Wall clock time and date at job start Tue Mar 31 2020 22:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58443 * 2 1 4 4 C 1.53195 * 109.58984 * 239.71559 * 2 1 3 5 5 C 1.53042 * 109.31295 * 185.57944 * 4 2 1 6 6 H 1.09004 * 109.45507 * 301.35744 * 5 4 2 7 7 N 1.46502 * 109.45750 * 181.38701 * 5 4 2 8 8 C 1.36929 * 119.99993 * 154.97257 * 7 5 4 9 9 H 1.08010 * 120.00199 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00217 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00261 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47217 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47298 * 239.99588 * 12 10 8 15 15 H 1.48501 * 109.47209 * 119.99294 * 12 10 8 16 16 C 1.53038 * 109.52525 * 61.37295 * 5 4 2 17 17 C 1.53191 * 109.31382 * 298.61139 * 16 5 4 18 18 N 1.46928 * 108.76734 * 54.65836 * 17 16 5 19 19 C 1.34772 * 120.63091 * 126.35691 * 18 17 16 20 20 O 1.21608 * 119.99887 * 185.25938 * 19 18 17 21 21 C 1.47427 * 120.00216 * 5.26588 * 19 18 17 22 22 C 1.38747 * 120.33356 * 30.38048 * 21 19 18 23 23 C 1.38870 * 120.72721 * 179.97438 * 22 21 19 24 24 C 1.36344 * 121.05800 * 359.96056 * 23 22 21 25 25 C 1.40447 * 120.08570 * 0.02562 * 24 23 22 26 26 C 1.40806 * 121.26556 * 179.97438 * 25 24 23 27 27 C 1.36631 * 118.14980 * 179.97438 * 26 25 24 28 28 C 1.39237 * 119.91311 * 0.02562 * 27 26 25 29 29 N 1.31231 * 121.69128 * 359.97438 * 28 27 26 30 30 C 1.33348 * 121.35394 * 359.79166 * 29 28 27 31 31 H 1.08999 * 109.47104 * 183.75439 * 1 2 3 32 32 H 1.09000 * 109.47132 * 303.75519 * 1 2 3 33 33 H 1.09002 * 109.47040 * 63.75553 * 1 2 3 34 34 H 1.09005 * 109.49413 * 65.62345 * 4 2 1 35 35 H 1.09002 * 109.49554 * 305.53421 * 4 2 1 36 36 H 0.96998 * 119.99592 * 334.97366 * 7 5 4 37 37 H 0.96997 * 119.99984 * 0.02562 * 11 10 8 38 38 H 1.08998 * 109.49916 * 58.58021 * 16 5 4 39 39 H 1.09006 * 109.49466 * 178.67771 * 16 5 4 40 40 H 1.09006 * 109.60100 * 294.87117 * 17 16 5 41 41 H 1.09000 * 109.70633 * 174.50831 * 17 16 5 42 42 H 1.08008 * 119.63788 * 359.97438 * 22 21 19 43 43 H 1.08002 * 119.47205 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.96019 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.92878 * 0.02562 * 26 25 24 46 46 H 1.07997 * 120.04687 * 180.02562 * 27 26 25 47 47 H 1.07997 * 119.15636 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8465 -1.1711 6 1 4.0061 0.1488 -1.0988 7 7 4.0653 -1.5128 -2.3772 8 6 5.3495 -1.2948 -2.7992 9 1 5.9955 -0.6314 -2.2432 10 6 5.8210 -1.9256 -3.9423 11 7 5.0337 -2.7337 -4.6202 12 14 7.5732 -1.6288 -4.5177 13 1 8.2466 -0.6865 -3.5881 14 1 7.5539 -1.0469 -5.8837 15 1 8.3122 -2.9168 -4.5387 16 6 3.9566 -1.6660 0.0615 17 6 3.4650 -0.9486 1.3226 18 7 2.0225 -0.7010 1.1937 19 6 1.1673 -1.1097 2.1518 20 8 -0.0315 -0.9849 1.9903 21 6 1.6851 -1.7078 3.3958 22 6 2.9205 -1.3234 3.8969 23 6 3.4159 -1.8811 5.0682 24 6 2.7043 -2.8183 5.7568 25 6 1.4491 -3.2361 5.2852 26 6 0.6934 -4.2026 5.9762 27 6 -0.5198 -4.5618 5.4606 28 6 -0.9750 -3.9749 4.2828 29 7 -0.2667 -3.0745 3.6427 30 6 0.9230 -2.6771 4.0955 31 1 -0.3633 -1.0255 0.0673 32 1 -0.3633 0.5710 0.8544 33 1 -0.3633 0.4544 -0.9217 34 1 1.7660 -0.1641 -2.1370 35 1 1.6030 -1.7237 -1.2935 36 1 3.4850 -2.1083 -2.8767 37 1 4.1240 -2.8881 -4.3213 38 1 3.4978 -2.6529 0.0018 39 1 5.0409 -1.7701 0.1017 40 1 3.9903 0.0003 1.4318 41 1 3.6519 -1.5724 2.1967 42 1 3.5033 -0.5821 3.3701 43 1 4.3802 -1.5672 5.4398 44 1 3.1064 -3.2401 6.6662 45 1 1.0621 -4.6470 6.8888 46 1 -1.1250 -5.2999 5.9658 47 1 -1.9360 -4.2675 3.8864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044663535.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:03 Heat of formation + Delta-G solvation = 46.517319 kcal Electronic energy + Delta-G solvation = -29560.000784 eV Core-core repulsion = 25708.250154 eV Total energy + Delta-G solvation = -3851.750629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.25479 -41.12404 -38.74696 -38.08646 -36.43757 -34.90797 -33.90483 -33.59175 -31.55576 -31.19081 -30.54036 -28.45200 -26.07548 -25.59840 -24.90698 -24.67538 -23.98781 -22.71886 -21.69128 -20.36776 -19.40970 -19.34335 -18.09755 -17.89317 -17.21898 -16.94397 -16.77437 -16.34691 -16.04468 -15.72733 -15.40926 -15.31902 -15.15745 -15.03520 -14.85392 -14.57293 -14.22162 -13.96695 -13.82335 -13.50726 -13.43188 -13.21704 -12.95200 -12.85511 -12.71025 -12.55825 -12.43922 -12.23826 -12.08884 -11.92779 -11.82687 -11.66635 -11.44698 -11.20018 -10.89520 -10.52939 -9.97422 -9.77696 -9.62516 -9.26589 -9.11198 -8.38047 -5.32460 -0.81209 -0.18893 0.76267 1.58844 1.70740 1.73203 1.81747 1.85896 2.16322 2.72120 3.12015 3.28104 3.36549 3.41419 3.57987 3.71236 3.76128 3.82827 3.92452 3.95929 3.97930 4.03788 4.11763 4.17936 4.23499 4.40551 4.42617 4.50156 4.52287 4.59046 4.63030 4.65757 4.77492 4.88948 4.91516 4.93910 4.96401 5.07060 5.08489 5.17144 5.21388 5.33755 5.35694 5.40247 5.54761 5.61657 5.65931 5.83098 6.39424 6.48677 7.02277 7.08593 7.22363 7.98208 8.12707 9.13711 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.002849 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.905210 B = 9824.108323 C =10466.435235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.154 3.846 3 H 0.092 0.908 4 C -0.124 4.124 5 C 0.180 3.820 6 H 0.053 0.947 7 N -0.751 5.751 8 C -0.322 4.322 9 H 0.073 0.927 10 C -0.110 4.110 11 N -0.980 5.980 12 Si 1.133 2.867 13 H -0.266 1.266 14 H -0.294 1.294 15 H -0.294 1.294 16 C -0.139 4.139 17 C 0.095 3.905 18 N -0.603 5.603 19 C 0.553 3.447 20 O -0.540 6.540 21 C -0.150 4.150 22 C -0.064 4.064 23 C -0.130 4.130 24 C -0.059 4.059 25 C -0.131 4.131 26 C -0.050 4.050 27 C -0.177 4.177 28 C 0.119 3.881 29 N -0.507 5.507 30 C 0.132 3.868 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.355 0.645 37 H 0.242 0.758 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.164 0.836 43 H 0.174 0.826 44 H 0.175 0.825 45 H 0.182 0.818 46 H 0.174 0.826 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 0.740 28.952 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 H 0.110 0.890 4 C -0.163 4.163 5 C 0.072 3.928 6 H 0.071 0.929 7 N -0.392 5.392 8 C -0.453 4.453 9 H 0.091 0.909 10 C -0.301 4.301 11 N -0.629 5.629 12 Si 0.958 3.042 13 H -0.190 1.190 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.180 4.180 17 C -0.026 4.026 18 N -0.336 5.336 19 C 0.343 3.657 20 O -0.418 6.418 21 C -0.154 4.154 22 C -0.083 4.083 23 C -0.147 4.147 24 C -0.077 4.077 25 C -0.133 4.133 26 C -0.075 4.075 27 C -0.196 4.196 28 C -0.053 4.053 29 N -0.215 5.215 30 C 0.009 3.991 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.186 0.814 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.132 0.868 42 H 0.181 0.819 43 H 0.191 0.809 44 H 0.193 0.807 45 H 0.200 0.800 46 H 0.192 0.808 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.019 1.067 27.016 27.499 hybrid contribution -1.517 -0.526 0.814 1.800 sum -6.537 0.541 27.831 28.593 Atomic orbital electron populations 1.22010 0.92880 1.02126 1.00668 1.21240 0.95331 0.95441 0.82856 0.89005 1.22168 0.95995 1.00103 0.98033 1.20344 0.91909 0.94809 0.85757 0.92880 1.42721 1.12354 1.55147 1.28983 1.20443 0.90524 1.24900 1.09475 0.90900 1.27231 1.09586 0.97731 0.95524 1.70933 1.08070 1.40985 1.42907 0.82554 0.70217 0.75883 0.75564 1.19027 1.22139 1.22066 1.22440 1.01041 0.98741 0.95750 1.22607 0.79119 1.01998 0.98924 1.48127 1.07982 1.57505 1.20032 1.18397 0.85924 0.77843 0.83564 1.90823 1.16151 1.55224 1.79580 1.19941 0.97069 1.01282 0.97122 1.22171 0.92127 0.98280 0.95762 1.21320 1.02181 0.97160 0.94084 1.21676 0.91228 0.94816 1.00022 1.19191 0.98072 1.00037 0.96004 1.21992 0.93191 0.92955 0.99381 1.22280 0.98040 1.02229 0.97094 1.23578 0.99296 0.90132 0.92264 1.68119 1.06325 1.13360 1.33678 1.18897 0.91477 0.95629 0.93085 0.93654 0.91874 0.92718 0.91079 0.94032 0.81407 0.94790 0.94882 0.91187 0.88249 0.86762 0.81923 0.80876 0.80738 0.80042 0.80823 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 7.59 71.98 0.55 -3.31 16 2 C 0.15 4.79 3.49 44.97 0.16 4.94 16 3 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 4 C -0.12 -4.48 4.84 30.67 0.15 -4.33 16 5 C 0.18 7.16 2.73 45.02 0.12 7.28 16 6 H 0.05 2.08 8.08 -2.39 -0.02 2.06 16 7 N -0.75 -38.44 5.12 -322.81 -1.65 -40.09 16 8 C -0.32 -17.92 9.93 84.03 0.83 -17.09 16 9 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 10 C -0.11 -6.43 5.50 84.86 0.47 -5.97 16 11 N -0.98 -62.65 13.70 21.65 0.30 -62.35 16 12 Si 1.13 52.01 29.92 68.60 2.05 54.06 16 13 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 16 C -0.14 -4.84 5.66 30.67 0.17 -4.67 16 17 C 0.10 2.45 4.72 86.36 0.41 2.86 16 18 N -0.60 -18.16 2.97 -798.85 -2.37 -20.54 16 19 C 0.55 18.43 7.26 86.66 0.63 19.06 16 20 O -0.54 -21.21 11.18 -4.05 -0.05 -21.25 16 21 C -0.15 -4.20 5.49 -19.86 -0.11 -4.31 16 22 C -0.06 -1.19 7.37 22.54 0.17 -1.03 16 23 C -0.13 -1.61 9.93 21.98 0.22 -1.39 16 24 C -0.06 -0.72 9.75 22.37 0.22 -0.50 16 25 C -0.13 -2.50 5.74 -21.29 -0.12 -2.62 16 26 C -0.05 -0.64 9.90 22.52 0.22 -0.42 16 27 C -0.18 -2.48 10.03 22.13 0.22 -2.25 16 28 C 0.12 2.61 11.15 85.02 0.95 3.56 16 29 N -0.51 -15.87 8.86 -187.97 -1.67 -17.53 16 30 C 0.13 3.72 6.58 40.61 0.27 3.99 16 31 H 0.04 1.70 6.73 -2.39 -0.02 1.69 16 32 H 0.06 2.10 6.76 -2.39 -0.02 2.08 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.35 19.55 6.63 -92.71 -0.61 18.93 16 37 H 0.24 15.57 6.77 -92.71 -0.63 14.94 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.10 2.01 8.03 -2.38 -0.02 1.99 16 41 H 0.11 2.51 4.09 -2.39 -0.01 2.50 16 42 H 0.16 2.43 5.43 -2.91 -0.02 2.41 16 43 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 44 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 45 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 46 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 47 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -83.58 370.23 2.65 -80.92 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.53 Total: 32.97 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.52 Total: -6.19 kcal Atomic # 7 Polarization: -135.11 SS G_CDS: -5.40 Total: -140.51 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.05 Total: 54.06 kcal Total: -83.58 2.65 -80.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044663535.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.441 kcal (2) G-P(sol) polarization free energy of solvation -83.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds