Wall clock time and date at job start Tue Mar 31 2020 22:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.52537 * 2 1 4 4 C 1.53187 * 109.50033 * 120.09050 * 2 1 3 5 5 N 1.46929 * 108.77927 * 174.58586 * 4 2 1 6 6 C 1.34775 * 120.63137 * 126.36571 * 5 4 2 7 7 O 1.21601 * 119.99908 * 354.31196 * 6 5 4 8 8 C 1.47445 * 120.00063 * 174.31280 * 6 5 4 9 9 C 1.38863 * 120.45858 * 305.90296 * 8 6 5 10 10 C 1.38904 * 120.67432 * 179.76374 * 9 8 6 11 11 C 1.36367 * 121.27451 * 0.52221 * 10 9 8 12 12 C 1.40397 * 119.98257 * 359.74090 * 11 10 9 13 13 C 1.40474 * 121.94779 * 180.02562 * 12 11 10 14 14 N 1.31279 * 119.88092 * 180.02562 * 13 12 11 15 15 C 1.32549 * 122.73102 * 359.97438 * 14 13 12 16 16 C 1.36330 * 121.82492 * 359.97438 * 15 14 13 17 17 C 1.40293 * 118.70313 * 0.02562 * 16 15 14 18 18 C 1.46920 * 118.73830 * 306.39125 * 5 4 2 19 19 C 1.53193 * 108.77870 * 53.60527 * 18 5 4 20 20 C 1.53045 * 109.31232 * 305.36929 * 19 18 5 21 21 H 1.09007 * 109.46222 * 181.38360 * 20 19 18 22 22 N 1.46502 * 109.45863 * 301.34261 * 20 19 18 23 23 C 1.36939 * 119.99654 * 275.00040 * 22 20 19 24 24 H 1.07999 * 120.00100 * 0.02562 * 23 22 20 25 25 C 1.38810 * 119.99946 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99782 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00154 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46944 * 90.00211 * 27 25 23 29 29 H 1.48501 * 109.47185 * 209.99675 * 27 25 23 30 30 H 1.48501 * 109.47189 * 330.00102 * 27 25 23 31 31 H 1.08997 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47280 * 300.07223 * 1 2 3 33 33 H 1.09002 * 109.47292 * 60.07678 * 1 2 3 34 34 H 1.08996 * 109.58560 * 54.79724 * 4 2 1 35 35 H 1.09001 * 109.70031 * 294.44051 * 4 2 1 36 36 H 1.07998 * 119.66378 * 0.02562 * 9 8 6 37 37 H 1.08006 * 119.36068 * 180.23723 * 10 9 8 38 38 H 1.08002 * 120.00866 * 179.76236 * 11 10 9 39 39 H 1.08000 * 120.06160 * 0.02562 * 13 12 11 40 40 H 1.08006 * 119.08818 * 179.97438 * 15 14 13 41 41 H 1.08000 * 120.65312 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.58542 * 293.82035 * 18 5 4 43 43 H 1.09003 * 109.58785 * 173.39242 * 18 5 4 44 44 H 1.08999 * 109.50248 * 185.41440 * 19 18 5 45 45 H 1.09002 * 109.52695 * 65.33132 * 19 18 5 46 46 H 0.96996 * 120.00181 * 94.99971 * 22 20 19 47 47 H 0.97000 * 120.00004 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7240 1.2494 5 7 3.5046 -0.8293 1.1694 6 6 4.2812 -0.3859 2.1777 7 8 3.7805 0.1998 3.1184 8 6 5.7379 -0.6109 2.1403 9 6 6.2482 -1.8908 1.9680 10 6 7.6197 -2.1073 1.9271 11 6 8.5033 -1.0778 2.0646 12 6 8.0317 0.2321 2.2462 13 6 8.9047 1.3230 2.3916 14 7 8.4194 2.5311 2.5598 15 6 7.1184 2.7817 2.6002 16 6 6.1911 1.7912 2.4678 17 6 6.6348 0.4729 2.2846 18 6 4.1053 -1.4267 -0.0310 19 6 3.5709 -0.6949 -1.2662 20 6 2.0408 -0.7229 -1.2485 21 1 1.6581 -0.2242 -2.1390 22 7 1.5783 -2.1129 -1.2311 23 6 1.4468 -2.8055 -2.4051 24 1 1.6844 -2.3271 -3.3438 25 6 1.0091 -4.1226 -2.3886 26 7 0.7200 -4.7057 -1.2446 27 14 0.8290 -5.0671 -3.9901 28 1 2.1062 -5.7564 -4.3046 29 1 -0.2552 -6.0726 -3.8526 30 1 0.4927 -4.1234 -5.0863 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 1.6053 -1.7217 1.2977 35 1 1.7637 -0.1603 2.1401 36 1 5.5719 -2.7259 1.8605 37 1 7.9935 -3.1111 1.7884 38 1 9.5656 -1.2699 2.0334 39 1 9.9732 1.1681 2.3650 40 1 6.7837 3.7987 2.7419 41 1 5.1355 2.0168 2.5032 42 1 3.8375 -2.4818 -0.0871 43 1 5.1896 -1.3246 0.0135 44 1 3.9334 -1.1894 -2.1673 45 1 3.9158 0.3390 -1.2548 46 1 1.3652 -2.5427 -0.3880 47 1 0.4145 -5.6263 -1.2330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036292598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:57 Heat of formation + Delta-G solvation = 16.807451 kcal Electronic energy + Delta-G solvation = -29840.982713 eV Core-core repulsion = 25987.943767 eV Total energy + Delta-G solvation = -3853.038946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.21817 -41.03586 -39.18658 -38.15440 -35.91238 -34.61391 -33.91576 -33.01632 -32.23552 -31.02479 -30.79531 -27.76229 -26.76813 -25.54286 -25.17208 -24.55599 -23.89976 -23.10753 -21.06145 -19.84039 -19.29649 -19.13141 -18.41717 -17.77132 -17.60796 -16.95523 -16.59147 -16.14160 -15.93545 -15.75862 -15.59959 -15.35609 -15.20821 -14.89056 -14.76243 -14.64507 -14.33124 -14.23216 -13.67248 -13.60443 -13.30571 -13.03214 -12.95364 -12.86862 -12.84176 -12.68371 -12.49601 -12.42567 -12.11298 -12.00207 -11.92821 -11.60221 -11.29503 -11.18699 -11.00956 -10.84518 -10.52607 -10.12333 -9.69957 -9.10832 -8.92657 -7.88457 -5.14866 -0.82643 -0.16318 0.65707 1.50021 1.50636 1.51320 1.58542 1.85425 2.07993 2.60015 3.02524 3.25932 3.45280 3.47648 3.61942 3.74728 3.79712 3.83643 3.86909 3.91734 3.99963 4.05850 4.17038 4.26940 4.33594 4.37194 4.43394 4.54361 4.58899 4.67493 4.71961 4.73169 4.80689 4.89687 4.91602 4.99367 5.05014 5.10308 5.17157 5.23115 5.25806 5.28439 5.33330 5.44946 5.57315 5.59918 5.60789 5.75931 6.30675 6.33188 6.93654 6.96021 7.41135 8.15759 8.40567 9.34602 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.003236 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.712086 B = 8650.811833 C = 9547.912080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.123 3.877 5 N -0.591 5.591 6 C 0.560 3.440 7 O -0.576 6.576 8 C -0.148 4.148 9 C -0.053 4.053 10 C -0.128 4.128 11 C -0.044 4.044 12 C -0.132 4.132 13 C 0.159 3.841 14 N -0.511 5.511 15 C 0.080 3.920 16 C -0.172 4.172 17 C -0.006 4.006 18 C 0.122 3.878 19 C -0.142 4.142 20 C 0.174 3.826 21 H 0.048 0.952 22 N -0.723 5.723 23 C -0.227 4.227 24 H 0.074 0.926 25 C -0.070 4.070 26 N -0.967 5.967 27 Si 0.962 3.038 28 H -0.289 1.289 29 H -0.303 1.303 30 H -0.273 1.273 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.207 0.793 40 H 0.169 0.831 41 H 0.123 0.877 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.374 0.626 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.383 9.656 5.859 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.100 0.900 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.349 3.651 7 O -0.457 6.457 8 C -0.151 4.151 9 C -0.073 4.073 10 C -0.146 4.146 11 C -0.064 4.064 12 C -0.134 4.134 13 C -0.013 4.013 14 N -0.220 5.220 15 C -0.062 4.062 16 C -0.192 4.192 17 C -0.012 4.012 18 C 0.000 4.000 19 C -0.183 4.183 20 C 0.065 3.935 21 H 0.066 0.934 22 N -0.364 5.364 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.262 4.262 26 N -0.618 5.618 27 Si 0.793 3.207 28 H -0.216 1.216 29 H -0.230 1.230 30 H -0.198 1.198 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.185 0.815 38 H 0.201 0.799 39 H 0.224 0.776 40 H 0.186 0.814 41 H 0.141 0.859 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.208 0.792 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.516 10.743 6.245 21.476 hybrid contribution -1.692 -1.722 -0.600 2.487 sum 15.824 9.021 5.645 19.070 Atomic orbital electron populations 1.21594 0.93790 1.01652 1.01823 1.21620 0.96789 0.99161 0.94247 0.89984 1.21563 0.78732 1.00565 0.99065 1.48094 1.06862 1.59147 1.18014 1.18512 0.87002 0.77767 0.81796 1.90736 1.75798 1.43540 1.35674 1.19703 0.91618 0.95296 1.08455 1.21725 0.97723 0.94925 0.92930 1.21226 0.91240 1.01881 1.00214 1.21643 1.02547 0.89357 0.92841 1.19288 0.92148 0.97527 1.04411 1.23934 1.01419 0.85753 0.90160 1.67524 1.15887 1.24818 1.13733 1.22454 0.87927 1.00230 0.95627 1.21945 1.01541 0.93172 1.02547 1.18064 0.93417 0.93000 0.96726 1.21718 0.97892 0.97262 0.83128 1.22400 0.98662 0.99815 0.97399 1.20405 0.91980 0.85355 0.95721 0.93420 1.42560 1.79087 1.09111 1.05664 1.19547 1.34894 0.93873 0.87625 0.90790 1.25355 1.03474 0.98366 0.99054 1.69795 1.53793 1.12837 1.25424 0.85299 0.76684 0.78421 0.80291 1.21628 1.23007 1.19844 0.93909 0.91692 0.92153 0.92492 0.89764 0.84914 0.81495 0.79884 0.77610 0.81350 0.85862 0.92040 0.88920 0.91212 0.91466 0.79209 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.05 71.98 0.65 -3.46 16 2 C -0.10 -3.15 2.67 -10.72 -0.03 -3.18 16 3 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.12 4.19 5.43 86.36 0.47 4.66 16 5 N -0.59 -19.19 2.97 -822.77 -2.45 -21.63 16 6 C 0.56 18.62 6.50 86.67 0.56 19.18 16 7 O -0.58 -22.47 15.21 -4.03 -0.06 -22.53 16 8 C -0.15 -4.07 4.62 -19.92 -0.09 -4.16 16 9 C -0.05 -1.17 7.77 22.58 0.18 -0.99 16 10 C -0.13 -1.87 9.92 21.99 0.22 -1.65 16 11 C -0.04 -0.55 9.78 22.36 0.22 -0.33 16 12 C -0.13 -2.49 5.74 -21.33 -0.12 -2.61 16 13 C 0.16 2.61 11.05 85.32 0.94 3.55 16 14 N -0.51 -11.10 10.30 -195.39 -2.01 -13.11 16 15 C 0.08 1.83 11.07 84.14 0.93 2.76 16 16 C -0.17 -4.61 9.29 22.32 0.21 -4.40 16 17 C -0.01 -0.17 5.77 -21.11 -0.12 -0.29 16 18 C 0.12 3.80 5.32 86.36 0.46 4.26 16 19 C -0.14 -4.53 5.78 30.67 0.18 -4.35 16 20 C 0.17 6.31 2.53 45.02 0.11 6.43 16 21 H 0.05 1.78 8.08 -2.38 -0.02 1.76 16 22 N -0.72 -32.83 3.64 -322.79 -1.17 -34.00 16 23 C -0.23 -11.63 9.93 84.03 0.83 -10.80 16 24 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 25 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 26 N -0.97 -56.33 13.06 21.65 0.28 -56.05 16 27 Si 0.96 44.31 29.55 68.60 2.03 46.34 16 28 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 29 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 30 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 31 H 0.04 1.59 7.54 -2.39 -0.02 1.58 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.18 6.64 -2.39 -0.02 2.16 16 35 H 0.08 2.89 6.99 -2.39 -0.02 2.87 16 36 H 0.13 2.95 7.75 -2.91 -0.02 2.93 16 37 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.21 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 41 H 0.12 3.67 6.57 -2.91 -0.02 3.66 16 42 H 0.06 2.24 7.74 -2.39 -0.02 2.23 16 43 H 0.09 2.49 5.39 -2.39 -0.01 2.48 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.37 18.54 5.92 -92.71 -0.55 17.99 16 47 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -68.94 375.48 3.13 -65.82 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.44 Total: 33.90 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 6.07 Total: 1.27 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -5.35 Total: -124.80 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.06 Total: -22.53 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -68.94 3.13 -65.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036292598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.625 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds