Wall clock time and date at job start Tue Mar 31 2020 22:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.49608 * 2 1 4 4 C 1.53188 * 109.49604 * 239.93088 * 2 1 3 5 5 N 1.46933 * 108.77586 * 185.41294 * 4 2 1 6 6 C 1.34775 * 120.63177 * 233.63706 * 5 4 2 7 7 O 1.21601 * 119.99672 * 355.76259 * 6 5 4 8 8 C 1.47449 * 120.00137 * 175.76840 * 6 5 4 9 9 C 1.38862 * 120.45935 * 54.71419 * 8 6 5 10 10 C 1.38902 * 120.67489 * 179.77028 * 9 8 6 11 11 C 1.36372 * 121.26994 * 0.51906 * 10 9 8 12 12 C 1.40400 * 119.99023 * 359.74612 * 11 10 9 13 13 C 1.40464 * 121.96297 * 179.97438 * 12 11 10 14 14 N 1.31280 * 119.88483 * 180.02562 * 13 12 11 15 15 C 1.32546 * 122.73615 * 359.97438 * 14 13 12 16 16 C 1.36333 * 121.81888 * 0.02562 * 15 14 13 17 17 C 1.40292 * 118.70218 * 359.97438 * 16 15 14 18 18 C 1.46921 * 118.73570 * 53.61107 * 5 4 2 19 19 C 1.53188 * 108.77847 * 306.39383 * 18 5 4 20 20 C 1.53041 * 109.49391 * 120.06569 * 2 1 3 21 21 H 1.08999 * 109.43629 * 61.27864 * 20 2 1 22 22 N 1.46500 * 109.48825 * 301.31766 * 20 2 1 23 23 C 1.36935 * 120.00102 * 154.91267 * 22 20 2 24 24 H 1.07997 * 120.00162 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99962 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00418 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00138 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47438 * 59.99884 * 27 25 23 29 29 H 1.48497 * 109.47274 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47075 * 300.00410 * 27 25 23 31 31 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47322 * 300.06291 * 1 2 3 33 33 H 1.09000 * 109.47531 * 60.06553 * 1 2 3 34 34 H 1.09002 * 109.58261 * 65.63025 * 4 2 1 35 35 H 1.09000 * 109.70883 * 305.27679 * 4 2 1 36 36 H 1.08001 * 119.66139 * 0.02562 * 9 8 6 37 37 H 1.07994 * 119.36452 * 180.23962 * 10 9 8 38 38 H 1.08003 * 120.00915 * 179.77101 * 11 10 9 39 39 H 1.08002 * 120.05263 * 359.97438 * 13 12 11 40 40 H 1.07993 * 119.09269 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.65438 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.58767 * 186.60264 * 18 5 4 43 43 H 1.09008 * 109.58704 * 66.18169 * 18 5 4 44 44 H 1.09004 * 109.49887 * 174.58456 * 19 18 5 45 45 H 1.09001 * 109.49955 * 294.65254 * 19 18 5 46 46 H 0.96998 * 119.99728 * 334.92136 * 22 20 2 47 47 H 0.96994 * 120.00592 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 3.5046 -0.8289 -1.1698 6 6 4.2811 -0.3851 -2.1779 7 8 3.7709 0.0373 -3.1977 8 6 5.7493 -0.4117 -2.0444 9 6 6.4062 -1.5938 -1.7290 10 6 7.7894 -1.6250 -1.6068 11 6 8.5410 -0.5005 -1.7812 12 6 7.9184 0.7179 -2.0959 13 6 8.6520 1.9010 -2.2839 14 7 8.0277 3.0181 -2.5766 15 6 6.7107 3.0901 -2.7077 16 6 5.9113 1.9978 -2.5448 17 6 6.5076 0.7674 -2.2304 18 6 4.1052 -1.4267 0.0304 19 6 3.5708 -0.6955 1.2658 20 6 2.0407 -0.7228 1.2486 21 1 1.6961 -1.7568 1.2355 22 7 1.5271 -0.0525 2.4457 23 6 1.3955 -0.7492 3.6172 24 1 1.6708 -1.7927 3.6588 25 6 0.9084 -0.1142 4.7514 26 7 0.5724 1.1574 4.7007 27 14 0.7296 -1.0644 6.3497 28 1 2.0571 -1.5807 6.7699 29 1 0.1917 -0.1657 7.4023 30 1 -0.2026 -2.2025 6.1474 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8905 34 1 1.7637 -0.1574 -2.1389 35 1 1.6053 -1.7212 -1.3010 36 1 5.8359 -2.4990 -1.5812 37 1 8.2788 -2.5567 -1.3645 38 1 9.6151 -0.5473 -1.6777 39 1 9.7276 1.8916 -2.1870 40 1 6.2583 4.0403 -2.9502 41 1 4.8401 2.0778 -2.6564 42 1 5.1895 -1.3247 -0.0141 43 1 3.8375 -2.4820 0.0861 44 1 3.9334 -1.1904 2.1668 45 1 3.9163 0.3383 1.2545 46 1 1.2801 0.8848 2.4085 47 1 0.2324 1.6012 5.4933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036292595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:46 Heat of formation + Delta-G solvation = 14.272886 kcal Electronic energy + Delta-G solvation = -29474.708422 eV Core-core repulsion = 25621.559569 eV Total energy + Delta-G solvation = -3853.148853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.22537 -40.99424 -39.09411 -38.17062 -36.22334 -34.62348 -33.92534 -33.08570 -32.24563 -31.16938 -30.76665 -27.77115 -26.85920 -25.54704 -24.72927 -24.58442 -23.61103 -23.11459 -21.33323 -20.42623 -19.22740 -19.06388 -18.41108 -17.79858 -17.66890 -16.92864 -16.76032 -16.17259 -15.77917 -15.75362 -15.55407 -15.36240 -15.21607 -14.96261 -14.77950 -14.71062 -14.30328 -13.98840 -13.77381 -13.60665 -13.29752 -13.13662 -12.95965 -12.86102 -12.80324 -12.71609 -12.50100 -12.47044 -12.20362 -12.07881 -11.87822 -11.67627 -11.29819 -11.18304 -11.03444 -10.84014 -10.54395 -10.09963 -9.77659 -9.12058 -8.96542 -7.90969 -5.19102 -0.82371 -0.16341 0.65591 1.46521 1.48850 1.50986 1.56922 1.84772 2.08892 2.58116 3.01569 3.25021 3.42319 3.45043 3.61850 3.72964 3.76579 3.78789 3.83352 3.91369 3.97911 4.05518 4.17870 4.25616 4.33648 4.34913 4.42063 4.53088 4.63757 4.70251 4.71080 4.74221 4.75987 4.79051 4.88245 4.93539 4.98827 5.05378 5.14856 5.25206 5.27531 5.33361 5.37125 5.46891 5.54705 5.58347 5.59205 5.77329 6.25783 6.30049 6.91716 6.95431 7.36372 8.12043 8.35405 9.32486 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.002976 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.065517 B = 9405.247718 C = 9797.503935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.047 0.953 4 C 0.127 3.873 5 N -0.596 5.596 6 C 0.561 3.439 7 O -0.575 6.575 8 C -0.152 4.152 9 C -0.049 4.049 10 C -0.125 4.125 11 C -0.049 4.049 12 C -0.133 4.133 13 C 0.156 3.844 14 N -0.514 5.514 15 C 0.075 3.925 16 C -0.175 4.175 17 C -0.010 4.010 18 C 0.108 3.892 19 C -0.142 4.142 20 C 0.180 3.820 21 H 0.054 0.946 22 N -0.732 5.732 23 C -0.232 4.232 24 H 0.080 0.920 25 C -0.076 4.076 26 N -0.972 5.972 27 Si 0.969 3.031 28 H -0.277 1.277 29 H -0.302 1.302 30 H -0.278 1.278 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.207 0.793 40 H 0.165 0.835 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.369 0.631 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.853 -8.060 -15.409 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.066 0.934 4 C 0.004 3.996 5 N -0.327 5.327 6 C 0.350 3.650 7 O -0.456 6.456 8 C -0.155 4.155 9 C -0.069 4.069 10 C -0.142 4.142 11 C -0.069 4.069 12 C -0.135 4.135 13 C -0.016 4.016 14 N -0.222 5.222 15 C -0.067 4.067 16 C -0.195 4.195 17 C -0.016 4.016 18 C -0.014 4.014 19 C -0.183 4.183 20 C 0.072 3.928 21 H 0.072 0.928 22 N -0.371 5.371 23 C -0.364 4.364 24 H 0.098 0.902 25 C -0.268 4.268 26 N -0.623 5.623 27 Si 0.798 3.202 28 H -0.203 1.203 29 H -0.228 1.228 30 H -0.204 1.204 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.172 0.828 37 H 0.193 0.807 38 H 0.199 0.801 39 H 0.223 0.777 40 H 0.182 0.818 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.201 0.799 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.883 -7.144 -15.951 25.005 hybrid contribution -1.524 -0.045 1.266 1.982 sum 16.359 -7.188 -14.685 23.128 Atomic orbital electron populations 1.21568 0.93721 1.02224 1.01184 1.21607 0.96840 0.98877 0.94706 0.93426 1.21659 0.78461 1.01767 0.97690 1.48164 1.07035 1.59450 1.18052 1.18486 0.87192 0.76520 0.82752 1.90755 1.75834 1.48829 1.30215 1.19751 0.92037 0.95650 1.08052 1.21855 0.96360 0.96392 0.92286 1.21310 0.92311 1.00791 0.99831 1.21668 1.02506 0.89675 0.93021 1.19297 0.92089 0.97933 1.04146 1.23964 1.01730 0.85714 0.90175 1.67502 1.11001 1.29998 1.13720 1.22408 0.89202 0.98898 0.96148 1.21939 1.01359 0.93834 1.02405 1.18088 0.93841 0.92927 0.96701 1.22148 0.99274 0.97886 0.82138 1.22477 0.98568 0.99622 0.97600 1.20422 0.91496 0.95524 0.85372 0.92831 1.42592 1.76918 1.10782 1.06790 1.19579 1.33886 0.94470 0.88455 0.90224 1.25501 1.03107 0.96875 1.01351 1.69818 1.51996 1.11191 1.29319 0.85280 0.77950 0.77345 0.79604 1.20318 1.22848 1.20406 0.91954 0.94091 0.91794 0.89877 0.89105 0.82773 0.80707 0.80137 0.77663 0.81820 0.86228 0.88022 0.88345 0.91177 0.94573 0.79935 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.02 71.98 0.65 -3.50 16 2 C -0.10 -3.28 2.46 -10.72 -0.03 -3.30 16 3 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.13 3.50 5.71 86.36 0.49 3.99 16 5 N -0.60 -15.97 2.97 -822.76 -2.45 -18.41 16 6 C 0.56 16.48 6.49 86.67 0.56 17.04 16 7 O -0.58 -20.74 15.30 -4.03 -0.06 -20.80 16 8 C -0.15 -3.69 4.89 -19.92 -0.10 -3.78 16 9 C -0.05 -0.77 7.42 22.58 0.17 -0.61 16 10 C -0.12 -1.24 9.92 21.99 0.22 -1.02 16 11 C -0.05 -0.52 9.79 22.36 0.22 -0.30 16 12 C -0.13 -2.47 5.74 -21.33 -0.12 -2.59 16 13 C 0.16 2.72 11.05 85.32 0.94 3.66 16 14 N -0.51 -12.15 10.30 -195.40 -2.01 -14.16 16 15 C 0.08 1.91 11.07 84.14 0.93 2.84 16 16 C -0.18 -4.97 9.30 22.32 0.21 -4.76 16 17 C -0.01 -0.25 5.77 -21.11 -0.12 -0.38 16 18 C 0.11 2.50 5.55 86.36 0.48 2.98 16 19 C -0.14 -4.57 5.66 30.67 0.17 -4.39 16 20 C 0.18 6.61 2.19 45.02 0.10 6.71 16 21 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 22 N -0.73 -35.32 4.41 -322.81 -1.42 -36.75 16 23 C -0.23 -12.27 9.93 84.03 0.83 -11.44 16 24 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 25 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 26 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 27 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 30 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.59 7.37 -2.39 -0.02 1.57 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 2.44 7.03 -2.39 -0.02 2.42 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.15 1.76 7.39 -2.91 -0.02 1.74 16 37 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 39 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.12 3.79 6.61 -2.91 -0.02 3.77 16 42 H 0.10 2.01 4.76 -2.39 -0.01 2.00 16 43 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.37 19.82 7.51 -92.71 -0.70 19.13 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -75.10 378.49 2.74 -72.36 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.30 Total: 32.10 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 6.08 Total: -2.67 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -5.60 Total: -128.07 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.10 2.74 -72.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036292595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.629 kcal (2) G-P(sol) polarization free energy of solvation -75.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds