Wall clock time and date at job start Tue Mar 31 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.52523 * 2 1 4 4 C 1.53196 * 109.49839 * 239.91943 * 2 1 3 5 5 N 1.46917 * 108.77913 * 185.41073 * 4 2 1 6 6 C 1.34774 * 120.63606 * 233.62809 * 5 4 2 7 7 O 1.21605 * 120.00194 * 174.19550 * 6 5 4 8 8 C 1.47440 * 119.99856 * 354.19988 * 6 5 4 9 9 C 1.38954 * 121.16910 * 306.14770 * 8 6 5 10 10 N 1.32195 * 121.31786 * 179.72283 * 9 8 6 11 11 C 1.31203 * 123.69398 * 0.55994 * 10 9 8 12 12 C 1.40384 * 120.91983 * 359.74230 * 11 10 9 13 13 C 1.40392 * 122.14783 * 180.02562 * 12 11 10 14 14 C 1.36231 * 119.48352 * 179.97438 * 13 12 11 15 15 C 1.39294 * 121.10669 * 0.02562 * 14 13 12 16 16 C 1.36440 * 120.94971 * 359.97438 * 15 14 13 17 17 C 1.39688 * 119.43244 * 0.02562 * 16 15 14 18 18 C 1.46929 * 118.73727 * 53.61124 * 5 4 2 19 19 C 1.53195 * 108.77381 * 306.38907 * 18 5 4 20 20 C 1.53037 * 109.31245 * 54.63686 * 19 18 5 21 21 H 1.08998 * 109.46185 * 58.65149 * 20 19 18 22 22 N 1.46501 * 109.46201 * 178.61268 * 20 19 18 23 23 C 1.36931 * 120.00274 * 275.00197 * 22 20 19 24 24 H 1.07999 * 119.99691 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00252 * 179.97438 * 23 22 20 26 26 N 1.31624 * 120.00131 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00037 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47281 * 89.99976 * 27 25 23 29 29 H 1.48495 * 109.47185 * 209.99946 * 27 25 23 30 30 H 1.48502 * 109.46884 * 329.99914 * 27 25 23 31 31 H 1.09001 * 109.46814 * 299.92219 * 1 2 3 32 32 H 1.09001 * 109.47000 * 59.91466 * 1 2 3 33 33 H 1.08993 * 109.46851 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.58536 * 65.62496 * 4 2 1 35 35 H 1.09007 * 109.70139 * 305.27383 * 4 2 1 36 36 H 1.07998 * 119.34323 * 0.02562 * 9 8 6 37 37 H 1.08008 * 119.54011 * 179.71682 * 11 10 9 38 38 H 1.07996 * 120.25499 * 359.95555 * 13 12 11 39 39 H 1.08001 * 119.44086 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.52256 * 179.97438 * 15 14 13 41 41 H 1.07995 * 120.28508 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.58994 * 186.60151 * 18 5 4 43 43 H 1.09000 * 109.59018 * 66.17762 * 18 5 4 44 44 H 1.09003 * 109.49837 * 294.68206 * 19 18 5 45 45 H 1.09006 * 109.52154 * 174.60267 * 19 18 5 46 46 H 0.97008 * 119.99736 * 94.99951 * 22 20 19 47 47 H 0.97000 * 119.99581 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5045 -0.8291 -1.1697 6 6 4.2811 -0.3856 -2.1780 7 8 5.4911 -0.3809 -2.0568 8 6 3.6636 0.0938 -3.4281 9 6 2.7657 -0.6961 -4.1357 10 7 2.2061 -0.2670 -5.2539 11 6 2.4507 0.9070 -5.7863 12 6 3.3433 1.8033 -5.1776 13 6 3.6234 3.0657 -5.7243 14 6 4.4987 3.8929 -5.0876 15 6 5.1214 3.5071 -3.9028 16 6 4.8723 2.2877 -3.3439 17 6 3.9799 1.4147 -3.9707 18 6 4.1053 -1.4267 0.0306 19 6 3.5709 -0.6950 1.2659 20 6 2.0409 -0.7231 1.2483 21 1 1.6968 -1.7573 1.2352 22 7 1.5266 -0.0530 2.4453 23 6 1.3953 -0.7496 3.6168 24 1 1.6704 -1.7931 3.6583 25 6 0.9085 -0.1145 4.7511 26 7 0.7818 -0.7842 5.8771 27 14 0.4333 1.6906 4.6795 28 1 -0.9976 1.8112 4.3009 29 1 0.6469 2.3119 6.0112 30 1 1.2727 2.3838 3.6695 31 1 -0.3633 0.5126 0.8907 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7638 -0.1579 -2.1389 35 1 1.6053 -1.7216 -1.3006 36 1 2.5163 -1.6782 -3.7622 37 1 1.9586 1.1876 -6.7059 38 1 3.1489 3.3784 -6.6426 39 1 4.7134 4.8640 -5.5085 40 1 5.8114 4.1831 -3.4196 41 1 5.3613 1.9994 -2.4252 42 1 5.1896 -1.3247 -0.0139 43 1 3.8376 -2.4819 0.0866 44 1 3.9160 0.3389 1.2540 45 1 3.9335 -1.1893 2.1673 46 1 1.2792 0.8842 2.4079 47 1 0.4419 -0.3403 6.6698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036301952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:44 Heat of formation + Delta-G solvation = 36.212887 kcal Electronic energy + Delta-G solvation = -29531.455686 eV Core-core repulsion = 25679.258223 eV Total energy + Delta-G solvation = -3852.197463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.26217 -39.86812 -37.82639 -37.66357 -34.77967 -33.28219 -32.73844 -31.77209 -31.50491 -30.42393 -29.52153 -26.54797 -25.80449 -24.63371 -23.84927 -23.26865 -22.13323 -21.61348 -20.27429 -19.37739 -18.46565 -17.85329 -17.66147 -17.18625 -16.32399 -16.07107 -15.29835 -14.98219 -14.89807 -14.59435 -14.39790 -14.39260 -14.03987 -13.90984 -13.65010 -13.36689 -13.24582 -12.79599 -12.64096 -12.50253 -12.42793 -12.23564 -11.98179 -11.82305 -11.63932 -11.47893 -11.05959 -10.93628 -10.75049 -10.57013 -10.48089 -10.32617 -10.20781 -9.86694 -9.62538 -9.57602 -9.43179 -8.96195 -8.65702 -8.40136 -7.30961 -5.80870 -3.16490 -0.17048 0.54563 1.39053 2.46375 2.69384 2.93987 3.33681 3.36473 3.42203 3.69377 3.95919 4.15669 4.22694 4.36065 4.50957 4.55150 4.57807 4.80108 4.82356 4.89536 4.94245 5.13657 5.18802 5.25132 5.28246 5.39023 5.45081 5.47930 5.56482 5.60111 5.62964 5.69104 5.73248 5.85546 6.00268 6.01080 6.05580 6.09709 6.17703 6.19714 6.22157 6.36501 6.45266 6.46716 6.59699 6.76315 6.90881 7.30522 7.56693 7.94537 8.00718 8.38191 9.16106 9.88840 10.08522 11.37448 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.003031 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.396880 B = 9235.367444 C = 9537.798374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.111 3.889 5 N -0.597 5.597 6 C 0.566 3.434 7 O -0.535 6.535 8 C -0.159 4.159 9 C 0.115 3.885 10 N -0.491 5.491 11 C 0.166 3.834 12 C -0.117 4.117 13 C -0.086 4.086 14 C -0.119 4.119 15 C -0.093 4.093 16 C -0.103 4.103 17 C 0.008 3.992 18 C 0.112 3.888 19 C -0.151 4.151 20 C 0.189 3.811 21 H 0.058 0.942 22 N -0.745 5.745 23 C -0.242 4.242 24 H 0.091 0.909 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.507 6.428 -25.882 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C -0.012 4.012 5 N -0.329 5.329 6 C 0.353 3.647 7 O -0.413 6.413 8 C -0.164 4.164 9 C -0.029 4.029 10 N -0.198 5.198 11 C -0.005 4.005 12 C -0.119 4.119 13 C -0.106 4.106 14 C -0.137 4.137 15 C -0.112 4.112 16 C -0.121 4.121 17 C 0.003 3.997 18 C -0.010 4.010 19 C -0.192 4.192 20 C 0.079 3.921 21 H 0.076 0.924 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.178 0.822 37 H 0.183 0.817 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.568 5.553 -25.880 26.860 hybrid contribution 0.230 1.912 0.652 2.033 sum 4.798 7.465 -25.227 26.743 Atomic orbital electron populations 1.21675 0.93935 1.02330 1.01591 1.21784 0.96652 1.00015 0.94916 0.91311 1.21982 0.78769 1.01357 0.99092 1.48126 1.07171 1.59681 1.17899 1.17888 0.86492 0.77528 0.82771 1.90796 1.13638 1.55466 1.81378 1.21932 1.00803 0.95778 0.97864 1.22726 0.90672 0.99235 0.90236 1.67129 1.24521 1.16545 1.11611 1.23256 0.91774 0.87858 0.97652 1.18965 1.00095 0.96833 0.96005 1.20985 0.97658 0.92249 0.99713 1.20978 0.96924 1.00140 0.95610 1.21109 0.98630 0.96082 0.95387 1.21063 0.96957 0.93459 1.00639 1.18847 0.95198 0.92314 0.93372 1.21787 0.99199 0.96733 0.83290 1.22647 0.99534 1.00571 0.96432 1.20174 0.90643 0.96018 0.85248 0.92357 1.42768 1.78219 1.10026 1.07658 1.19047 1.36334 0.95700 0.86111 0.89161 1.24654 1.01367 0.97354 0.95616 1.69698 1.52069 1.35667 1.00654 0.86597 0.78523 0.86842 0.76835 1.21060 1.21766 1.20436 0.91314 0.93650 0.92332 0.90190 0.90641 0.82223 0.81675 0.84607 0.85316 0.85213 0.84491 0.89317 0.91160 0.92357 0.89956 0.80667 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.03 37.16 0.34 -1.60 16 2 C -0.11 -1.66 2.46 -90.50 -0.22 -1.88 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.11 1.35 4.89 -3.71 -0.02 1.33 16 5 N -0.60 -8.05 2.97 -174.03 -0.52 -8.57 16 6 C 0.57 8.16 6.64 -12.51 -0.08 8.07 16 7 O -0.53 -9.21 15.40 5.27 0.08 -9.13 16 8 C -0.16 -2.00 4.78 -102.66 -0.49 -2.49 16 9 C 0.12 1.28 8.98 -17.13 -0.15 1.13 16 10 N -0.49 -5.27 10.22 -12.58 -0.13 -5.40 16 11 C 0.17 1.45 11.00 -17.01 -0.19 1.27 16 12 C -0.12 -1.12 5.74 -106.89 -0.61 -1.74 16 13 C -0.09 -0.62 9.82 -39.49 -0.39 -1.01 16 14 C -0.12 -0.86 9.94 -39.91 -0.40 -1.25 16 15 C -0.09 -0.82 9.96 -39.84 -0.40 -1.22 16 16 C -0.10 -1.20 9.36 -39.69 -0.37 -1.57 16 17 C 0.01 0.10 5.90 -104.74 -0.62 -0.52 16 18 C 0.11 1.59 6.44 -3.71 -0.02 1.56 16 19 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 20 C 0.19 3.35 2.19 -67.89 -0.15 3.21 16 21 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 22 N -0.74 -16.62 4.21 -53.39 -0.22 -16.84 16 23 C -0.24 -6.53 10.41 -15.06 -0.16 -6.68 16 24 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 27 Si 0.88 21.71 27.73 -169.99 -4.71 16.99 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 31 H 0.07 1.12 7.36 -51.93 -0.38 0.74 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.90 5.39 -51.93 -0.28 0.62 16 35 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.16 1.53 7.76 -52.49 -0.41 1.12 16 37 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.14 1.77 6.75 -52.49 -0.35 1.42 16 42 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.36 8.07 5.37 -40.82 -0.22 7.85 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -33.27 377.24 -9.89 -43.17 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.67 Total: 8.10 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -4.18 Total: -5.99 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.10 Total: -58.82 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.27 -9.89 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036301952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.379 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds