Wall clock time and date at job start Tue Mar 31 2020 22:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49828 * 2 1 4 4 C 1.53193 * 109.49482 * 120.06806 * 2 1 3 5 5 N 1.46929 * 108.77262 * 174.58514 * 4 2 1 6 6 C 1.34775 * 120.63080 * 126.36649 * 5 4 2 7 7 O 1.21604 * 119.99983 * 4.20791 * 6 5 4 8 8 C 1.47448 * 120.00007 * 184.21246 * 6 5 4 9 9 C 1.38953 * 121.16772 * 305.99019 * 8 6 5 10 10 N 1.32194 * 121.31549 * 180.02562 * 9 8 6 11 11 C 1.31189 * 123.69896 * 359.97438 * 10 9 8 12 12 C 1.40389 * 120.91337 * 359.97438 * 11 10 9 13 13 C 1.40396 * 122.13497 * 180.02562 * 12 11 10 14 14 C 1.36221 * 119.48738 * 179.97438 * 13 12 11 15 15 C 1.39297 * 121.10108 * 359.97403 * 14 13 12 16 16 C 1.36440 * 120.94960 * 0.02562 * 15 14 13 17 17 C 1.39690 * 119.44041 * 0.02562 * 16 15 14 18 18 C 1.46926 * 118.73798 * 306.64151 * 5 4 2 19 19 C 1.52759 * 109.01022 * 53.31251 * 18 5 4 20 20 C 1.53037 * 109.49728 * 239.90249 * 2 1 3 21 21 H 1.09000 * 109.45817 * 58.67602 * 20 2 1 22 22 N 1.46498 * 109.46088 * 298.70811 * 20 2 1 23 23 C 1.36939 * 120.00149 * 154.99797 * 22 20 2 24 24 H 1.08004 * 119.99944 * 0.02562 * 23 22 20 25 25 C 1.38807 * 120.00114 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00233 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00162 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47495 * 60.00226 * 27 25 23 29 29 H 1.48499 * 109.47477 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47066 * 300.00056 * 27 25 23 31 31 H 1.09004 * 109.46644 * 299.93622 * 1 2 3 32 32 H 1.08996 * 109.46859 * 59.92998 * 1 2 3 33 33 H 1.08993 * 109.46986 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.58912 * 54.80115 * 4 2 1 35 35 H 1.09001 * 109.70198 * 294.43323 * 4 2 1 36 36 H 1.07998 * 119.34196 * 359.97438 * 9 8 6 37 37 H 1.08002 * 119.54734 * 180.02562 * 11 10 9 38 38 H 1.08001 * 120.25815 * 359.95455 * 13 12 11 39 39 H 1.08002 * 119.45609 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.52270 * 180.02562 * 15 14 13 41 41 H 1.08004 * 120.28185 * 179.74374 * 16 15 14 42 42 H 1.09004 * 109.58207 * 173.14270 * 18 5 4 43 43 H 1.08997 * 109.58934 * 293.57011 * 18 5 4 44 44 H 1.08993 * 109.56560 * 185.55368 * 19 18 5 45 45 H 1.09004 * 109.38917 * 65.51185 * 19 18 5 46 46 H 0.97003 * 120.00150 * 334.99645 * 22 20 2 47 47 H 0.96995 * 120.00330 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 3.5046 -0.8289 1.1698 6 6 4.2812 -0.3851 2.1780 7 8 3.7710 0.0377 3.1976 8 6 5.7493 -0.4122 2.0445 9 6 6.4201 -1.5837 1.7154 10 7 7.7363 -1.6114 1.5955 11 6 8.5054 -0.5633 1.7714 12 6 7.9577 0.6851 2.1066 13 6 8.7564 1.8234 2.3002 14 6 8.1677 3.0085 2.6238 15 6 6.7857 3.1104 2.7654 16 6 5.9798 2.0244 2.5844 17 6 6.5507 0.7934 2.2529 18 6 4.1055 -1.4217 -0.0328 19 6 3.5709 -0.6954 -1.2658 20 6 2.0408 -0.7234 -1.2481 21 1 1.6583 -0.2249 -2.1388 22 7 1.5783 -2.1134 -1.2302 23 6 1.4480 -2.8068 -2.4039 24 1 1.6867 -2.3292 -3.3427 25 6 1.0103 -4.1239 -2.3869 26 7 0.7199 -4.7063 -1.2428 27 14 0.8333 -5.0701 -3.9877 28 1 2.1503 -5.1387 -4.6705 29 1 0.3526 -6.4453 -3.6995 30 1 -0.1442 -4.3785 -4.8660 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5149 -0.8893 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6053 -1.7212 1.2984 35 1 1.7638 -0.1595 2.1403 36 1 5.8549 -2.4900 1.5551 37 1 9.5747 -0.6619 1.6560 38 1 9.8293 1.7599 2.1938 39 1 8.7826 3.8839 2.7722 40 1 6.3459 4.0628 3.0221 41 1 4.9099 2.1148 2.7010 42 1 5.1895 -1.3160 0.0104 43 1 3.8412 -2.4775 -0.0909 44 1 3.9334 -1.1903 -2.1667 45 1 3.9160 0.3385 -1.2548 46 1 1.3643 -2.5425 -0.3870 47 1 0.4136 -5.6265 -1.2309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036301959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:54 Heat of formation + Delta-G solvation = 18.730353 kcal Electronic energy + Delta-G solvation = -29810.654606 eV Core-core repulsion = 25957.699043 eV Total energy + Delta-G solvation = -3852.955562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.13307 -40.92767 -39.11768 -38.37123 -35.94374 -34.69520 -33.70423 -33.02621 -32.19775 -31.01422 -30.83165 -27.81184 -26.90922 -25.59842 -25.14582 -24.52851 -23.60637 -23.11564 -21.14297 -19.82980 -19.36063 -19.18028 -18.51109 -18.18064 -17.32434 -16.90406 -16.62842 -16.15797 -15.95060 -15.75315 -15.63219 -15.32425 -15.14337 -14.92924 -14.85558 -14.60249 -14.32319 -14.18712 -13.74489 -13.59703 -13.26218 -13.03089 -12.95807 -12.90693 -12.83223 -12.70113 -12.45660 -12.25692 -12.17307 -12.01582 -11.94778 -11.60892 -11.37619 -11.19436 -11.06143 -10.84932 -10.47277 -10.10093 -9.73231 -9.13732 -8.93614 -7.89029 -5.15735 -0.88230 -0.15965 0.68045 1.45488 1.49699 1.50742 1.56614 1.82985 2.05902 2.59429 2.98429 3.15901 3.39611 3.44573 3.50498 3.68234 3.76364 3.82996 3.87498 3.89399 3.99747 4.04421 4.24150 4.26917 4.28757 4.33697 4.44198 4.52276 4.55377 4.59854 4.66531 4.71776 4.79975 4.90524 4.98461 5.01649 5.03927 5.09421 5.15743 5.21209 5.24988 5.39227 5.43194 5.46210 5.50386 5.56237 5.59824 5.86732 6.25676 6.32377 6.81686 6.92801 7.40104 8.15281 8.39376 9.33955 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.003200 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.605053 B = 8749.177447 C = 9619.309744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.124 3.876 5 N -0.589 5.589 6 C 0.567 3.433 7 O -0.573 6.573 8 C -0.186 4.186 9 C 0.114 3.886 10 N -0.517 5.517 11 C 0.182 3.818 12 C -0.132 4.132 13 C -0.069 4.069 14 C -0.121 4.121 15 C -0.080 4.080 16 C -0.140 4.140 17 C -0.009 4.009 18 C 0.117 3.883 19 C -0.141 4.141 20 C 0.174 3.826 21 H 0.051 0.949 22 N -0.724 5.724 23 C -0.229 4.229 24 H 0.075 0.925 25 C -0.072 4.072 26 N -0.969 5.969 27 Si 0.964 3.036 28 H -0.280 1.280 29 H -0.302 1.302 30 H -0.281 1.281 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.210 0.790 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.374 0.626 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.872 17.929 6.479 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.104 0.896 4 C 0.001 3.999 5 N -0.320 5.320 6 C 0.356 3.644 7 O -0.454 6.454 8 C -0.191 4.191 9 C -0.029 4.029 10 N -0.225 5.225 11 C 0.010 3.990 12 C -0.134 4.134 13 C -0.089 4.089 14 C -0.139 4.139 15 C -0.099 4.099 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.005 4.005 19 C -0.182 4.182 20 C 0.066 3.934 21 H 0.069 0.931 22 N -0.365 5.365 23 C -0.361 4.361 24 H 0.093 0.907 25 C -0.264 4.264 26 N -0.620 5.620 27 Si 0.794 3.206 28 H -0.206 1.206 29 H -0.229 1.229 30 H -0.208 1.208 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.170 0.830 37 H 0.227 0.773 38 H 0.196 0.804 39 H 0.184 0.816 40 H 0.169 0.831 41 H 0.131 0.869 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.207 0.793 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.796 17.223 6.584 25.625 hybrid contribution -1.415 -0.743 -0.313 1.629 sum 16.380 16.480 6.271 24.067 Atomic orbital electron populations 1.21595 0.93651 1.01647 1.01945 1.21628 0.96867 0.99227 0.93993 0.89604 1.21591 0.78400 1.00666 0.99213 1.48077 1.07021 1.58966 1.17893 1.18198 0.86621 0.76905 0.82695 1.90734 1.75639 1.49361 1.29643 1.21764 0.92955 0.96472 1.07912 1.22719 0.90646 0.96383 0.93129 1.67199 1.05646 1.33160 1.16449 1.24025 1.01619 0.85636 0.87687 1.19278 0.92184 0.97707 1.04270 1.21489 1.01480 0.90282 0.95631 1.21408 0.94372 0.99469 0.98619 1.21453 0.94585 0.98614 0.95232 1.20970 1.00586 0.92465 1.01781 1.19051 0.93151 0.92469 0.96735 1.21708 0.97851 0.97350 0.83569 1.22320 0.98880 0.99870 0.97084 1.20413 0.91770 0.85343 0.95925 0.93131 1.42573 1.79058 1.09208 1.05669 1.19527 1.34990 0.93914 0.87663 0.90690 1.25389 1.03481 0.98394 0.99141 1.69793 1.53702 1.12918 1.25551 0.85351 0.77834 0.77387 0.80010 1.20597 1.22876 1.20770 0.91551 0.91981 0.94043 0.92707 0.89502 0.82966 0.77325 0.80396 0.81570 0.83115 0.86947 0.89306 0.92239 0.91390 0.91183 0.79271 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.05 71.98 0.65 -3.46 16 2 C -0.10 -3.14 2.67 -10.72 -0.03 -3.17 16 3 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.12 4.32 5.41 86.36 0.47 4.78 16 5 N -0.59 -20.15 2.98 -823.59 -2.45 -22.60 16 6 C 0.57 19.81 6.65 86.67 0.58 20.38 16 7 O -0.57 -22.88 15.45 -4.04 -0.06 -22.94 16 8 C -0.19 -5.65 5.06 -18.60 -0.09 -5.74 16 9 C 0.11 3.29 8.63 84.81 0.73 4.02 16 10 N -0.52 -13.07 10.22 -193.73 -1.98 -15.05 16 11 C 0.18 3.26 11.00 85.31 0.94 4.20 16 12 C -0.13 -2.52 5.74 -21.33 -0.12 -2.64 16 13 C -0.07 -0.77 9.82 22.33 0.22 -0.55 16 14 C -0.12 -1.29 9.94 22.05 0.22 -1.07 16 15 C -0.08 -1.26 9.96 22.10 0.22 -1.04 16 16 C -0.14 -3.38 9.37 22.20 0.21 -3.17 16 17 C -0.01 -0.23 5.90 -19.95 -0.12 -0.35 16 18 C 0.12 3.95 5.27 86.22 0.45 4.41 16 19 C -0.14 -4.67 5.76 30.53 0.18 -4.50 16 20 C 0.17 6.44 2.53 45.02 0.11 6.56 16 21 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 22 N -0.72 -33.82 3.64 -322.81 -1.18 -35.00 16 23 C -0.23 -12.01 9.93 84.03 0.83 -11.17 16 24 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 25 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 26 N -0.97 -57.98 13.06 21.65 0.28 -57.70 16 27 Si 0.96 45.42 29.55 68.60 2.03 47.45 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 29 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 30 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.56 7.53 -2.39 -0.02 1.54 16 34 H 0.05 2.18 6.64 -2.39 -0.02 2.16 16 35 H 0.09 3.00 7.03 -2.39 -0.02 2.98 16 36 H 0.15 4.47 7.37 -2.91 -0.02 4.45 16 37 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 40 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.11 3.16 6.77 -2.91 -0.02 3.14 16 42 H 0.09 2.71 4.74 -2.38 -0.01 2.70 16 43 H 0.06 2.36 7.74 -2.39 -0.02 2.35 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.37 19.10 5.92 -92.71 -0.55 18.55 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -70.96 375.33 3.00 -67.96 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.45 Total: 33.91 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.92 Total: 3.98 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.33 Total: -130.35 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.06 Total: -22.94 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -70.96 3.00 -67.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036301959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.686 kcal (2) G-P(sol) polarization free energy of solvation -70.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds