Wall clock time and date at job start Tue Mar 31 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.58526 * 2 1 4 4 C 1.53187 * 109.58824 * 239.56769 * 2 1 3 5 5 C 1.53042 * 109.31743 * 294.85016 * 4 2 1 6 6 H 1.09001 * 109.45450 * 58.65454 * 5 4 2 7 7 N 1.46499 * 109.45983 * 178.61323 * 5 4 2 8 8 C 1.36939 * 119.99935 * 205.00183 * 7 5 4 9 9 H 1.08001 * 119.99911 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00033 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99979 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47001 * 59.99533 * 12 10 8 14 14 H 1.48497 * 109.47203 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46821 * 299.99697 * 12 10 8 16 16 C 1.53038 * 109.53736 * 298.63438 * 5 4 2 17 17 C 1.52768 * 109.38014 * 61.23907 * 16 5 4 18 18 N 1.46929 * 109.00963 * 305.58452 * 17 16 5 19 19 C 1.34769 * 120.63154 * 233.58641 * 18 17 16 20 20 O 1.21538 * 120.00465 * 184.72980 * 19 18 17 21 21 C 1.47956 * 120.00005 * 4.73147 * 19 18 17 22 22 N 1.32198 * 120.15765 * 284.07543 * 21 19 18 23 23 C 1.32027 * 122.68027 * 180.02562 * 22 21 19 24 24 C 1.36684 * 122.03046 * 359.97438 * 23 22 21 25 25 C 1.40535 * 118.84984 * 0.02562 * 24 23 22 26 26 C 1.40318 * 122.22909 * 179.97438 * 25 24 23 27 27 C 1.36207 * 119.45612 * 180.02562 * 26 25 24 28 28 C 1.39376 * 120.99812 * 0.26737 * 27 26 25 29 29 C 1.36257 * 121.08645 * 359.43735 * 28 27 26 30 30 C 1.40093 * 119.53445 * 0.56280 * 29 28 27 31 31 H 1.08998 * 109.47422 * 299.71726 * 1 2 3 32 32 H 1.09007 * 109.47174 * 59.71980 * 1 2 3 33 33 H 1.09005 * 109.47261 * 179.71338 * 1 2 3 34 34 H 1.09001 * 109.49827 * 54.80321 * 4 2 1 35 35 H 1.09001 * 109.49942 * 174.86371 * 4 2 1 36 36 H 0.96997 * 120.00179 * 25.00131 * 7 5 4 37 37 H 0.96998 * 119.99530 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.49878 * 181.31558 * 16 5 4 39 39 H 1.08995 * 109.49898 * 301.41301 * 16 5 4 40 40 H 1.09004 * 109.50486 * 185.70379 * 17 16 5 41 41 H 1.08995 * 109.42977 * 65.42640 * 17 16 5 42 42 H 1.07994 * 118.98430 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.57824 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.27120 * 0.04463 * 26 25 24 45 45 H 1.07996 * 119.49418 * 179.97438 * 27 26 25 46 46 H 1.08004 * 119.46034 * 179.70539 * 28 27 26 47 47 H 1.08002 * 120.23588 * 180.28170 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 1.6415 -2.2057 -1.1673 6 1 0.5565 -2.2829 -1.0964 7 7 2.1024 -2.9008 -2.3716 8 6 1.4651 -4.0375 -2.7923 9 1 0.6229 -4.4217 -2.2360 10 6 1.9021 -4.6965 -3.9331 11 7 2.9289 -4.2286 -4.6108 12 14 1.0332 -6.2475 -4.5066 13 1 -0.3910 -5.9397 -4.7934 14 1 1.6875 -6.7545 -5.7394 15 1 1.1118 -7.2809 -3.4430 16 6 2.2800 -2.8464 0.0672 17 6 1.7739 -2.1404 1.3239 18 7 2.0225 -0.6980 1.1955 19 6 2.6943 -0.0290 2.1533 20 8 2.8191 1.1776 2.0782 21 6 3.2799 -0.7635 3.2964 22 7 2.5037 -1.1993 4.2737 23 6 2.9730 -1.8590 5.3166 24 6 4.3033 -2.1393 5.4583 25 6 5.1966 -1.7103 4.4619 26 6 6.5756 -1.9589 4.5358 27 6 7.3904 -1.5166 3.5379 28 6 6.8756 -0.8165 2.4482 29 6 5.5411 -0.5629 2.3416 30 6 4.6721 -1.0021 3.3489 31 1 -0.3634 0.5094 0.8925 32 1 -0.3634 0.5182 -0.8875 33 1 -0.3634 -1.0277 -0.0051 34 1 1.6076 -0.2812 -2.1364 35 1 3.1297 -0.6515 -1.2907 36 1 2.8591 -2.5560 -2.8711 37 1 3.2340 -4.6889 -5.4082 38 1 2.0123 -3.9021 0.1087 39 1 3.3639 -2.7475 0.0089 40 1 2.3023 -2.5261 2.1958 41 1 0.7043 -2.3186 1.4339 42 1 2.2846 -2.1874 6.0812 43 1 4.6617 -2.6811 6.3211 44 1 6.9876 -2.4968 5.3769 45 1 8.4519 -1.7072 3.5943 46 1 7.5450 -0.4731 1.6732 47 1 5.1565 -0.0230 1.4890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044725390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:35 Heat of formation + Delta-G solvation = 35.145527 kcal Electronic energy + Delta-G solvation = -29716.760654 eV Core-core repulsion = 25864.516907 eV Total energy + Delta-G solvation = -3852.243747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.39267 -39.88478 -37.73711 -37.46322 -34.56458 -33.48452 -32.24188 -31.83976 -31.48041 -29.96189 -29.30035 -27.30431 -25.43031 -24.15800 -23.82871 -23.21566 -22.96513 -21.64560 -20.55925 -18.77730 -18.05556 -17.76586 -17.27490 -17.00392 -16.44983 -15.82947 -15.22372 -14.95361 -14.71559 -14.43688 -14.39525 -14.03867 -14.00497 -13.75678 -13.53597 -13.45957 -13.14252 -12.89424 -12.79851 -12.50965 -12.32532 -12.11170 -11.81486 -11.65257 -11.46571 -11.28235 -10.92863 -10.87867 -10.77110 -10.48539 -10.46998 -10.24388 -10.20666 -9.76073 -9.64042 -9.59636 -9.37579 -8.91893 -8.56142 -8.32166 -6.99615 -5.79261 -3.08403 -0.03276 0.63591 1.57461 2.41811 2.73581 2.90657 3.41738 3.46556 3.47303 3.75700 4.01682 4.25612 4.43352 4.51679 4.55954 4.62187 4.84302 4.88057 4.99640 5.06890 5.11515 5.19489 5.22885 5.34138 5.44441 5.45808 5.49088 5.58951 5.66037 5.69556 5.76299 5.78927 5.81761 5.89487 6.07262 6.10308 6.17227 6.19228 6.26386 6.28996 6.39047 6.44131 6.51617 6.54515 6.59803 6.87450 7.02626 7.39424 7.60016 7.66517 8.04648 8.39067 9.50337 10.07573 10.42355 11.43211 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.003285 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.474119 B = 8521.399946 C = 9322.967421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.097 0.903 4 C -0.133 4.133 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.112 3.888 18 N -0.583 5.583 19 C 0.579 3.421 20 O -0.532 6.532 21 C 0.149 3.851 22 N -0.460 5.460 23 C 0.079 3.921 24 C -0.144 4.144 25 C -0.024 4.024 26 C -0.115 4.115 27 C -0.093 4.093 28 C -0.113 4.113 29 C -0.080 4.080 30 C -0.082 4.082 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.160 0.840 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 6.197 19.959 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.115 0.885 4 C -0.172 4.172 5 C 0.069 3.931 6 H 0.071 0.929 7 N -0.363 5.363 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.012 4.012 18 N -0.315 5.315 19 C 0.364 3.636 20 O -0.409 6.409 21 C -0.004 4.004 22 N -0.170 5.170 23 C -0.067 4.067 24 C -0.164 4.164 25 C -0.029 4.029 26 C -0.133 4.133 27 C -0.112 4.112 28 C -0.131 4.131 29 C -0.100 4.100 30 C -0.084 4.084 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.177 0.823 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.242 6.782 19.902 21.450 hybrid contribution 0.781 -1.199 -0.326 1.468 sum 5.022 5.583 19.577 20.968 Atomic orbital electron populations 1.22139 0.94631 1.02968 1.02105 1.21294 0.94491 0.97017 0.83354 0.88462 1.22229 1.01356 0.97296 0.96360 1.20195 0.96890 0.89051 0.86970 0.92948 1.42415 1.37963 1.29246 1.26707 1.19185 1.10276 1.01099 1.06600 0.91238 1.24729 0.98453 0.99410 0.98171 1.69651 1.27552 1.41351 1.19502 0.86297 0.78871 0.83284 0.77907 1.21242 1.21713 1.21302 1.22626 1.01210 1.00608 0.94828 1.21750 1.01310 0.78725 0.99372 1.48171 1.53340 1.09966 1.19976 1.17770 0.77906 0.86507 0.81461 1.90802 1.59888 1.13014 1.77163 1.21329 0.89733 0.95043 0.94339 1.67405 1.39548 1.08818 1.01210 1.22221 0.94044 0.95265 0.95134 1.22075 0.94339 1.00770 0.99221 1.18126 0.94536 0.96593 0.93626 1.20964 0.91626 1.00877 0.99784 1.21050 1.00357 0.96268 0.93499 1.21009 0.95372 0.98364 0.98369 1.21048 0.93527 0.97779 0.97616 1.18644 0.93355 1.00131 0.96293 0.92629 0.91153 0.91543 0.90237 0.91812 0.78285 0.93458 0.90564 0.92296 0.91093 0.90953 0.82280 0.84017 0.84827 0.85240 0.85082 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.03 37.16 0.34 -1.76 16 2 C 0.14 2.06 3.19 -67.60 -0.22 1.85 16 3 H 0.10 1.45 7.03 -51.93 -0.37 1.09 16 4 C -0.13 -2.17 5.02 -26.61 -0.13 -2.30 16 5 C 0.18 3.37 2.53 -67.89 -0.17 3.20 16 6 H 0.05 1.00 6.43 -51.93 -0.33 0.67 16 7 N -0.72 -17.45 5.12 -53.39 -0.27 -17.72 16 8 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 12 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C -0.15 -2.60 5.64 -26.83 -0.15 -2.75 16 17 C 0.11 1.63 5.91 -3.93 -0.02 1.61 16 18 N -0.58 -8.76 2.68 -166.54 -0.45 -9.21 16 19 C 0.58 9.31 6.07 -12.28 -0.07 9.24 16 20 O -0.53 -9.79 16.53 5.33 0.09 -9.70 16 21 C 0.15 2.19 4.73 -82.55 -0.39 1.80 16 22 N -0.46 -6.31 9.81 -9.81 -0.10 -6.40 16 23 C 0.08 0.82 11.06 -18.03 -0.20 0.62 16 24 C -0.14 -1.33 9.88 -39.28 -0.39 -1.72 16 25 C -0.02 -0.26 5.75 -106.82 -0.61 -0.88 16 26 C -0.11 -1.01 9.82 -39.53 -0.39 -1.40 16 27 C -0.09 -0.80 9.95 -39.89 -0.40 -1.20 16 28 C -0.11 -1.15 9.95 -39.87 -0.40 -1.55 16 29 C -0.08 -1.01 9.42 -39.60 -0.37 -1.39 16 30 C -0.08 -1.09 5.76 -106.59 -0.61 -1.71 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.89 5.74 -51.93 -0.30 0.60 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.02 6.01 -51.93 -0.31 0.70 16 41 H 0.07 1.00 7.52 -51.93 -0.39 0.61 16 42 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 47 H 0.13 1.76 7.23 -52.49 -0.38 1.38 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -32.55 380.26 -10.33 -42.88 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.59 Total: 9.77 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -4.44 Total: -5.38 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.09 Total: -60.25 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.55 -10.33 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.031 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds