Wall clock time and date at job start Tue Mar 31 2020 22:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.52523 * 2 1 4 4 C 1.53196 * 109.49839 * 239.91943 * 2 1 3 5 5 N 1.46917 * 108.77913 * 185.41073 * 4 2 1 6 6 C 1.34774 * 120.63606 * 233.62809 * 5 4 2 7 7 O 1.21605 * 120.00194 * 174.19550 * 6 5 4 8 8 C 1.47440 * 119.99856 * 354.19988 * 6 5 4 9 9 C 1.38954 * 121.16910 * 306.14770 * 8 6 5 10 10 N 1.32195 * 121.31786 * 179.72283 * 9 8 6 11 11 C 1.31203 * 123.69398 * 0.55994 * 10 9 8 12 12 C 1.40384 * 120.91983 * 359.74230 * 11 10 9 13 13 C 1.40392 * 122.14783 * 180.02562 * 12 11 10 14 14 C 1.36231 * 119.48352 * 179.97438 * 13 12 11 15 15 C 1.39294 * 121.10669 * 0.02562 * 14 13 12 16 16 C 1.36440 * 120.94971 * 359.97438 * 15 14 13 17 17 C 1.39688 * 119.43244 * 0.02562 * 16 15 14 18 18 C 1.46929 * 118.73727 * 53.61124 * 5 4 2 19 19 C 1.53195 * 108.77381 * 306.38907 * 18 5 4 20 20 C 1.53037 * 109.31245 * 54.63686 * 19 18 5 21 21 H 1.08998 * 109.46185 * 58.65149 * 20 19 18 22 22 N 1.46501 * 109.46201 * 178.61268 * 20 19 18 23 23 C 1.36931 * 120.00274 * 275.00197 * 22 20 19 24 24 H 1.07999 * 119.99691 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00252 * 179.97438 * 23 22 20 26 26 N 1.31624 * 120.00131 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00037 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47281 * 89.99976 * 27 25 23 29 29 H 1.48495 * 109.47185 * 209.99946 * 27 25 23 30 30 H 1.48502 * 109.46884 * 329.99914 * 27 25 23 31 31 H 1.09001 * 109.46814 * 299.92219 * 1 2 3 32 32 H 1.09001 * 109.47000 * 59.91466 * 1 2 3 33 33 H 1.08993 * 109.46851 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.58536 * 65.62496 * 4 2 1 35 35 H 1.09007 * 109.70139 * 305.27383 * 4 2 1 36 36 H 1.07998 * 119.34323 * 0.02562 * 9 8 6 37 37 H 1.08008 * 119.54011 * 179.71682 * 11 10 9 38 38 H 1.07996 * 120.25499 * 359.95555 * 13 12 11 39 39 H 1.08001 * 119.44086 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.52256 * 179.97438 * 15 14 13 41 41 H 1.07995 * 120.28508 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.58994 * 186.60151 * 18 5 4 43 43 H 1.09000 * 109.59018 * 66.17762 * 18 5 4 44 44 H 1.09003 * 109.49837 * 294.68206 * 19 18 5 45 45 H 1.09006 * 109.52154 * 174.60267 * 19 18 5 46 46 H 0.97008 * 119.99736 * 94.99951 * 22 20 19 47 47 H 0.97000 * 119.99581 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5045 -0.8291 -1.1697 6 6 4.2811 -0.3856 -2.1780 7 8 5.4911 -0.3809 -2.0568 8 6 3.6636 0.0938 -3.4281 9 6 2.7657 -0.6961 -4.1357 10 7 2.2061 -0.2670 -5.2539 11 6 2.4507 0.9070 -5.7863 12 6 3.3433 1.8033 -5.1776 13 6 3.6234 3.0657 -5.7243 14 6 4.4987 3.8929 -5.0876 15 6 5.1214 3.5071 -3.9028 16 6 4.8723 2.2877 -3.3439 17 6 3.9799 1.4147 -3.9707 18 6 4.1053 -1.4267 0.0306 19 6 3.5709 -0.6950 1.2659 20 6 2.0409 -0.7231 1.2483 21 1 1.6968 -1.7573 1.2352 22 7 1.5266 -0.0530 2.4453 23 6 1.3953 -0.7496 3.6168 24 1 1.6704 -1.7931 3.6583 25 6 0.9085 -0.1145 4.7511 26 7 0.7818 -0.7842 5.8771 27 14 0.4333 1.6906 4.6795 28 1 -0.9976 1.8112 4.3009 29 1 0.6469 2.3119 6.0112 30 1 1.2727 2.3838 3.6695 31 1 -0.3633 0.5126 0.8907 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7638 -0.1579 -2.1389 35 1 1.6053 -1.7216 -1.3006 36 1 2.5163 -1.6782 -3.7622 37 1 1.9586 1.1876 -6.7059 38 1 3.1489 3.3784 -6.6426 39 1 4.7134 4.8640 -5.5085 40 1 5.8114 4.1831 -3.4196 41 1 5.3613 1.9994 -2.4252 42 1 5.1896 -1.3247 -0.0139 43 1 3.8376 -2.4819 0.0866 44 1 3.9160 0.3389 1.2540 45 1 3.9335 -1.1893 2.1673 46 1 1.2792 0.8842 2.4079 47 1 0.4419 -0.3403 6.6698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036301952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:43 Heat of formation + Delta-G solvation = 15.666290 kcal Electronic energy + Delta-G solvation = -29532.346653 eV Core-core repulsion = 25679.258223 eV Total energy + Delta-G solvation = -3853.088430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.10559 -40.88675 -39.12608 -38.35344 -36.33892 -34.35305 -34.12655 -33.18347 -32.21314 -31.87013 -30.53506 -27.70486 -27.04634 -25.81041 -24.59604 -24.31370 -23.48239 -22.84514 -21.57579 -20.58703 -19.55611 -19.18579 -18.51659 -18.26789 -17.36404 -16.89610 -16.76336 -16.17744 -16.07052 -15.73366 -15.49807 -15.25363 -15.20797 -14.96129 -14.74946 -14.69469 -14.49335 -14.14979 -13.81763 -13.61858 -13.48806 -13.23263 -13.01796 -12.96574 -12.93306 -12.83707 -12.54445 -12.26672 -12.17884 -12.00324 -11.92467 -11.78132 -11.43643 -11.27459 -11.03000 -10.93683 -10.46207 -10.11384 -9.82055 -9.30768 -9.13354 -8.01863 -5.34282 -0.88617 -0.15594 0.66622 1.35710 1.38104 1.43814 1.45140 1.81979 2.06061 2.47391 2.98388 3.16550 3.29105 3.42011 3.49840 3.51388 3.66182 3.68148 3.83785 3.87003 3.94906 4.03791 4.22035 4.24652 4.27818 4.28071 4.36666 4.51862 4.56409 4.59167 4.59796 4.71990 4.73471 4.75539 4.91303 4.98617 4.99876 5.03577 5.06117 5.20272 5.36297 5.37551 5.39752 5.44985 5.50660 5.53044 5.78194 5.84117 6.21609 6.22317 6.82818 6.92927 7.07956 7.84256 8.02831 9.19805 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.003031 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.396880 B = 9235.367444 C = 9537.798374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.060 0.940 4 C 0.118 3.882 5 N -0.596 5.596 6 C 0.569 3.431 7 O -0.574 6.574 8 C -0.191 4.191 9 C 0.124 3.876 10 N -0.512 5.512 11 C 0.184 3.816 12 C -0.132 4.132 13 C -0.069 4.069 14 C -0.124 4.124 15 C -0.084 4.084 16 C -0.143 4.143 17 C -0.010 4.010 18 C 0.121 3.879 19 C -0.141 4.141 20 C 0.184 3.816 21 H 0.055 0.945 22 N -0.746 5.746 23 C -0.220 4.220 24 H 0.060 0.940 25 C -0.063 4.063 26 N -0.984 5.984 27 Si 0.949 3.051 28 H -0.275 1.275 29 H -0.299 1.299 30 H -0.259 1.259 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.170 0.830 37 H 0.209 0.791 38 H 0.179 0.821 39 H 0.163 0.837 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.363 0.637 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 8.624 -30.347 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.124 4.124 3 H 0.079 0.921 4 C -0.004 4.004 5 N -0.327 5.327 6 C 0.358 3.642 7 O -0.454 6.454 8 C -0.196 4.196 9 C -0.019 4.019 10 N -0.220 5.220 11 C 0.013 3.987 12 C -0.135 4.135 13 C -0.088 4.088 14 C -0.142 4.142 15 C -0.103 4.103 16 C -0.162 4.162 17 C -0.015 4.015 18 C -0.002 4.002 19 C -0.182 4.182 20 C 0.076 3.924 21 H 0.073 0.927 22 N -0.389 5.389 23 C -0.351 4.351 24 H 0.078 0.922 25 C -0.254 4.254 26 N -0.635 5.635 27 Si 0.777 3.223 28 H -0.202 1.202 29 H -0.227 1.227 30 H -0.184 1.184 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.187 0.813 37 H 0.226 0.774 38 H 0.197 0.803 39 H 0.181 0.819 40 H 0.162 0.838 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.196 0.804 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.307 7.751 -30.408 31.555 hybrid contribution 0.691 1.247 1.896 2.372 sum 3.998 8.998 -28.512 30.164 Atomic orbital electron populations 1.21635 0.93013 1.02726 1.01767 1.21671 0.97314 0.99322 0.94127 0.92130 1.22031 0.77702 1.02465 0.98208 1.48140 1.07797 1.59411 1.17372 1.18240 0.86012 0.76530 0.83460 1.90760 1.15408 1.56947 1.82294 1.21752 1.02976 0.97095 0.97747 1.22880 0.89645 0.99242 0.90125 1.67251 1.25336 1.17712 1.11676 1.23992 0.90098 0.86584 0.97992 1.19269 1.00466 0.98326 0.95396 1.21503 0.96333 0.90594 1.00375 1.21376 0.96463 1.01662 0.94710 1.21425 0.98057 0.94984 0.95835 1.20955 0.98973 0.95350 1.00892 1.19077 0.95712 0.92163 0.94575 1.21612 0.98735 0.97292 0.82558 1.22451 0.98798 0.99911 0.97009 1.20399 0.90930 0.95936 0.85157 0.92732 1.42773 1.78416 1.10033 1.07633 1.19004 1.33881 0.94631 0.87612 0.92165 1.25406 1.02659 1.01992 0.95342 1.69874 1.54439 1.37688 1.01529 0.85505 0.78721 0.81413 0.76690 1.20153 1.22653 1.18409 0.93736 0.90817 0.91860 0.88545 0.88534 0.81263 0.77434 0.80345 0.81916 0.83773 0.87447 0.90115 0.89405 0.93622 0.92063 0.80439 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.03 71.98 0.65 -2.84 16 2 C -0.10 -2.92 2.46 -10.71 -0.03 -2.95 16 3 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.12 2.68 4.89 86.37 0.42 3.10 16 5 N -0.60 -16.01 2.97 -822.75 -2.45 -18.46 16 6 C 0.57 16.76 6.64 86.67 0.58 17.33 16 7 O -0.57 -20.84 15.40 -4.05 -0.06 -20.91 16 8 C -0.19 -4.72 4.78 -18.59 -0.09 -4.81 16 9 C 0.12 2.56 8.98 84.81 0.76 3.32 16 10 N -0.51 -9.49 10.22 -193.71 -1.98 -11.47 16 11 C 0.18 2.48 11.00 85.31 0.94 3.42 16 12 C -0.13 -2.13 5.74 -21.33 -0.12 -2.25 16 13 C -0.07 -0.66 9.82 22.33 0.22 -0.44 16 14 C -0.12 -1.32 9.94 22.06 0.22 -1.10 16 15 C -0.08 -1.37 9.96 22.10 0.22 -1.15 16 16 C -0.14 -3.39 9.36 22.20 0.21 -3.19 16 17 C -0.01 -0.23 5.90 -19.94 -0.12 -0.35 16 18 C 0.12 3.49 6.44 86.36 0.56 4.05 16 19 C -0.14 -4.87 5.66 30.67 0.17 -4.70 16 20 C 0.18 6.56 2.19 45.02 0.10 6.66 16 21 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 22 N -0.75 -33.56 4.21 -322.82 -1.36 -34.92 16 23 C -0.22 -12.20 10.41 84.03 0.87 -11.32 16 24 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 25 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 26 N -0.98 -62.81 13.97 21.65 0.30 -62.50 16 27 Si 0.95 45.47 27.73 68.60 1.90 47.37 16 28 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 29 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 30 H -0.26 -11.43 6.52 99.48 0.65 -10.78 16 31 H 0.04 1.38 7.36 -2.39 -0.02 1.37 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.96 5.39 -2.38 -0.01 1.94 16 35 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.17 2.94 7.76 -2.91 -0.02 2.91 16 37 H 0.21 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 39 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.11 3.07 6.75 -2.91 -0.02 3.05 16 42 H 0.08 2.50 7.00 -2.39 -0.02 2.48 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.36 16.03 5.37 -92.70 -0.50 15.53 16 47 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -76.92 377.24 2.82 -74.10 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.43 Total: 27.19 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 6.03 Total: -0.41 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -5.48 Total: -127.35 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Total: -76.92 2.82 -74.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036301952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.769 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds