Wall clock time and date at job start Tue Mar 31 2020 22:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.52537 * 2 1 4 4 C 1.53187 * 109.50033 * 120.09050 * 2 1 3 5 5 N 1.46929 * 108.77927 * 174.58586 * 4 2 1 6 6 C 1.34775 * 120.63137 * 126.36571 * 5 4 2 7 7 O 1.21601 * 119.99908 * 354.31196 * 6 5 4 8 8 C 1.47445 * 120.00063 * 174.31280 * 6 5 4 9 9 C 1.38863 * 120.45858 * 305.90296 * 8 6 5 10 10 C 1.38904 * 120.67432 * 179.76374 * 9 8 6 11 11 C 1.36367 * 121.27451 * 0.52221 * 10 9 8 12 12 C 1.40397 * 119.98257 * 359.74090 * 11 10 9 13 13 C 1.40474 * 121.94779 * 180.02562 * 12 11 10 14 14 N 1.31279 * 119.88092 * 180.02562 * 13 12 11 15 15 C 1.32549 * 122.73102 * 359.97438 * 14 13 12 16 16 C 1.36330 * 121.82492 * 359.97438 * 15 14 13 17 17 C 1.40293 * 118.70313 * 0.02562 * 16 15 14 18 18 C 1.46920 * 118.73830 * 306.39125 * 5 4 2 19 19 C 1.53193 * 108.77870 * 53.60527 * 18 5 4 20 20 C 1.53045 * 109.31232 * 305.36929 * 19 18 5 21 21 H 1.09007 * 109.46222 * 181.38360 * 20 19 18 22 22 N 1.46502 * 109.45863 * 301.34261 * 20 19 18 23 23 C 1.36939 * 119.99654 * 275.00040 * 22 20 19 24 24 H 1.07999 * 120.00100 * 0.02562 * 23 22 20 25 25 C 1.38810 * 119.99946 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99782 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00154 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46944 * 90.00211 * 27 25 23 29 29 H 1.48501 * 109.47185 * 209.99675 * 27 25 23 30 30 H 1.48501 * 109.47189 * 330.00102 * 27 25 23 31 31 H 1.08997 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47280 * 300.07223 * 1 2 3 33 33 H 1.09002 * 109.47292 * 60.07678 * 1 2 3 34 34 H 1.08996 * 109.58560 * 54.79724 * 4 2 1 35 35 H 1.09001 * 109.70031 * 294.44051 * 4 2 1 36 36 H 1.07998 * 119.66378 * 0.02562 * 9 8 6 37 37 H 1.08006 * 119.36068 * 180.23723 * 10 9 8 38 38 H 1.08002 * 120.00866 * 179.76236 * 11 10 9 39 39 H 1.08000 * 120.06160 * 0.02562 * 13 12 11 40 40 H 1.08006 * 119.08818 * 179.97438 * 15 14 13 41 41 H 1.08000 * 120.65312 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.58542 * 293.82035 * 18 5 4 43 43 H 1.09003 * 109.58785 * 173.39242 * 18 5 4 44 44 H 1.08999 * 109.50248 * 185.41440 * 19 18 5 45 45 H 1.09002 * 109.52695 * 65.33132 * 19 18 5 46 46 H 0.96996 * 120.00181 * 94.99971 * 22 20 19 47 47 H 0.97000 * 120.00004 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7240 1.2494 5 7 3.5046 -0.8293 1.1694 6 6 4.2812 -0.3859 2.1777 7 8 3.7805 0.1998 3.1184 8 6 5.7379 -0.6109 2.1403 9 6 6.2482 -1.8908 1.9680 10 6 7.6197 -2.1073 1.9271 11 6 8.5033 -1.0778 2.0646 12 6 8.0317 0.2321 2.2462 13 6 8.9047 1.3230 2.3916 14 7 8.4194 2.5311 2.5598 15 6 7.1184 2.7817 2.6002 16 6 6.1911 1.7912 2.4678 17 6 6.6348 0.4729 2.2846 18 6 4.1053 -1.4267 -0.0310 19 6 3.5709 -0.6949 -1.2662 20 6 2.0408 -0.7229 -1.2485 21 1 1.6581 -0.2242 -2.1390 22 7 1.5783 -2.1129 -1.2311 23 6 1.4468 -2.8055 -2.4051 24 1 1.6844 -2.3271 -3.3438 25 6 1.0091 -4.1226 -2.3886 26 7 0.7200 -4.7057 -1.2446 27 14 0.8290 -5.0671 -3.9901 28 1 2.1062 -5.7564 -4.3046 29 1 -0.2552 -6.0726 -3.8526 30 1 0.4927 -4.1234 -5.0863 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 1.6053 -1.7217 1.2977 35 1 1.7637 -0.1603 2.1401 36 1 5.5719 -2.7259 1.8605 37 1 7.9935 -3.1111 1.7884 38 1 9.5656 -1.2699 2.0334 39 1 9.9732 1.1681 2.3650 40 1 6.7837 3.7987 2.7419 41 1 5.1355 2.0168 2.5032 42 1 3.8375 -2.4818 -0.0871 43 1 5.1896 -1.3246 0.0135 44 1 3.9334 -1.1894 -2.1673 45 1 3.9158 0.3390 -1.2548 46 1 1.3652 -2.5427 -0.3880 47 1 0.4145 -5.6263 -1.2330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036292598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:58 Heat of formation + Delta-G solvation = 33.800840 kcal Electronic energy + Delta-G solvation = -29840.245824 eV Core-core repulsion = 25987.943767 eV Total energy + Delta-G solvation = -3852.302057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.25934 -39.85901 -37.86668 -37.23141 -34.36136 -33.28249 -32.76507 -31.46382 -31.37175 -30.00735 -29.21751 -26.48137 -25.35752 -24.43697 -23.72966 -23.55936 -22.87761 -21.71328 -19.89859 -18.49066 -18.29071 -17.40674 -17.33584 -16.83825 -16.48968 -15.81319 -15.16898 -14.86846 -14.67760 -14.53475 -14.30376 -14.18475 -14.01261 -13.89291 -13.48105 -13.33996 -13.07773 -12.80525 -12.56823 -12.38789 -12.24084 -12.07795 -11.64871 -11.59457 -11.40995 -11.22349 -10.95162 -10.83290 -10.54278 -10.51971 -10.40367 -10.22968 -9.89453 -9.83348 -9.61896 -9.58981 -9.28135 -8.97725 -8.35946 -8.22190 -7.03112 -5.84249 -3.12769 0.00705 0.67997 1.55042 2.59446 2.88187 3.18017 3.37538 3.44058 3.45128 3.87194 4.19778 4.28834 4.47537 4.52905 4.55846 4.65746 4.73092 4.89135 5.12609 5.14876 5.26034 5.29058 5.35427 5.48552 5.50794 5.55153 5.58696 5.66926 5.69930 5.76415 5.78612 5.87540 6.00338 6.02324 6.06597 6.14810 6.18426 6.27509 6.34638 6.38893 6.45412 6.52252 6.57958 6.63685 6.71381 6.87447 6.94385 7.57535 7.64105 7.76473 8.21420 8.34290 9.46078 10.02138 10.37465 11.38102 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.003236 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.712086 B = 8650.811833 C = 9547.912080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.118 3.882 5 N -0.591 5.591 6 C 0.558 3.442 7 O -0.543 6.543 8 C -0.112 4.112 9 C -0.059 4.059 10 C -0.121 4.121 11 C -0.071 4.071 12 C -0.116 4.116 13 C 0.144 3.856 14 N -0.489 5.489 15 C 0.075 3.925 16 C -0.143 4.143 17 C 0.008 3.992 18 C 0.110 3.890 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.043 9.140 6.518 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.346 3.654 7 O -0.422 6.422 8 C -0.115 4.115 9 C -0.079 4.079 10 C -0.139 4.139 11 C -0.091 4.091 12 C -0.119 4.119 13 C -0.028 4.028 14 N -0.196 5.196 15 C -0.067 4.067 16 C -0.163 4.163 17 C 0.002 3.998 18 C -0.012 4.012 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.158 10.183 6.931 18.767 hybrid contribution -0.765 -1.622 -0.845 1.983 sum 13.393 8.561 6.086 17.021 Atomic orbital electron populations 1.21664 0.94109 1.03226 1.00502 1.21699 0.96582 0.98865 0.95644 0.91600 1.21714 0.78011 1.01784 0.98856 1.48091 1.07213 1.59077 1.17760 1.18080 0.85797 0.78852 0.82683 1.90774 1.74829 1.42046 1.34584 1.19886 0.93272 0.93927 1.04406 1.21554 0.96094 0.96071 0.94150 1.20881 0.92640 0.99964 1.00437 1.21118 1.00335 0.91062 0.96616 1.18977 0.93222 0.95831 1.03832 1.23198 0.99655 0.86794 0.93163 1.67416 1.16259 1.23703 1.12248 1.22212 0.87839 0.99778 0.96910 1.22046 1.02173 0.92275 0.99757 1.17859 0.92049 0.93326 0.96549 1.21866 0.96746 0.98996 0.83573 1.22522 1.00492 0.98646 0.97373 1.20221 0.90706 0.87386 0.94881 0.93053 1.42473 1.78992 1.07687 1.06932 1.19217 1.37236 0.93869 0.86565 0.91257 1.24697 1.02225 0.97182 0.96608 1.69645 1.51728 1.13029 1.23669 0.86241 0.77291 0.79828 0.83110 1.21819 1.21875 1.20839 0.91002 0.93722 0.92761 0.90365 0.89625 0.84468 0.84685 0.84542 0.81862 0.82862 0.83903 0.89507 0.91046 0.90654 0.93371 0.78117 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.05 37.16 0.34 -1.81 16 2 C -0.11 -1.73 2.67 -90.50 -0.24 -1.97 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.94 5.43 -3.71 -0.02 1.92 16 5 N -0.59 -9.34 2.97 -174.03 -0.52 -9.86 16 6 C 0.56 9.00 6.50 -12.51 -0.08 8.92 16 7 O -0.54 -10.11 15.21 5.28 0.08 -10.03 16 8 C -0.11 -1.55 4.62 -104.71 -0.48 -2.03 16 9 C -0.06 -0.68 7.77 -39.10 -0.30 -0.99 16 10 C -0.12 -1.10 9.92 -40.01 -0.40 -1.50 16 11 C -0.07 -0.61 9.78 -39.44 -0.39 -1.00 16 12 C -0.12 -1.28 5.74 -106.88 -0.61 -1.89 16 13 C 0.14 1.45 11.05 -16.95 -0.19 1.26 16 14 N -0.49 -5.84 10.30 -13.11 -0.14 -5.97 16 15 C 0.08 0.89 11.07 -17.93 -0.20 0.69 16 16 C -0.14 -1.88 9.29 -39.50 -0.37 -2.25 16 17 C 0.01 0.11 5.77 -106.55 -0.61 -0.51 16 18 C 0.11 1.71 5.32 -3.71 -0.02 1.69 16 19 C -0.15 -2.43 5.78 -26.61 -0.15 -2.58 16 20 C 0.18 3.24 2.53 -67.88 -0.17 3.06 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -15.98 3.64 -53.38 -0.19 -16.18 16 23 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.40 13.06 55.49 0.72 -25.68 16 27 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.40 6.64 -51.93 -0.34 1.06 16 35 H 0.09 1.41 6.99 -51.93 -0.36 1.04 16 36 H 0.14 1.55 7.75 -52.49 -0.41 1.14 16 37 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 41 H 0.14 1.99 6.57 -52.49 -0.34 1.64 16 42 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 43 H 0.07 0.98 5.39 -51.93 -0.28 0.70 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.38 9.13 5.92 -40.82 -0.24 8.89 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -30.63 375.48 -10.10 -40.73 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.55 Total: 10.58 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -4.15 Total: -5.58 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.12 Total: -57.69 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.63 -10.10 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036292598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.532 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds