Wall clock time and date at job start Tue Mar 31 2020 22:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.69544 * 2 1 4 4 C 1.53192 * 109.58376 * 120.35154 * 2 1 3 5 5 C 1.53034 * 109.31548 * 65.15628 * 4 2 1 6 6 H 1.09004 * 109.46025 * 301.35480 * 5 4 2 7 7 N 1.46502 * 109.46329 * 181.38587 * 5 4 2 8 8 C 1.36931 * 120.00392 * 154.99927 * 7 5 4 9 9 H 1.08005 * 119.99933 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00157 * 179.97438 * 8 7 5 11 11 N 1.31621 * 120.00217 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99925 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47113 * 60.00236 * 12 10 8 14 14 H 1.48508 * 109.46801 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46908 * 299.99997 * 12 10 8 16 16 C 1.53038 * 109.53688 * 61.36077 * 5 4 2 17 17 C 1.53184 * 109.31733 * 298.63583 * 16 5 4 18 18 N 1.46924 * 109.58921 * 239.64086 * 2 1 3 19 19 C 1.34779 * 120.62925 * 113.81924 * 18 2 1 20 20 O 1.21590 * 120.00104 * 355.78323 * 19 18 2 21 21 C 1.47550 * 119.99819 * 175.77606 * 19 18 2 22 22 C 1.38695 * 120.38436 * 54.87080 * 21 19 18 23 23 C 1.38975 * 120.53273 * 179.97438 * 22 21 19 24 24 C 1.36205 * 121.23997 * 0.04289 * 23 22 21 25 25 C 1.40711 * 120.20298 * 359.95510 * 24 23 22 26 26 N 1.33682 * 120.95107 * 180.02562 * 25 24 23 27 27 C 1.31070 * 121.34118 * 179.21316 * 26 25 24 28 28 C 1.39342 * 121.70859 * 0.75538 * 27 26 25 29 29 C 1.36673 * 119.86613 * 359.49246 * 28 27 26 30 30 C 1.40475 * 118.16530 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47501 * 299.64599 * 1 2 3 32 32 H 1.09003 * 109.47089 * 59.65083 * 1 2 3 33 33 H 1.09007 * 109.47132 * 179.64969 * 1 2 3 34 34 H 1.09002 * 109.49781 * 185.11215 * 4 2 1 35 35 H 1.09007 * 109.49930 * 305.16894 * 4 2 1 36 36 H 0.96998 * 119.99542 * 334.99884 * 7 5 4 37 37 H 0.96993 * 119.99906 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.49536 * 58.59105 * 16 5 4 39 39 H 1.09007 * 109.49948 * 178.68460 * 16 5 4 40 40 H 1.08995 * 109.59420 * 174.42174 * 17 16 5 41 41 H 1.09001 * 109.58712 * 294.71118 * 17 16 5 42 42 H 1.07995 * 119.73548 * 359.97190 * 22 21 19 43 43 H 1.08001 * 119.38069 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.90092 * 179.97438 * 24 23 22 45 45 H 1.08011 * 119.14652 * 180.26946 * 27 26 25 46 46 H 1.08000 * 120.06504 * 179.47805 * 28 27 26 47 47 H 1.07994 * 120.91402 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 1.6415 -2.2040 1.1703 6 1 0.5565 -2.2815 1.0992 7 7 2.1023 -2.8976 2.3756 8 6 1.4650 -4.0337 2.7977 9 1 0.6223 -4.4183 2.2423 10 6 1.9020 -4.6912 3.9395 11 7 2.9292 -4.2229 4.6161 12 14 1.0330 -6.2415 4.5149 13 1 1.1117 -7.2763 3.4527 14 1 1.6882 -6.7475 5.7478 15 1 -0.3912 -5.9333 4.8012 16 6 2.2801 -2.8463 -0.0633 17 6 1.7693 -2.1411 -1.3235 18 7 2.0226 -0.6996 -1.1944 19 6 2.6941 -0.0317 -2.1533 20 8 2.8309 1.1738 -2.0725 21 6 3.2634 -0.7635 -3.3012 22 6 2.4570 -1.5747 -4.0857 23 6 2.9899 -2.2649 -5.1679 24 6 4.3103 -2.1667 -5.4875 25 6 5.1660 -1.3554 -4.7198 26 7 6.4642 -1.2478 -5.0204 27 6 7.2650 -0.4825 -4.3197 28 6 6.8091 0.2429 -3.2208 29 6 5.4933 0.1730 -2.8576 30 6 4.6378 -0.6411 -3.6183 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8869 33 1 -0.3634 -1.0277 -0.0063 34 1 3.1296 -0.6502 1.2915 35 1 1.6078 -0.2779 2.1370 36 1 2.8589 -2.5521 2.8747 37 1 3.2343 -4.6821 5.4141 38 1 3.3640 -2.7473 -0.0049 39 1 2.0124 -3.9022 -0.1034 40 1 2.2945 -2.5275 -2.1969 41 1 0.6993 -2.3178 -1.4329 42 1 1.4067 -1.6708 -3.8538 43 1 2.3449 -2.8910 -5.7665 44 1 4.7016 -2.7130 -6.3331 45 1 8.3070 -0.4184 -4.5966 46 1 7.4941 0.8589 -2.6571 47 1 5.1217 0.7284 -2.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044698700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:19 Heat of formation + Delta-G solvation = 17.302988 kcal Electronic energy + Delta-G solvation = -29579.362265 eV Core-core repulsion = 25726.344808 eV Total energy + Delta-G solvation = -3853.017458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.27390 -41.09506 -39.01329 -37.96882 -36.26281 -34.63045 -33.90401 -33.38833 -31.62851 -31.32505 -30.75946 -28.64664 -26.17505 -25.62032 -24.79246 -24.68471 -24.17674 -22.88178 -21.56091 -19.89432 -19.46699 -18.94072 -18.27156 -18.03574 -17.72127 -16.88398 -16.72845 -16.12474 -15.74148 -15.63635 -15.44965 -15.30732 -15.23924 -15.04480 -14.91503 -14.44455 -14.23736 -14.14374 -14.06373 -13.69791 -13.22811 -13.04986 -13.00953 -12.87728 -12.78855 -12.61265 -12.45220 -12.35909 -12.21750 -12.09599 -11.96925 -11.70724 -11.63155 -11.22562 -11.11557 -10.86567 -10.49898 -9.84223 -9.76990 -9.31293 -8.99760 -7.92239 -5.21135 -0.83843 -0.23504 0.69234 1.46408 1.48936 1.51305 1.57191 1.77247 2.00594 2.57587 3.02332 3.22558 3.29884 3.41177 3.65936 3.72678 3.75574 3.81457 3.83780 3.95211 3.98486 4.06879 4.13652 4.22127 4.32327 4.38008 4.42467 4.51711 4.55042 4.61846 4.72482 4.73804 4.75271 4.82272 4.97112 4.99651 5.03204 5.03881 5.05463 5.23356 5.24729 5.28265 5.31224 5.46777 5.51376 5.53731 5.59682 5.76145 6.27169 6.29512 6.81933 6.95123 7.35101 8.10668 8.33573 9.31310 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.003026 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.239478 B = 9249.488390 C = 9734.395168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.176 3.824 6 H 0.059 0.941 7 N -0.738 5.738 8 C -0.235 4.235 9 H 0.081 0.919 10 C -0.077 4.077 11 N -0.973 5.973 12 Si 0.970 3.030 13 H -0.277 1.277 14 H -0.301 1.301 15 H -0.277 1.277 16 C -0.141 4.141 17 C 0.106 3.894 18 N -0.588 5.588 19 C 0.562 3.438 20 O -0.573 6.573 21 C -0.126 4.126 22 C -0.071 4.071 23 C -0.096 4.096 24 C -0.079 4.079 25 C 0.101 3.899 26 N -0.492 5.492 27 C 0.130 3.870 28 C -0.166 4.166 29 C -0.078 4.078 30 C -0.088 4.088 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.369 0.631 37 H 0.249 0.751 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.159 0.841 43 H 0.178 0.822 44 H 0.158 0.842 45 H 0.197 0.803 46 H 0.166 0.834 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 6.972 -22.171 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.162 4.162 5 C 0.068 3.932 6 H 0.077 0.923 7 N -0.377 5.377 8 C -0.367 4.367 9 H 0.099 0.901 10 C -0.269 4.269 11 N -0.624 5.624 12 Si 0.799 3.201 13 H -0.203 1.203 14 H -0.227 1.227 15 H -0.203 1.203 16 C -0.182 4.182 17 C -0.016 4.016 18 N -0.319 5.319 19 C 0.352 3.648 20 O -0.454 6.454 21 C -0.130 4.130 22 C -0.090 4.090 23 C -0.115 4.115 24 C -0.097 4.097 25 C -0.020 4.020 26 N -0.200 5.200 27 C -0.043 4.043 28 C -0.185 4.185 29 C -0.104 4.104 30 C -0.091 4.091 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.200 0.800 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.177 0.823 43 H 0.196 0.804 44 H 0.176 0.824 45 H 0.213 0.787 46 H 0.184 0.816 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.498 6.920 -22.831 23.862 hybrid contribution 0.071 -0.082 2.029 2.032 sum 0.569 6.838 -20.802 21.904 Atomic orbital electron populations 1.22085 0.92770 1.03225 1.03015 1.21156 0.95680 0.96197 0.82664 0.89351 1.22087 1.00271 0.96207 0.97682 1.20424 0.97134 0.89870 0.85787 0.92267 1.42664 1.37500 1.29229 1.28316 1.19603 1.09807 1.01298 1.05978 0.90111 1.25540 0.99632 1.02774 0.98963 1.69820 1.29547 1.42970 1.20024 0.85261 0.77901 0.79864 0.77045 1.20302 1.22741 1.20260 1.22464 0.99714 1.00340 0.95662 1.22126 1.02679 0.78070 0.98772 1.48226 1.53938 1.10062 1.19685 1.18442 0.77277 0.86550 0.82578 1.90752 1.60923 1.15208 1.78478 1.19848 0.93803 1.01312 0.98020 1.21772 1.00876 0.92514 0.93800 1.21244 0.95178 0.98726 0.96370 1.21299 0.93107 0.96307 0.99011 1.19175 0.91473 0.97428 0.93933 1.68104 1.03319 1.18695 1.29889 1.23597 1.01007 0.89562 0.90098 1.22294 0.95974 1.01217 0.99011 1.21675 0.94613 0.95682 0.98464 1.18742 0.93653 0.99231 0.97484 0.90465 0.91683 0.91354 0.93624 0.90671 0.80007 0.94237 0.94500 0.91364 0.88133 0.88403 0.82316 0.80448 0.82441 0.78655 0.81612 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.02 71.98 0.65 -2.76 16 2 C 0.15 3.99 3.19 44.98 0.14 4.13 16 3 H 0.09 2.59 7.03 -2.39 -0.02 2.58 16 4 C -0.12 -4.01 5.02 30.67 0.15 -3.86 16 5 C 0.18 6.43 2.52 45.02 0.11 6.54 16 6 H 0.06 2.10 6.44 -2.38 -0.02 2.08 16 7 N -0.74 -35.95 5.12 -322.82 -1.65 -37.60 16 8 C -0.24 -12.50 9.93 84.03 0.83 -11.67 16 9 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 10 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 11 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 12 Si 0.97 45.04 29.55 68.60 2.03 47.06 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 16 C -0.14 -4.56 5.66 30.67 0.17 -4.38 16 17 C 0.11 2.48 5.14 86.36 0.44 2.93 16 18 N -0.59 -15.51 2.68 -798.75 -2.14 -17.65 16 19 C 0.56 16.22 6.47 86.70 0.56 16.79 16 20 O -0.57 -19.97 15.20 -4.00 -0.06 -20.04 16 21 C -0.13 -3.15 4.89 -19.89 -0.10 -3.25 16 22 C -0.07 -1.24 7.43 22.56 0.17 -1.08 16 23 C -0.10 -1.32 9.92 21.97 0.22 -1.10 16 24 C -0.08 -1.41 9.96 22.40 0.22 -1.18 16 25 C 0.10 2.44 6.60 40.27 0.27 2.71 16 26 N -0.49 -11.58 10.34 -188.67 -1.95 -13.53 16 27 C 0.13 2.45 11.15 85.07 0.95 3.40 16 28 C -0.17 -3.32 10.03 22.17 0.22 -3.10 16 29 C -0.08 -2.07 9.30 22.45 0.21 -1.86 16 30 C -0.09 -2.36 5.76 -21.10 -0.12 -2.49 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.50 5.73 -2.38 -0.01 1.48 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.37 19.85 7.80 -92.71 -0.72 19.13 16 37 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.10 2.07 4.77 -2.39 -0.01 2.05 16 41 H 0.10 1.84 7.49 -2.39 -0.02 1.82 16 42 H 0.16 1.97 7.40 -2.91 -0.02 1.95 16 43 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 45 H 0.20 2.08 8.06 -2.90 -0.02 2.05 16 46 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 47 H 0.13 3.66 6.51 -2.91 -0.02 3.64 16 Total: -1.00 -73.11 375.16 2.36 -70.75 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.28 Total: 33.95 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.58 Total: -4.10 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -5.46 Total: -127.63 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.06 Total: -20.04 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.11 2.36 -70.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.052 kcal (2) G-P(sol) polarization free energy of solvation -73.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds