Wall clock time and date at job start Tue Mar 31 2020 22:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49542 * 2 1 4 4 C 1.52763 * 109.58999 * 240.05183 * 2 1 3 5 5 N 1.46930 * 109.00837 * 185.53101 * 4 2 1 6 6 C 1.34774 * 120.63296 * 233.58418 * 5 4 2 7 7 O 1.21600 * 119.99742 * 5.51093 * 6 5 4 8 8 C 1.47435 * 120.00019 * 185.50901 * 6 5 4 9 9 C 1.38960 * 121.17070 * 53.83369 * 8 6 5 10 10 N 1.32193 * 121.31553 * 180.27132 * 9 8 6 11 11 C 1.31202 * 123.69791 * 0.02562 * 10 9 8 12 12 C 1.40384 * 120.91676 * 359.97438 * 11 10 9 13 13 C 1.40396 * 122.14618 * 180.02562 * 12 11 10 14 14 C 1.36224 * 119.48682 * 179.97438 * 13 12 11 15 15 C 1.39297 * 121.10825 * 0.02562 * 14 13 12 16 16 C 1.36438 * 120.94400 * 359.97438 * 15 14 13 17 17 C 1.39698 * 119.43857 * 0.02562 * 16 15 14 18 18 C 1.46926 * 118.73225 * 53.31167 * 5 4 2 19 19 C 1.53189 * 108.77503 * 306.63740 * 18 5 4 20 20 C 1.53038 * 109.50061 * 120.06639 * 2 1 3 21 21 H 1.08996 * 109.46354 * 301.37252 * 20 2 1 22 22 N 1.46506 * 109.45718 * 61.33142 * 20 2 1 23 23 C 1.36933 * 119.99942 * 205.06618 * 22 20 2 24 24 H 1.08005 * 119.99793 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00065 * 179.97438 * 23 22 20 26 26 N 1.31628 * 120.00268 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00140 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47074 * 89.99443 * 27 25 23 29 29 H 1.48499 * 109.47048 * 209.99663 * 27 25 23 30 30 H 1.48502 * 109.46864 * 329.99864 * 27 25 23 31 31 H 1.09004 * 109.46895 * 299.92859 * 1 2 3 32 32 H 1.08999 * 109.47605 * 59.92786 * 1 2 3 33 33 H 1.08998 * 109.47103 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.50704 * 65.64982 * 4 2 1 35 35 H 1.08999 * 109.43090 * 305.37219 * 4 2 1 36 36 H 1.07995 * 119.34009 * 0.27145 * 9 8 6 37 37 H 1.08001 * 119.54053 * 179.97438 * 11 10 9 38 38 H 1.08007 * 120.25519 * 359.95119 * 13 12 11 39 39 H 1.07999 * 119.44952 * 179.97438 * 14 13 12 40 40 H 1.07996 * 119.53157 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.28367 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.58717 * 66.42902 * 18 5 4 43 43 H 1.09002 * 109.57880 * 186.85128 * 18 5 4 44 44 H 1.09008 * 109.49376 * 174.58498 * 19 18 5 45 45 H 1.08992 * 109.50420 * 294.68362 * 19 18 5 46 46 H 0.97005 * 119.99902 * 25.06318 * 22 20 2 47 47 H 0.97000 * 120.00139 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0422 -0.7185 -1.2470 5 7 3.5053 -0.8281 -1.1692 6 6 4.2819 -0.3842 -2.1773 7 8 3.7812 0.2025 -3.1173 8 6 5.7384 -0.6100 -2.1403 9 6 6.2644 -1.8841 -1.9645 10 7 7.5698 -2.0891 -1.9256 11 6 8.4606 -1.1334 -2.0458 12 6 8.0662 0.2014 -2.2286 13 6 8.9972 1.2441 -2.3606 14 6 8.5542 2.5202 -2.5365 15 6 7.1924 2.8088 -2.5871 16 6 6.2606 1.8200 -2.4623 17 6 6.6803 0.5000 -2.2807 18 6 4.1059 -1.4254 0.0314 19 6 3.5709 -0.6939 1.2664 20 6 2.0409 -0.7227 1.2485 21 1 1.6578 -0.2244 2.1389 22 7 1.5791 -2.1130 1.2308 23 6 1.4476 -2.8058 2.4047 24 1 1.6840 -2.3271 3.3436 25 6 1.0096 -4.1228 2.3880 26 7 0.8838 -4.7889 3.5163 27 14 0.6001 -4.9505 0.7642 28 1 1.8164 -5.6089 0.2236 29 1 -0.4591 -5.9685 0.9808 30 1 0.1175 -3.9319 -0.2027 31 1 -0.3633 0.5127 0.8907 32 1 -0.3634 0.5149 -0.8893 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7651 -0.1495 -2.1346 35 1 1.6032 -1.7149 -1.2975 36 1 5.5935 -2.7235 -1.8575 37 1 9.5120 -1.3770 -2.0035 38 1 10.0563 1.0360 -2.3227 39 1 9.2709 3.3218 -2.6376 40 1 6.8695 3.8297 -2.7280 41 1 5.2075 2.0557 -2.5035 42 1 3.8386 -2.4807 0.0873 43 1 5.1902 -1.3228 -0.0130 44 1 3.9334 -1.1885 2.1676 45 1 3.9154 0.3401 1.2546 46 1 1.3664 -2.5428 0.3876 47 1 0.5780 -5.7094 3.5046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036301954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:48 Heat of formation + Delta-G solvation = 38.699640 kcal Electronic energy + Delta-G solvation = -29915.123435 eV Core-core repulsion = 26063.033806 eV Total energy + Delta-G solvation = -3852.089629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.18644 -39.87192 -37.86656 -37.58857 -34.51286 -33.32320 -32.64690 -31.57063 -31.44276 -30.08573 -29.77088 -26.70747 -25.65117 -24.42577 -23.79393 -23.20442 -22.77112 -21.74329 -20.06955 -18.55343 -18.34844 -17.89353 -17.67759 -17.14342 -16.24732 -15.98179 -15.25562 -14.95000 -14.75329 -14.59563 -14.43283 -14.25427 -14.02379 -13.83618 -13.64617 -13.49851 -13.16595 -12.82195 -12.61278 -12.50427 -12.33449 -12.18995 -11.83154 -11.64688 -11.56499 -11.44802 -11.04277 -10.98371 -10.68604 -10.56736 -10.40689 -10.24889 -10.11865 -9.91396 -9.59136 -9.51202 -9.37209 -8.99510 -8.49647 -8.32008 -7.32349 -5.81815 -3.17580 -0.09059 0.61644 1.45320 2.55580 2.77500 3.03101 3.31657 3.34130 3.41714 3.77007 4.06795 4.24046 4.31964 4.42824 4.53494 4.56453 4.66361 4.85557 4.96025 5.01573 5.08544 5.17860 5.25647 5.29688 5.34280 5.44826 5.46955 5.56333 5.59140 5.65658 5.70393 5.76019 5.82421 5.86705 6.01048 6.05894 6.13065 6.16910 6.24167 6.25992 6.32899 6.42130 6.50332 6.50974 6.61869 6.70735 6.81768 7.43167 7.67539 7.94022 8.09569 8.37102 9.14901 9.87451 10.07042 11.36512 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.003443 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.092169 B = 8129.601973 C = 8866.294678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.594 5.594 6 C 0.566 3.434 7 O -0.540 6.540 8 C -0.159 4.159 9 C 0.119 3.881 10 N -0.489 5.489 11 C 0.165 3.835 12 C -0.117 4.117 13 C -0.085 4.085 14 C -0.121 4.121 15 C -0.094 4.094 16 C -0.103 4.103 17 C 0.009 3.991 18 C 0.109 3.891 19 C -0.148 4.148 20 C 0.185 3.815 21 H 0.061 0.939 22 N -0.743 5.743 23 C -0.242 4.242 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.932 5.932 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.884 14.439 -12.066 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.325 5.325 6 C 0.353 3.647 7 O -0.419 6.419 8 C -0.164 4.164 9 C -0.025 4.025 10 N -0.196 5.196 11 C -0.006 4.006 12 C -0.120 4.120 13 C -0.105 4.105 14 C -0.139 4.139 15 C -0.114 4.114 16 C -0.121 4.121 17 C 0.003 3.997 18 C -0.014 4.014 19 C -0.189 4.189 20 C 0.075 3.925 21 H 0.079 0.921 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.070 0.930 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.700 13.738 -12.172 23.516 hybrid contribution -0.600 -0.007 -1.096 1.249 sum 14.100 13.731 -13.268 23.736 Atomic orbital electron populations 1.21676 0.94029 1.02905 1.00977 1.21677 0.96641 0.99341 0.95499 0.91028 1.21622 0.78175 1.01349 0.99313 1.48121 1.07120 1.59416 1.17890 1.17875 0.85461 0.78762 0.82579 1.90775 1.74774 1.41822 1.34534 1.21906 0.93799 0.94971 1.05713 1.22791 0.91409 0.95074 0.93241 1.67142 1.02616 1.36566 1.13279 1.23270 0.99563 0.87018 0.90787 1.18971 0.93030 0.95914 1.04035 1.20984 0.99103 0.92063 0.98330 1.20953 0.95869 0.96966 1.00067 1.21078 0.92956 0.99664 0.97665 1.21036 1.00977 0.91230 0.98861 1.18837 0.91490 0.93093 0.96254 1.21885 0.97027 0.98737 0.83706 1.22494 0.99991 0.98973 0.97469 1.20182 0.90861 0.86198 0.95250 0.92092 1.42839 1.80612 1.09386 1.05868 1.19045 1.37709 0.94098 0.86290 0.89161 1.24637 1.01473 0.96711 0.96023 1.69691 1.53041 1.10836 1.24436 0.86676 0.78239 0.79597 0.84716 1.21053 1.21702 1.20409 0.92251 0.93494 0.91582 0.89253 0.91200 0.82141 0.81678 0.84639 0.85388 0.85316 0.84581 0.89886 0.90885 0.90047 0.92963 0.80613 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.06 37.16 0.34 -1.69 16 2 C -0.11 -1.69 2.65 -90.72 -0.24 -1.93 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.82 5.41 -3.93 -0.02 1.80 16 5 N -0.59 -9.09 2.98 -174.29 -0.52 -9.61 16 6 C 0.57 8.87 6.63 -12.52 -0.08 8.79 16 7 O -0.54 -9.69 15.43 5.28 0.08 -9.60 16 8 C -0.16 -2.23 4.78 -102.66 -0.49 -2.72 16 9 C 0.12 1.59 8.97 -17.13 -0.15 1.43 16 10 N -0.49 -6.21 10.22 -12.58 -0.13 -6.33 16 11 C 0.17 1.67 11.00 -17.01 -0.19 1.48 16 12 C -0.12 -1.23 5.74 -106.89 -0.61 -1.84 16 13 C -0.08 -0.66 9.82 -39.49 -0.39 -1.04 16 14 C -0.12 -0.90 9.94 -39.91 -0.40 -1.29 16 15 C -0.09 -0.84 9.96 -39.84 -0.40 -1.24 16 16 C -0.10 -1.21 9.37 -39.69 -0.37 -1.58 16 17 C 0.01 0.11 5.91 -104.74 -0.62 -0.51 16 18 C 0.11 1.66 5.35 -3.71 -0.02 1.64 16 19 C -0.15 -2.36 5.78 -26.61 -0.15 -2.52 16 20 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 21 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 22 N -0.74 -15.92 3.44 -53.39 -0.18 -16.10 16 23 C -0.24 -6.34 10.41 -15.06 -0.16 -6.49 16 24 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 26 N -0.93 -28.36 13.97 55.49 0.78 -27.59 16 27 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.11 7.54 -51.93 -0.39 0.72 16 34 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 35 H 0.07 1.16 6.64 -51.93 -0.34 0.81 16 36 H 0.16 2.05 7.77 -52.49 -0.41 1.65 16 37 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.14 1.74 6.77 -52.49 -0.36 1.38 16 42 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16 43 H 0.07 1.03 5.39 -51.93 -0.28 0.75 16 44 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.36 7.73 3.80 -40.82 -0.16 7.58 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -32.15 373.33 -9.80 -41.96 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.52 Total: 9.56 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -4.22 Total: -4.53 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.06 Total: -59.63 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.15 -9.80 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036301954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.655 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds