Wall clock time and date at job start Tue Mar 31 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.69544 * 2 1 4 4 C 1.53192 * 109.58376 * 120.35154 * 2 1 3 5 5 C 1.53034 * 109.31548 * 65.15628 * 4 2 1 6 6 H 1.09004 * 109.46025 * 301.35480 * 5 4 2 7 7 N 1.46502 * 109.46329 * 181.38587 * 5 4 2 8 8 C 1.36931 * 120.00392 * 154.99927 * 7 5 4 9 9 H 1.08005 * 119.99933 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00157 * 179.97438 * 8 7 5 11 11 N 1.31621 * 120.00217 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99925 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47113 * 60.00236 * 12 10 8 14 14 H 1.48508 * 109.46801 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46908 * 299.99997 * 12 10 8 16 16 C 1.53038 * 109.53688 * 61.36077 * 5 4 2 17 17 C 1.53184 * 109.31733 * 298.63583 * 16 5 4 18 18 N 1.46924 * 109.58921 * 239.64086 * 2 1 3 19 19 C 1.34779 * 120.62925 * 113.81924 * 18 2 1 20 20 O 1.21590 * 120.00104 * 355.78323 * 19 18 2 21 21 C 1.47550 * 119.99819 * 175.77606 * 19 18 2 22 22 C 1.38695 * 120.38436 * 54.87080 * 21 19 18 23 23 C 1.38975 * 120.53273 * 179.97438 * 22 21 19 24 24 C 1.36205 * 121.23997 * 0.04289 * 23 22 21 25 25 C 1.40711 * 120.20298 * 359.95510 * 24 23 22 26 26 N 1.33682 * 120.95107 * 180.02562 * 25 24 23 27 27 C 1.31070 * 121.34118 * 179.21316 * 26 25 24 28 28 C 1.39342 * 121.70859 * 0.75538 * 27 26 25 29 29 C 1.36673 * 119.86613 * 359.49246 * 28 27 26 30 30 C 1.40475 * 118.16530 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47501 * 299.64599 * 1 2 3 32 32 H 1.09003 * 109.47089 * 59.65083 * 1 2 3 33 33 H 1.09007 * 109.47132 * 179.64969 * 1 2 3 34 34 H 1.09002 * 109.49781 * 185.11215 * 4 2 1 35 35 H 1.09007 * 109.49930 * 305.16894 * 4 2 1 36 36 H 0.96998 * 119.99542 * 334.99884 * 7 5 4 37 37 H 0.96993 * 119.99906 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.49536 * 58.59105 * 16 5 4 39 39 H 1.09007 * 109.49948 * 178.68460 * 16 5 4 40 40 H 1.08995 * 109.59420 * 174.42174 * 17 16 5 41 41 H 1.09001 * 109.58712 * 294.71118 * 17 16 5 42 42 H 1.07995 * 119.73548 * 359.97190 * 22 21 19 43 43 H 1.08001 * 119.38069 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.90092 * 179.97438 * 24 23 22 45 45 H 1.08011 * 119.14652 * 180.26946 * 27 26 25 46 46 H 1.08000 * 120.06504 * 179.47805 * 28 27 26 47 47 H 1.07994 * 120.91402 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 1.6415 -2.2040 1.1703 6 1 0.5565 -2.2815 1.0992 7 7 2.1023 -2.8976 2.3756 8 6 1.4650 -4.0337 2.7977 9 1 0.6223 -4.4183 2.2423 10 6 1.9020 -4.6912 3.9395 11 7 2.9292 -4.2229 4.6161 12 14 1.0330 -6.2415 4.5149 13 1 1.1117 -7.2763 3.4527 14 1 1.6882 -6.7475 5.7478 15 1 -0.3912 -5.9333 4.8012 16 6 2.2801 -2.8463 -0.0633 17 6 1.7693 -2.1411 -1.3235 18 7 2.0226 -0.6996 -1.1944 19 6 2.6941 -0.0317 -2.1533 20 8 2.8309 1.1738 -2.0725 21 6 3.2634 -0.7635 -3.3012 22 6 2.4570 -1.5747 -4.0857 23 6 2.9899 -2.2649 -5.1679 24 6 4.3103 -2.1667 -5.4875 25 6 5.1660 -1.3554 -4.7198 26 7 6.4642 -1.2478 -5.0204 27 6 7.2650 -0.4825 -4.3197 28 6 6.8091 0.2429 -3.2208 29 6 5.4933 0.1730 -2.8576 30 6 4.6378 -0.6411 -3.6183 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8869 33 1 -0.3634 -1.0277 -0.0063 34 1 3.1296 -0.6502 1.2915 35 1 1.6078 -0.2779 2.1370 36 1 2.8589 -2.5521 2.8747 37 1 3.2343 -4.6821 5.4141 38 1 3.3640 -2.7473 -0.0049 39 1 2.0124 -3.9022 -0.1034 40 1 2.2945 -2.5275 -2.1969 41 1 0.6993 -2.3178 -1.4329 42 1 1.4067 -1.6708 -3.8538 43 1 2.3449 -2.8910 -5.7665 44 1 4.7016 -2.7130 -6.3331 45 1 8.3070 -0.4184 -4.5966 46 1 7.4941 0.8589 -2.6571 47 1 5.1217 0.7284 -2.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044698700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:20 Heat of formation + Delta-G solvation = 36.807751 kcal Electronic energy + Delta-G solvation = -29578.516475 eV Core-core repulsion = 25726.344808 eV Total energy + Delta-G solvation = -3852.171668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.35594 -40.03868 -37.76480 -37.11979 -34.60374 -33.73045 -32.56943 -31.85910 -30.84043 -30.23663 -29.30213 -27.36111 -25.03714 -24.26654 -23.90773 -23.50749 -22.96236 -21.56170 -20.40328 -18.81394 -18.36435 -17.42982 -17.16974 -17.06059 -16.64050 -15.83603 -15.15688 -14.93738 -14.89538 -14.53728 -14.30410 -14.10771 -14.04490 -13.57613 -13.54282 -13.45161 -13.26024 -12.87270 -12.86592 -12.56673 -12.27977 -12.00573 -11.84174 -11.68909 -11.51565 -11.32581 -10.96263 -10.90811 -10.80546 -10.76152 -10.50623 -10.26566 -10.15350 -9.78319 -9.67341 -9.56487 -9.05469 -8.93445 -8.62419 -8.44046 -7.01892 -5.81195 -3.10667 -0.00540 0.56518 1.59471 2.45483 2.68505 3.00165 3.40020 3.44683 3.45863 3.86355 4.02086 4.20208 4.49151 4.53108 4.53856 4.60817 4.75266 4.86702 4.96257 5.04230 5.12691 5.17404 5.19470 5.28028 5.39969 5.50798 5.54760 5.56140 5.59342 5.69307 5.71754 5.76191 5.81817 5.84953 5.99982 6.02100 6.07458 6.13572 6.21425 6.24794 6.34912 6.40461 6.47684 6.51758 6.57459 6.83919 6.99633 7.38523 7.63791 7.64878 8.05344 8.36929 9.48130 10.05350 10.39887 11.41241 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.003026 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.239478 B = 9249.488390 C = 9734.395168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.096 0.904 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.096 3.904 18 N -0.589 5.589 19 C 0.560 3.440 20 O -0.540 6.540 21 C -0.095 4.095 22 C -0.083 4.083 23 C -0.105 4.105 24 C -0.076 4.076 25 C 0.124 3.876 26 N -0.476 5.476 27 C 0.134 3.866 28 C -0.174 4.174 29 C -0.047 4.047 30 C -0.069 4.069 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.383 0.617 37 H 0.256 0.744 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.161 0.839 46 H 0.140 0.860 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 7.974 -19.612 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.114 0.886 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.192 4.192 17 C -0.027 4.027 18 N -0.321 5.321 19 C 0.348 3.652 20 O -0.419 6.419 21 C -0.099 4.099 22 C -0.102 4.102 23 C -0.125 4.125 24 C -0.095 4.095 25 C 0.003 3.997 26 N -0.183 5.183 27 C -0.039 4.039 28 C -0.194 4.194 29 C -0.073 4.073 30 C -0.072 4.072 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.217 0.783 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.178 0.822 46 H 0.158 0.842 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.946 7.920 -20.218 21.801 hybrid contribution -0.422 -0.456 1.314 1.453 sum 1.524 7.465 -18.904 20.382 Atomic orbital electron populations 1.22140 0.94779 1.02858 1.02056 1.21251 0.94261 0.97028 0.83617 0.88578 1.22225 1.01345 0.97340 0.96344 1.20194 0.96802 0.89056 0.87057 0.93047 1.42420 1.37984 1.29331 1.26645 1.19171 1.10294 1.01194 1.06600 0.91240 1.24741 0.98438 0.99429 0.98167 1.69648 1.27483 1.41390 1.19483 0.86294 0.78836 0.83249 0.77947 1.21266 1.21696 1.21245 1.22678 1.01227 1.00563 0.94702 1.22118 1.01052 0.79121 1.00386 1.48208 1.54069 1.09793 1.19993 1.18158 0.78041 0.86874 0.82159 1.90782 1.59913 1.13629 1.77541 1.19893 0.93398 0.99236 0.97381 1.21406 1.00145 0.94168 0.94434 1.20829 0.95319 0.99355 0.96988 1.20944 0.92642 0.96934 0.98930 1.18799 0.90833 0.96590 0.93520 1.68050 1.03119 1.17930 1.29242 1.22998 0.99651 0.90550 0.90713 1.21967 0.96570 1.01720 0.99104 1.21646 0.93176 0.94436 0.98071 1.18543 0.93157 0.98642 0.96835 0.91172 0.92807 0.91563 0.91887 0.90370 0.78293 0.93420 0.92276 0.90571 0.89879 0.91127 0.84619 0.84455 0.84321 0.82174 0.84209 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.02 37.16 0.34 -1.61 16 2 C 0.14 1.96 3.19 -67.60 -0.22 1.74 16 3 H 0.10 1.39 7.03 -51.93 -0.36 1.03 16 4 C -0.13 -2.14 5.02 -26.61 -0.13 -2.27 16 5 C 0.18 3.29 2.52 -67.89 -0.17 3.12 16 6 H 0.05 0.95 6.44 -51.93 -0.33 0.62 16 7 N -0.72 -17.35 5.12 -53.39 -0.27 -17.63 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 12 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 C -0.15 -2.48 5.66 -26.62 -0.15 -2.63 16 17 C 0.10 1.23 5.14 -3.71 -0.02 1.21 16 18 N -0.59 -8.03 2.68 -166.44 -0.45 -8.47 16 19 C 0.56 8.11 6.47 -12.46 -0.08 8.03 16 20 O -0.54 -9.17 15.20 5.29 0.08 -9.09 16 21 C -0.10 -1.23 4.89 -104.66 -0.51 -1.74 16 22 C -0.08 -0.84 7.43 -39.14 -0.29 -1.13 16 23 C -0.11 -0.91 9.92 -40.04 -0.40 -1.31 16 24 C -0.08 -0.77 9.96 -39.38 -0.39 -1.16 16 25 C 0.12 1.56 6.60 -84.88 -0.56 0.99 16 26 N -0.48 -5.84 10.34 -10.99 -0.11 -5.96 16 27 C 0.13 1.34 11.15 -17.47 -0.19 1.15 16 28 C -0.17 -1.77 10.03 -39.74 -0.40 -2.16 16 29 C -0.05 -0.60 9.30 -39.31 -0.37 -0.97 16 30 C -0.07 -0.92 5.76 -106.53 -0.61 -1.53 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.82 5.73 -51.93 -0.30 0.52 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 36 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 0.96 4.77 -51.93 -0.25 0.71 16 41 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 42 H 0.14 1.12 7.40 -52.49 -0.39 0.73 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 45 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 46 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.14 1.92 6.51 -52.49 -0.34 1.57 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -32.55 375.16 -10.26 -42.81 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.46 Total: 10.03 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -4.41 Total: -7.26 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.11 Total: -58.96 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.55 -10.26 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.615 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds