Wall clock time and date at job start Tue Mar 31 2020 22:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49542 * 2 1 4 4 C 1.52763 * 109.58999 * 240.05183 * 2 1 3 5 5 N 1.46930 * 109.00837 * 185.53101 * 4 2 1 6 6 C 1.34774 * 120.63296 * 233.58418 * 5 4 2 7 7 O 1.21600 * 119.99742 * 5.51093 * 6 5 4 8 8 C 1.47435 * 120.00019 * 185.50901 * 6 5 4 9 9 C 1.38960 * 121.17070 * 53.83369 * 8 6 5 10 10 N 1.32193 * 121.31553 * 180.27132 * 9 8 6 11 11 C 1.31202 * 123.69791 * 0.02562 * 10 9 8 12 12 C 1.40384 * 120.91676 * 359.97438 * 11 10 9 13 13 C 1.40396 * 122.14618 * 180.02562 * 12 11 10 14 14 C 1.36224 * 119.48682 * 179.97438 * 13 12 11 15 15 C 1.39297 * 121.10825 * 0.02562 * 14 13 12 16 16 C 1.36438 * 120.94400 * 359.97438 * 15 14 13 17 17 C 1.39698 * 119.43857 * 0.02562 * 16 15 14 18 18 C 1.46926 * 118.73225 * 53.31167 * 5 4 2 19 19 C 1.53189 * 108.77503 * 306.63740 * 18 5 4 20 20 C 1.53038 * 109.50061 * 120.06639 * 2 1 3 21 21 H 1.08996 * 109.46354 * 301.37252 * 20 2 1 22 22 N 1.46506 * 109.45718 * 61.33142 * 20 2 1 23 23 C 1.36933 * 119.99942 * 205.06618 * 22 20 2 24 24 H 1.08005 * 119.99793 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00065 * 179.97438 * 23 22 20 26 26 N 1.31628 * 120.00268 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00140 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47074 * 89.99443 * 27 25 23 29 29 H 1.48499 * 109.47048 * 209.99663 * 27 25 23 30 30 H 1.48502 * 109.46864 * 329.99864 * 27 25 23 31 31 H 1.09004 * 109.46895 * 299.92859 * 1 2 3 32 32 H 1.08999 * 109.47605 * 59.92786 * 1 2 3 33 33 H 1.08998 * 109.47103 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.50704 * 65.64982 * 4 2 1 35 35 H 1.08999 * 109.43090 * 305.37219 * 4 2 1 36 36 H 1.07995 * 119.34009 * 0.27145 * 9 8 6 37 37 H 1.08001 * 119.54053 * 179.97438 * 11 10 9 38 38 H 1.08007 * 120.25519 * 359.95119 * 13 12 11 39 39 H 1.07999 * 119.44952 * 179.97438 * 14 13 12 40 40 H 1.07996 * 119.53157 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.28367 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.58717 * 66.42902 * 18 5 4 43 43 H 1.09002 * 109.57880 * 186.85128 * 18 5 4 44 44 H 1.09008 * 109.49376 * 174.58498 * 19 18 5 45 45 H 1.08992 * 109.50420 * 294.68362 * 19 18 5 46 46 H 0.97005 * 119.99902 * 25.06318 * 22 20 2 47 47 H 0.97000 * 120.00139 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0422 -0.7185 -1.2470 5 7 3.5053 -0.8281 -1.1692 6 6 4.2819 -0.3842 -2.1773 7 8 3.7812 0.2025 -3.1173 8 6 5.7384 -0.6100 -2.1403 9 6 6.2644 -1.8841 -1.9645 10 7 7.5698 -2.0891 -1.9256 11 6 8.4606 -1.1334 -2.0458 12 6 8.0662 0.2014 -2.2286 13 6 8.9972 1.2441 -2.3606 14 6 8.5542 2.5202 -2.5365 15 6 7.1924 2.8088 -2.5871 16 6 6.2606 1.8200 -2.4623 17 6 6.6803 0.5000 -2.2807 18 6 4.1059 -1.4254 0.0314 19 6 3.5709 -0.6939 1.2664 20 6 2.0409 -0.7227 1.2485 21 1 1.6578 -0.2244 2.1389 22 7 1.5791 -2.1130 1.2308 23 6 1.4476 -2.8058 2.4047 24 1 1.6840 -2.3271 3.3436 25 6 1.0096 -4.1228 2.3880 26 7 0.8838 -4.7889 3.5163 27 14 0.6001 -4.9505 0.7642 28 1 1.8164 -5.6089 0.2236 29 1 -0.4591 -5.9685 0.9808 30 1 0.1175 -3.9319 -0.2027 31 1 -0.3633 0.5127 0.8907 32 1 -0.3634 0.5149 -0.8893 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7651 -0.1495 -2.1346 35 1 1.6032 -1.7149 -1.2975 36 1 5.5935 -2.7235 -1.8575 37 1 9.5120 -1.3770 -2.0035 38 1 10.0563 1.0360 -2.3227 39 1 9.2709 3.3218 -2.6376 40 1 6.8695 3.8297 -2.7280 41 1 5.2075 2.0557 -2.5035 42 1 3.8386 -2.4807 0.0873 43 1 5.1902 -1.3228 -0.0130 44 1 3.9334 -1.1885 2.1676 45 1 3.9154 0.3401 1.2546 46 1 1.3664 -2.5428 0.3876 47 1 0.5780 -5.7094 3.5046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036301954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:47 Heat of formation + Delta-G solvation = 19.684080 kcal Electronic energy + Delta-G solvation = -29915.948012 eV Core-core repulsion = 26063.033806 eV Total energy + Delta-G solvation = -3852.914206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.14002 -40.98721 -39.20613 -38.36989 -36.03743 -34.73022 -33.74495 -33.16909 -32.20487 -31.54645 -30.84634 -27.88000 -27.00490 -25.47708 -25.00805 -24.53196 -23.61881 -23.11190 -21.21688 -19.97321 -19.76653 -19.20082 -18.52937 -18.24527 -17.35139 -16.91825 -16.69521 -16.29599 -15.95178 -15.75897 -15.59842 -15.27016 -15.19908 -15.09716 -14.86913 -14.58060 -14.50193 -14.28893 -13.74173 -13.68166 -13.36581 -13.28061 -13.05250 -12.97586 -12.91633 -12.75592 -12.51838 -12.27637 -12.08461 -12.02840 -11.97800 -11.71498 -11.40469 -11.25206 -11.09238 -10.91816 -10.48226 -10.11465 -9.79620 -9.28348 -9.13525 -7.99355 -5.30856 -0.89696 -0.16439 0.66669 1.36003 1.37339 1.43056 1.44511 1.79322 2.04839 2.48206 2.97817 3.14082 3.32540 3.39243 3.49243 3.56762 3.67229 3.71932 3.84746 3.86945 3.94319 3.94978 4.16572 4.24913 4.26145 4.28512 4.38447 4.48197 4.50091 4.57735 4.63902 4.70950 4.73645 4.86370 4.94297 5.00456 5.02864 5.05968 5.10032 5.17409 5.21195 5.37184 5.38759 5.44454 5.49228 5.52874 5.82408 5.85536 6.19766 6.24867 6.80715 6.90145 7.10800 7.86809 8.05483 9.22408 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.003443 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.092169 B = 8129.601973 C = 8866.294678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.118 3.882 5 N -0.594 5.594 6 C 0.571 3.429 7 O -0.568 6.568 8 C -0.187 4.187 9 C 0.116 3.884 10 N -0.518 5.518 11 C 0.181 3.819 12 C -0.133 4.133 13 C -0.070 4.070 14 C -0.122 4.122 15 C -0.080 4.080 16 C -0.139 4.139 17 C -0.009 4.009 18 C 0.119 3.881 19 C -0.141 4.141 20 C 0.179 3.821 21 H 0.053 0.947 22 N -0.741 5.741 23 C -0.214 4.214 24 H 0.062 0.938 25 C -0.058 4.058 26 N -0.983 5.983 27 Si 0.937 3.063 28 H -0.281 1.281 29 H -0.300 1.300 30 H -0.255 1.255 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.154 0.846 37 H 0.208 0.792 38 H 0.177 0.823 39 H 0.166 0.834 40 H 0.151 0.849 41 H 0.114 0.886 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.832 16.792 -13.969 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.360 3.640 7 O -0.449 6.449 8 C -0.193 4.193 9 C -0.027 4.027 10 N -0.226 5.226 11 C 0.010 3.990 12 C -0.135 4.135 13 C -0.090 4.090 14 C -0.139 4.139 15 C -0.099 4.099 16 C -0.157 4.157 17 C -0.014 4.014 18 C -0.003 4.003 19 C -0.181 4.181 20 C 0.071 3.929 21 H 0.071 0.929 22 N -0.385 5.385 23 C -0.345 4.345 24 H 0.080 0.920 25 C -0.250 4.250 26 N -0.635 5.635 27 Si 0.766 3.234 28 H -0.208 1.208 29 H -0.227 1.227 30 H -0.179 1.179 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.172 0.828 37 H 0.225 0.775 38 H 0.195 0.805 39 H 0.183 0.817 40 H 0.169 0.831 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.197 0.803 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.659 16.145 -14.106 27.776 hybrid contribution -1.332 -0.526 -0.497 1.516 sum 16.327 15.619 -14.603 26.903 Atomic orbital electron populations 1.21647 0.93442 1.01828 1.02338 1.21589 0.97046 0.99677 0.93724 0.89255 1.21590 0.78422 1.00806 0.99577 1.48105 1.07037 1.59393 1.17887 1.18142 0.86279 0.77785 0.81839 1.90739 1.75535 1.43152 1.35456 1.21770 0.92822 0.95958 1.08706 1.22724 0.92087 0.94660 0.93227 1.67202 1.02382 1.37673 1.15316 1.24007 1.00908 0.86474 0.87577 1.19272 0.92524 0.97056 1.04623 1.21485 1.00560 0.91204 0.95730 1.21404 0.95632 0.98081 0.98793 1.21454 0.93490 1.00010 0.94958 1.20974 1.00693 0.91916 1.02146 1.19063 0.92532 0.93017 0.96800 1.21727 0.97830 0.97392 0.83396 1.22363 0.98450 1.00195 0.97135 1.20386 0.91893 0.84205 0.96405 0.92915 1.42787 1.80667 1.10735 1.04325 1.18988 1.34786 0.93857 0.86836 0.92036 1.25300 1.02909 0.97696 0.99071 1.69858 1.55688 1.11063 1.26869 0.85678 0.77682 0.78718 0.81326 1.20792 1.22714 1.17933 0.91965 0.91125 0.93785 0.88868 0.92294 0.82838 0.77503 0.80535 0.81677 0.83128 0.86767 0.91809 0.89545 0.91583 0.90835 0.80345 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.06 71.98 0.65 -3.13 16 2 C -0.10 -2.94 2.65 -10.86 -0.03 -2.97 16 3 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 4 C 0.12 3.61 5.41 86.22 0.47 4.08 16 5 N -0.59 -18.21 2.98 -823.59 -2.45 -20.66 16 6 C 0.57 18.18 6.63 86.67 0.57 18.75 16 7 O -0.57 -20.80 15.43 -4.03 -0.06 -20.86 16 8 C -0.19 -5.30 4.78 -18.60 -0.09 -5.39 16 9 C 0.12 3.14 8.97 84.81 0.76 3.90 16 10 N -0.52 -12.56 10.22 -193.72 -1.98 -14.54 16 11 C 0.18 3.14 11.00 85.31 0.94 4.07 16 12 C -0.13 -2.41 5.74 -21.33 -0.12 -2.54 16 13 C -0.07 -0.75 9.82 22.33 0.22 -0.53 16 14 C -0.12 -1.23 9.94 22.06 0.22 -1.01 16 15 C -0.08 -1.20 9.96 22.10 0.22 -0.98 16 16 C -0.14 -3.17 9.37 22.20 0.21 -2.96 16 17 C -0.01 -0.22 5.91 -19.94 -0.12 -0.34 16 18 C 0.12 3.65 5.35 86.36 0.46 4.12 16 19 C -0.14 -4.46 5.78 30.67 0.18 -4.29 16 20 C 0.18 6.27 2.53 45.02 0.11 6.38 16 21 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 22 N -0.74 -31.97 3.44 -322.82 -1.11 -33.08 16 23 C -0.21 -11.48 10.41 84.03 0.87 -10.61 16 24 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 25 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 26 N -0.98 -61.97 13.97 21.65 0.30 -61.66 16 27 Si 0.94 44.92 27.74 68.60 1.90 46.82 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 30 H -0.25 -11.05 6.52 99.48 0.65 -10.40 16 31 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.43 7.54 -2.39 -0.02 1.41 16 34 H 0.09 2.81 7.00 -2.38 -0.02 2.79 16 35 H 0.06 1.93 6.64 -2.39 -0.02 1.91 16 36 H 0.15 4.11 7.77 -2.91 -0.02 4.09 16 37 H 0.21 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.18 0.41 8.06 -2.91 -0.02 0.38 16 39 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.11 3.01 6.77 -2.91 -0.02 2.99 16 42 H 0.06 2.21 7.74 -2.39 -0.02 2.20 16 43 H 0.09 2.45 5.39 -2.39 -0.01 2.44 16 44 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 46 H 0.36 15.47 3.80 -92.70 -0.35 15.12 16 47 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -73.48 373.33 3.18 -70.31 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.58 Total: 30.00 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.00 Total: 3.68 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -5.24 Total: -129.94 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.06 Total: -20.86 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Total: -73.48 3.18 -70.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036301954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.992 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds