Wall clock time and date at job start Tue Mar 31 2020 22:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52610 * 2 1 4 4 C 1.53197 * 109.49911 * 239.91855 * 2 1 3 5 5 N 1.46926 * 108.77688 * 185.41578 * 4 2 1 6 6 C 1.34769 * 120.62547 * 233.62777 * 5 4 2 7 7 O 1.21606 * 120.00619 * 355.77128 * 6 5 4 8 8 C 1.47460 * 119.99654 * 175.76519 * 6 5 4 9 9 C 1.38860 * 120.45510 * 54.72297 * 8 6 5 10 10 C 1.38904 * 120.67027 * 179.71475 * 9 8 6 11 11 C 1.36377 * 121.27432 * 0.57301 * 10 9 8 12 12 C 1.40403 * 119.98294 * 359.71187 * 11 10 9 13 13 C 1.40465 * 121.95385 * 180.02562 * 12 11 10 14 14 N 1.31272 * 119.87993 * 179.97438 * 13 12 11 15 15 C 1.32560 * 122.73885 * 0.02562 * 14 13 12 16 16 C 1.36324 * 121.81741 * 0.02562 * 15 14 13 17 17 C 1.40299 * 118.69898 * 359.97438 * 16 15 14 18 18 C 1.46924 * 118.73751 * 53.61197 * 5 4 2 19 19 C 1.53193 * 108.77314 * 306.38782 * 18 5 4 20 20 C 1.53039 * 109.31323 * 54.64022 * 19 18 5 21 21 H 1.09000 * 109.45645 * 178.62879 * 20 19 18 22 22 N 1.46498 * 109.46184 * 58.65574 * 20 19 18 23 23 C 1.36931 * 120.00133 * 84.99587 * 22 20 19 24 24 H 1.08005 * 120.00129 * 0.02562 * 23 22 20 25 25 C 1.38817 * 120.00097 * 180.02562 * 23 22 20 26 26 N 1.31622 * 119.99742 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99955 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.46797 * 180.02562 * 27 25 23 29 29 H 1.48504 * 109.47326 * 299.99584 * 27 25 23 30 30 H 1.48496 * 109.47236 * 60.00361 * 27 25 23 31 31 H 1.09007 * 109.46653 * 299.91857 * 1 2 3 32 32 H 1.08999 * 109.46951 * 59.91679 * 1 2 3 33 33 H 1.09002 * 109.46967 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.58331 * 65.62274 * 4 2 1 35 35 H 1.09009 * 109.58442 * 305.20525 * 4 2 1 36 36 H 1.07999 * 119.66918 * 0.02562 * 9 8 6 37 37 H 1.07997 * 119.36327 * 180.26581 * 10 9 8 38 38 H 1.07994 * 120.00547 * 179.74109 * 11 10 9 39 39 H 1.07996 * 120.05853 * 359.96085 * 13 12 11 40 40 H 1.07998 * 119.08979 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.65303 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.58339 * 186.60849 * 18 5 4 43 43 H 1.08992 * 109.70830 * 66.24883 * 18 5 4 44 44 H 1.09006 * 109.49904 * 294.68167 * 19 18 5 45 45 H 1.09002 * 109.49707 * 174.59227 * 19 18 5 46 46 H 0.96996 * 119.99531 * 265.00034 * 22 20 19 47 47 H 0.97002 * 119.99803 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5047 -0.8292 -1.1696 6 6 4.2811 -0.3857 -2.1779 7 8 3.7710 0.0364 -3.1979 8 6 5.7494 -0.4123 -2.0443 9 6 6.4061 -1.5943 -1.7286 10 6 7.7895 -1.6257 -1.6074 11 6 8.5412 -0.5013 -1.7822 12 6 7.9185 0.7171 -2.0968 13 6 8.6522 1.8999 -2.2861 14 7 8.0280 3.0168 -2.5797 15 6 6.7108 3.0891 -2.7094 16 6 5.9113 1.9974 -2.5442 17 6 6.5075 0.7672 -2.2288 18 6 4.1053 -1.4269 0.0307 19 6 3.5708 -0.6951 1.2660 20 6 2.0408 -0.7232 1.2483 21 1 1.6582 -0.2243 2.1388 22 7 1.5783 -2.1131 1.2308 23 6 1.4468 -2.8058 2.4047 24 1 1.6837 -2.3273 3.3435 25 6 1.0090 -4.1230 2.3880 26 7 0.7208 -4.7063 1.2438 27 14 0.8290 -5.0677 3.9894 28 1 0.3499 -6.4435 3.7013 29 1 2.1447 -5.1357 4.6747 30 1 -0.1502 -4.3754 4.8652 31 1 -0.3633 0.5126 0.8908 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7638 -0.1580 -2.1389 35 1 1.6052 -1.7217 -1.2980 36 1 5.8360 -2.4995 -1.5806 37 1 8.2789 -2.5575 -1.3653 38 1 9.6152 -0.5482 -1.6790 39 1 9.7278 1.8904 -2.1901 40 1 6.2585 4.0392 -2.9528 41 1 4.8399 2.0778 -2.6540 42 1 5.1896 -1.3247 -0.0137 43 1 3.8397 -2.4824 0.0879 44 1 3.9160 0.3388 1.2541 45 1 3.9334 -1.1898 2.1671 46 1 1.3652 -2.5427 0.3877 47 1 0.4152 -5.6269 1.2322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036292596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:51 Heat of formation + Delta-G solvation = 35.707604 kcal Electronic energy + Delta-G solvation = -29859.000535 eV Core-core repulsion = 26006.781162 eV Total energy + Delta-G solvation = -3852.219373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27717 -39.86638 -37.86565 -37.25264 -34.37042 -33.29095 -32.77717 -31.49247 -31.35599 -30.01368 -29.22122 -26.47200 -25.40604 -24.43060 -23.75936 -23.55063 -22.87417 -21.71058 -19.90581 -18.47782 -18.34284 -17.38945 -17.32807 -16.86234 -16.50469 -15.80104 -15.18041 -14.87444 -14.72532 -14.51431 -14.28249 -14.19694 -14.01684 -13.91248 -13.53832 -13.33921 -13.06463 -12.77458 -12.56412 -12.42490 -12.26160 -12.06488 -11.64249 -11.58864 -11.40122 -11.22729 -10.93780 -10.83642 -10.54802 -10.52221 -10.40899 -10.26063 -9.89987 -9.83669 -9.62033 -9.59041 -9.26818 -8.96767 -8.36769 -8.22215 -7.03091 -5.83832 -3.12492 0.00172 0.66883 1.54855 2.59116 2.85615 3.18368 3.38276 3.43828 3.44412 3.86345 4.19120 4.28259 4.46588 4.53065 4.54484 4.64490 4.72020 4.87987 5.11934 5.13802 5.26052 5.28092 5.34841 5.48273 5.49351 5.54663 5.57610 5.66466 5.69001 5.76042 5.77962 5.87050 5.99451 6.02177 6.05140 6.14398 6.17869 6.26989 6.34855 6.38079 6.44788 6.51365 6.57408 6.63344 6.70674 6.87193 6.94070 7.57241 7.63668 7.75893 8.21322 8.34640 9.46291 10.02415 10.37719 11.38427 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.003214 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.188117 B = 8709.414579 C = 9570.809013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.558 3.442 7 O -0.543 6.543 8 C -0.111 4.111 9 C -0.061 4.061 10 C -0.122 4.122 11 C -0.071 4.071 12 C -0.116 4.116 13 C 0.144 3.856 14 N -0.488 5.488 15 C 0.076 3.924 16 C -0.143 4.143 17 C 0.009 3.991 18 C 0.105 3.895 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.292 1.292 29 H -0.287 1.287 30 H -0.287 1.287 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.151 10.282 -5.937 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.345 3.655 7 O -0.422 6.422 8 C -0.114 4.114 9 C -0.081 4.081 10 C -0.140 4.140 11 C -0.091 4.091 12 C -0.118 4.118 13 C -0.028 4.028 14 N -0.196 5.196 15 C -0.067 4.067 16 C -0.163 4.163 17 C 0.003 3.997 18 C -0.017 4.017 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.214 1.214 30 H -0.213 1.213 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.163 11.268 -6.443 19.211 hybrid contribution -0.680 -1.674 0.895 2.017 sum 13.484 9.594 -5.547 17.453 Atomic orbital electron populations 1.21666 0.94074 1.03255 1.00501 1.21712 0.96606 0.98819 0.95691 0.91639 1.21714 0.78011 1.01865 0.98722 1.48082 1.07220 1.58808 1.17912 1.18073 0.85978 0.77957 0.83479 1.90781 1.74832 1.47964 1.28621 1.19892 0.93613 0.94079 1.03808 1.21571 0.94978 0.97432 0.94151 1.20879 0.93392 0.99156 1.00527 1.21118 1.00275 0.91257 0.96484 1.18972 0.93130 0.96202 1.03533 1.23194 0.99942 0.86624 0.93029 1.67416 1.11357 1.28753 1.12096 1.22212 0.88792 0.98693 0.97009 1.22035 1.02229 0.92428 0.99559 1.17840 0.92263 0.93158 0.96461 1.21978 0.97061 0.98980 0.83648 1.22523 1.00479 0.98628 0.97412 1.20214 0.90729 0.87395 0.94852 0.93069 1.42462 1.79002 1.07679 1.06929 1.19173 1.37421 0.93876 0.86544 0.91306 1.24701 1.02197 0.97173 0.96605 1.69637 1.51620 1.13109 1.23705 0.86314 0.77775 0.79215 0.83124 1.21792 1.21352 1.21346 0.92746 0.93719 0.90978 0.89674 0.90335 0.84411 0.84682 0.84535 0.81853 0.82848 0.83953 0.90713 0.89404 0.93383 0.90668 0.78105 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.05 37.16 0.34 -1.81 16 2 C -0.11 -1.73 2.67 -90.49 -0.24 -1.97 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.96 5.41 -3.71 -0.02 1.94 16 5 N -0.59 -9.36 2.97 -174.02 -0.52 -9.88 16 6 C 0.56 9.01 6.49 -12.51 -0.08 8.93 16 7 O -0.54 -10.16 15.30 5.27 0.08 -10.08 16 8 C -0.11 -1.53 4.89 -104.70 -0.51 -2.05 16 9 C -0.06 -0.71 7.42 -39.10 -0.29 -1.00 16 10 C -0.12 -1.09 9.92 -40.01 -0.40 -1.49 16 11 C -0.07 -0.61 9.79 -39.44 -0.39 -0.99 16 12 C -0.12 -1.27 5.74 -106.88 -0.61 -1.88 16 13 C 0.14 1.44 11.05 -16.95 -0.19 1.25 16 14 N -0.49 -5.81 10.30 -13.12 -0.14 -5.94 16 15 C 0.08 0.89 11.07 -17.93 -0.20 0.69 16 16 C -0.14 -1.88 9.30 -39.50 -0.37 -2.24 16 17 C 0.01 0.11 5.77 -106.55 -0.61 -0.50 16 18 C 0.11 1.63 5.29 -3.71 -0.02 1.61 16 19 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 20 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.02 3.64 -53.38 -0.19 -16.21 16 23 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 24 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 27 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 31 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 34 H 0.08 1.40 7.03 -51.93 -0.36 1.03 16 35 H 0.08 1.43 6.64 -51.92 -0.34 1.08 16 36 H 0.14 1.52 7.39 -52.49 -0.39 1.13 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.14 1.97 6.62 -52.49 -0.35 1.62 16 42 H 0.07 1.01 4.76 -51.93 -0.25 0.76 16 43 H 0.09 1.57 7.74 -51.93 -0.40 1.16 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.38 9.18 5.93 -40.82 -0.24 8.94 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -30.79 374.55 -10.08 -40.87 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.50 Total: 10.67 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -4.16 Total: -5.63 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.12 Total: -57.81 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.79 -10.08 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036292596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.578 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds