -14.91421 -14.51838 -14.38410 -14.11767 -13.97858 -13.82530 -13.70787 -13.36244 -13.12423 -12.82581 -12.60553 -12.48259 -12.33123 -12.08085 -11.78398 -11.70336 -11.57056 -11.23399 -10.96398 -10.85030 -10.68630 -10.46647 -10.45595 -10.26450 -9.96001 -9.78773 -9.67928 -9.66871 -9.34795 -8.93527 -8.60099 -8.30757 -7.00718 -5.81054 -3.10142 -0.06244 0.60914 1.49415 2.46789 2.72836 3.03787 3.39770 3.44618 3.45805 3.81745 4.12424 4.21955 4.37976 4.44369 4.53961 4.57349 4.65467 4.80212 4.99355 5.06376 5.17920 5.19079 5.28145 5.30543 5.41689 5.47470 5.52662 5.54827 5.62701 5.64165 5.70422 5.72689 5.88913 5.94763 6.01918 6.06591 6.08949 6.25618 6.30707 6.33242 6.38501 6.45476 6.47706 6.56828 6.75613 6.86915 6.99877 7.36039 7.64106 7.73991 8.04555 8.36965 9.48383 10.05436 10.40291 11.41290 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.002976 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.065517 B = 9405.247718 C = 9797.503935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.595 5.595 6 C 0.560 3.440 7 O -0.538 6.538 8 C -0.112 4.112 9 C -0.064 4.064 10 C -0.125 4.125 11 C -0.068 4.068 12 C -0.116 4.116 13 C 0.144 3.856 14 N -0.487 5.487 15 C 0.079 3.921 16 C -0.144 4.144 17 C 0.009 3.991 18 C 0.097 3.903 19 C -0.151 4.151 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.143 0.857 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.696 -4.775 -15.130 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.327 5.327 6 C 0.348 3.652 7 O -0.417 6.417 8 C -0.115 4.115 9 C -0.084 4.084 10 C -0.143 4.143 11 C -0.088 4.088 12 C -0.118 4.118 13 C -0.027 4.027 14 N -0.194 5.194 15 C -0.063 4.063 16 C -0.163 4.163 17 C 0.004 3.996 18 C -0.025 4.025 19 C -0.193 4.193 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.182 0.818 40 H 0.173 0.827 41 H 0.161 0.839 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.701 -3.809 -15.646 21.804 hybrid contribution -0.655 -1.018 1.251 1.741 sum 14.046 -4.827 -14.395 20.683 Atomic orbital electron populations 1.21656 0.93951 1.01833 1.01913 1.21746 0.96691 1.00034 0.94535 0.91250 1.21772 0.77827 1.01122 0.99495 1.48121 1.07272 1.59445 1.17832 1.18089 0.86043 0.77691 0.83361 1.90791 1.74846 1.47379 1.28658 1.19859 0.93447 0.94199 1.04019 1.21478 0.94967 0.97150 0.94771 1.20841 0.93356 0.99150 1.00932 1.21133 1.00347 0.91234 0.96053 1.18982 0.93126 0.96236 1.03475 1.23219 1.00000 0.86591 0.92926 1.67427 1.11377 1.28702 1.11920 1.22248 0.88759 0.98756 0.96580 1.22044 1.02271 0.92430 0.99603 1.17836 0.92281 0.93157 0.96367 1.22132 0.98360 0.97343 0.84713 1.22691 1.00412 1.00424 0.95730 1.20189 0.90282 0.95707 0.86439 0.93375 1.42392 1.76519 1.11366 1.05742 1.19159 1.36187 0.94054 0.87749 0.91294 1.24724 1.01968 0.95998 0.98037 1.69643 1.49829 1.09470 1.29033 0.86304 0.77739 0.78732 0.83600 1.21316 1.21727 1.21290 0.92999 0.90675 0.93785 0.89263 0.91269 0.84684 0.84729 0.84471 0.81777 0.82700 0.83904 0.89955 0.91148 0.90489 0.92240 0.78208 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.02 37.16 0.34 -1.81 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.99 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.12 1.69 5.71 -3.71 -0.02 1.67 16 5 N -0.60 -8.20 2.97 -174.03 -0.52 -8.71 16 6 C 0.56 8.18 6.49 -12.51 -0.08 8.10 16 7 O -0.54 -9.30 15.30 5.28 0.08 -9.22 16 8 C -0.11 -1.41 4.89 -104.71 -0.51 -1.93 16 9 C -0.06 -0.61 7.42 -39.10 -0.29 -0.90 16 10 C -0.12 -0.95 9.92 -40.01 -0.40 -1.34 16 11 C -0.07 -0.52 9.79 -39.44 -0.39 -0.91 16 12 C -0.12 -1.22 5.74 -106.88 -0.61 -1.83 16 13 C 0.14 1.43 11.05 -16.95 -0.19 1.25 16 14 N -0.49 -5.87 10.30 -13.11 -0.14 -6.00 16 15 C 0.08 0.95 11.07 -17.93 -0.20 0.75 16 16 C -0.14 -1.89 9.30 -39.50 -0.37 -2.26 16 17 C 0.01 0.12 5.77 -106.55 -0.61 -0.49 16 18 C 0.10 1.23 5.55 -3.72 -0.02 1.21 16 19 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 20 C 0.18 3.38 2.19 -67.89 -0.15 3.23 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -16.95 4.41 -53.39 -0.24 -17.19 16 23 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 27 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.40 7.37 -51.93 -0.38 1.02 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.29 7.03 -51.93 -0.36 0.93 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.14 1.07 7.39 -52.49 -0.39 0.68 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.14 1.98 6.61 -52.49 -0.35 1.64 16 42 H 0.08 0.93 4.76 -51.93 -0.25 0.68 16 43 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.38 9.82 7.51 -40.82 -0.31 9.51 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -32.34 378.49 -10.18 -42.52 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.65 Total: 9.60 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -4.12 Total: -6.77 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.16 Total: -58.56 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.34 -10.18 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036292595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.210 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds