Wall clock time and date at job start Tue Mar 31 2020 22:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58443 * 2 1 4 4 C 1.53195 * 109.58984 * 239.71559 * 2 1 3 5 5 C 1.53042 * 109.31295 * 185.57944 * 4 2 1 6 6 H 1.09004 * 109.45507 * 301.35744 * 5 4 2 7 7 N 1.46502 * 109.45750 * 181.38701 * 5 4 2 8 8 C 1.36929 * 119.99993 * 154.97257 * 7 5 4 9 9 H 1.08010 * 120.00199 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00217 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00261 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47217 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47298 * 239.99588 * 12 10 8 15 15 H 1.48501 * 109.47209 * 119.99294 * 12 10 8 16 16 C 1.53038 * 109.52525 * 61.37295 * 5 4 2 17 17 C 1.53191 * 109.31382 * 298.61139 * 16 5 4 18 18 N 1.46928 * 108.76734 * 54.65836 * 17 16 5 19 19 C 1.34772 * 120.63091 * 126.35691 * 18 17 16 20 20 O 1.21608 * 119.99887 * 185.25938 * 19 18 17 21 21 C 1.47427 * 120.00216 * 5.26588 * 19 18 17 22 22 C 1.38747 * 120.33356 * 30.38048 * 21 19 18 23 23 C 1.38870 * 120.72721 * 179.97438 * 22 21 19 24 24 C 1.36344 * 121.05800 * 359.96056 * 23 22 21 25 25 C 1.40447 * 120.08570 * 0.02562 * 24 23 22 26 26 C 1.40806 * 121.26556 * 179.97438 * 25 24 23 27 27 C 1.36631 * 118.14980 * 179.97438 * 26 25 24 28 28 C 1.39237 * 119.91311 * 0.02562 * 27 26 25 29 29 N 1.31231 * 121.69128 * 359.97438 * 28 27 26 30 30 C 1.33348 * 121.35394 * 359.79166 * 29 28 27 31 31 H 1.08999 * 109.47104 * 183.75439 * 1 2 3 32 32 H 1.09000 * 109.47132 * 303.75519 * 1 2 3 33 33 H 1.09002 * 109.47040 * 63.75553 * 1 2 3 34 34 H 1.09005 * 109.49413 * 65.62345 * 4 2 1 35 35 H 1.09002 * 109.49554 * 305.53421 * 4 2 1 36 36 H 0.96998 * 119.99592 * 334.97366 * 7 5 4 37 37 H 0.96997 * 119.99984 * 0.02562 * 11 10 8 38 38 H 1.08998 * 109.49916 * 58.58021 * 16 5 4 39 39 H 1.09006 * 109.49466 * 178.67771 * 16 5 4 40 40 H 1.09006 * 109.60100 * 294.87117 * 17 16 5 41 41 H 1.09000 * 109.70633 * 174.50831 * 17 16 5 42 42 H 1.08008 * 119.63788 * 359.97438 * 22 21 19 43 43 H 1.08002 * 119.47205 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.96019 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.92878 * 0.02562 * 26 25 24 46 46 H 1.07997 * 120.04687 * 180.02562 * 27 26 25 47 47 H 1.07997 * 119.15636 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8465 -1.1711 6 1 4.0061 0.1488 -1.0988 7 7 4.0653 -1.5128 -2.3772 8 6 5.3495 -1.2948 -2.7992 9 1 5.9955 -0.6314 -2.2432 10 6 5.8210 -1.9256 -3.9423 11 7 5.0337 -2.7337 -4.6202 12 14 7.5732 -1.6288 -4.5177 13 1 8.2466 -0.6865 -3.5881 14 1 7.5539 -1.0469 -5.8837 15 1 8.3122 -2.9168 -4.5387 16 6 3.9566 -1.6660 0.0615 17 6 3.4650 -0.9486 1.3226 18 7 2.0225 -0.7010 1.1937 19 6 1.1673 -1.1097 2.1518 20 8 -0.0315 -0.9849 1.9903 21 6 1.6851 -1.7078 3.3958 22 6 2.9205 -1.3234 3.8969 23 6 3.4159 -1.8811 5.0682 24 6 2.7043 -2.8183 5.7568 25 6 1.4491 -3.2361 5.2852 26 6 0.6934 -4.2026 5.9762 27 6 -0.5198 -4.5618 5.4606 28 6 -0.9750 -3.9749 4.2828 29 7 -0.2667 -3.0745 3.6427 30 6 0.9230 -2.6771 4.0955 31 1 -0.3633 -1.0255 0.0673 32 1 -0.3633 0.5710 0.8544 33 1 -0.3633 0.4544 -0.9217 34 1 1.7660 -0.1641 -2.1370 35 1 1.6030 -1.7237 -1.2935 36 1 3.4850 -2.1083 -2.8767 37 1 4.1240 -2.8881 -4.3213 38 1 3.4978 -2.6529 0.0018 39 1 5.0409 -1.7701 0.1017 40 1 3.9903 0.0003 1.4318 41 1 3.6519 -1.5724 2.1967 42 1 3.5033 -0.5821 3.3701 43 1 4.3802 -1.5672 5.4398 44 1 3.1064 -3.2401 6.6662 45 1 1.0621 -4.6470 6.8888 46 1 -1.1250 -5.2999 5.9658 47 1 -1.9360 -4.2675 3.8864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044663535.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:04 Heat of formation + Delta-G solvation = 69.133634 kcal Electronic energy + Delta-G solvation = -29559.020066 eV Core-core repulsion = 25708.250154 eV Total energy + Delta-G solvation = -3850.769912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.36185 -40.06256 -37.39995 -37.23957 -34.69639 -34.00046 -32.63808 -32.01943 -30.83094 -30.16035 -28.96411 -27.00556 -24.99994 -24.09855 -24.03917 -23.40032 -22.82507 -21.50906 -20.24242 -19.21572 -18.67110 -17.34290 -17.15927 -17.06915 -16.23914 -15.75863 -15.39508 -15.04519 -14.80131 -14.39417 -14.31210 -14.24251 -14.02258 -13.64269 -13.60288 -13.31910 -13.23604 -13.07742 -12.58309 -12.43285 -12.20550 -11.97651 -11.86214 -11.77106 -11.42455 -11.25347 -10.82409 -10.77916 -10.73161 -10.52587 -10.35710 -10.06185 -10.02411 -9.68175 -9.19315 -9.06732 -8.88782 -8.83078 -8.51548 -8.31691 -7.03620 -6.10199 -3.10244 -0.08235 0.53006 1.52198 2.51453 2.95537 3.18678 3.50488 3.57478 3.66392 3.91359 4.02376 4.21026 4.43422 4.46592 4.59356 4.64711 4.66975 4.78382 4.95154 5.02118 5.09763 5.15261 5.25248 5.32419 5.39674 5.48047 5.53926 5.57944 5.62808 5.65681 5.71861 5.80207 5.89222 5.89928 6.00766 6.03439 6.11620 6.17624 6.18213 6.35643 6.43979 6.45613 6.48750 6.54686 6.76635 6.89407 7.01587 7.56527 7.78319 7.80659 8.38869 8.75597 9.22785 10.09250 10.24848 11.38296 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.002849 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.905210 B = 9824.108323 C =10466.435235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.151 3.849 3 H 0.071 0.929 4 C -0.136 4.136 5 C 0.185 3.815 6 H 0.048 0.952 7 N -0.736 5.736 8 C -0.330 4.330 9 H 0.065 0.935 10 C -0.046 4.046 11 N -0.945 5.945 12 Si 1.085 2.915 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.150 4.150 17 C 0.086 3.914 18 N -0.600 5.600 19 C 0.558 3.442 20 O -0.504 6.504 21 C -0.104 4.104 22 C -0.075 4.075 23 C -0.125 4.125 24 C -0.076 4.076 25 C -0.112 4.112 26 C -0.058 4.058 27 C -0.177 4.177 28 C 0.132 3.868 29 N -0.445 5.445 30 C 0.163 3.837 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.366 0.634 37 H 0.256 0.744 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 0.358 25.111 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.175 4.175 5 C 0.075 3.925 6 H 0.066 0.934 7 N -0.377 5.377 8 C -0.461 4.461 9 H 0.083 0.917 10 C -0.244 4.244 11 N -0.590 5.590 12 Si 0.916 3.084 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.221 1.221 16 C -0.191 4.191 17 C -0.036 4.036 18 N -0.334 5.334 19 C 0.346 3.654 20 O -0.379 6.379 21 C -0.108 4.108 22 C -0.095 4.095 23 C -0.143 4.143 24 C -0.095 4.095 25 C -0.114 4.114 26 C -0.084 4.084 27 C -0.196 4.196 28 C -0.040 4.040 29 N -0.152 5.152 30 C 0.040 3.960 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.167 0.833 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.181 0.658 23.110 24.208 hybrid contribution -0.750 -0.359 1.873 2.049 sum -7.931 0.298 24.982 26.212 Atomic orbital electron populations 1.22209 0.92701 1.03889 1.00313 1.21281 0.95547 0.94770 0.83615 0.91141 1.22317 0.97492 1.00974 0.96736 1.20102 0.90818 0.94901 0.86728 0.93363 1.42456 1.13047 1.54890 1.27342 1.20085 0.89620 1.26301 1.10128 0.91700 1.25762 1.06264 0.97671 0.94667 1.70805 1.08219 1.38486 1.41505 0.83159 0.74228 0.75485 0.75526 1.22133 1.22038 1.22062 1.22653 1.01635 0.99968 0.94833 1.22522 0.79944 1.00621 1.00557 1.48073 1.07415 1.57583 1.20372 1.17906 0.86247 0.78575 0.82696 1.90860 1.14647 1.53883 1.78539 1.19986 0.94860 0.98870 0.97059 1.21925 0.93633 0.98837 0.95117 1.20891 1.00768 0.97519 0.95116 1.21149 0.92786 0.96163 0.99365 1.18824 0.96600 0.99269 0.96688 1.21458 0.93837 0.94412 0.98711 1.21944 0.97432 1.02075 0.98194 1.23139 0.99002 0.90704 0.91196 1.68201 1.04726 1.10942 1.31304 1.18567 0.91279 0.94725 0.91451 0.90883 0.91394 0.94014 0.90757 0.91906 0.80042 0.93267 0.92396 0.90636 0.91251 0.88868 0.83263 0.84662 0.84893 0.84279 0.84446 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.59 37.16 0.28 -1.79 16 2 C 0.15 2.32 3.49 -67.60 -0.24 2.08 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.38 4.84 -26.61 -0.13 -2.51 16 5 C 0.18 3.65 2.73 -67.89 -0.19 3.46 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.74 -18.37 5.12 -53.38 -0.27 -18.65 16 8 C -0.33 -9.17 9.93 -15.06 -0.15 -9.32 16 9 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 10 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 11 N -0.94 -29.37 13.70 55.49 0.76 -28.61 16 12 Si 1.08 25.93 29.92 -169.99 -5.09 20.84 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 C -0.15 -2.62 5.66 -26.61 -0.15 -2.77 16 17 C 0.09 1.17 4.72 -3.71 -0.02 1.15 16 18 N -0.60 -9.01 2.97 -166.47 -0.49 -9.51 16 19 C 0.56 8.97 7.26 -12.52 -0.09 8.88 16 20 O -0.50 -9.26 11.18 5.27 0.06 -9.20 16 21 C -0.10 -1.45 5.49 -104.62 -0.57 -2.02 16 22 C -0.08 -0.79 7.37 -39.16 -0.29 -1.07 16 23 C -0.13 -1.03 9.93 -40.03 -0.40 -1.43 16 24 C -0.08 -0.62 9.75 -39.43 -0.38 -1.01 16 25 C -0.11 -1.19 5.74 -106.82 -0.61 -1.80 16 26 C -0.06 -0.47 9.90 -39.19 -0.39 -0.86 16 27 C -0.18 -1.41 10.03 -39.79 -0.40 -1.81 16 28 C 0.13 1.42 11.15 -17.44 -0.19 1.22 16 29 N -0.45 -6.59 8.86 -10.76 -0.10 -6.69 16 30 C 0.16 2.27 6.58 -84.58 -0.56 1.72 16 31 H 0.07 1.28 6.73 -51.93 -0.35 0.93 16 32 H 0.07 1.08 6.76 -51.93 -0.35 0.73 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.37 9.62 6.63 -40.82 -0.27 9.35 16 37 H 0.26 7.88 6.77 -40.82 -0.28 7.60 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 41 H 0.09 1.11 4.09 -51.93 -0.21 0.90 16 42 H 0.15 1.34 5.43 -52.48 -0.28 1.06 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 47 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -35.56 370.23 -10.56 -46.12 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.44 Total: 9.41 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -4.57 Total: -9.30 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -0.10 Total: -63.45 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.09 Total: 20.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.56 -10.56 -46.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044663535.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.252 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds