Wall clock time and date at job start Tue Mar 31 2020 22:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.58526 * 2 1 4 4 C 1.53187 * 109.58824 * 239.56769 * 2 1 3 5 5 C 1.53042 * 109.31743 * 294.85016 * 4 2 1 6 6 H 1.09001 * 109.45450 * 58.65454 * 5 4 2 7 7 N 1.46499 * 109.45983 * 178.61323 * 5 4 2 8 8 C 1.36939 * 119.99935 * 205.00183 * 7 5 4 9 9 H 1.08001 * 119.99911 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00033 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99979 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47001 * 59.99533 * 12 10 8 14 14 H 1.48497 * 109.47203 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46821 * 299.99697 * 12 10 8 16 16 C 1.53038 * 109.53736 * 298.63438 * 5 4 2 17 17 C 1.52768 * 109.38014 * 61.23907 * 16 5 4 18 18 N 1.46929 * 109.00963 * 305.58452 * 17 16 5 19 19 C 1.34769 * 120.63154 * 233.58641 * 18 17 16 20 20 O 1.21538 * 120.00465 * 184.72980 * 19 18 17 21 21 C 1.47956 * 120.00005 * 4.73147 * 19 18 17 22 22 N 1.32198 * 120.15765 * 284.07543 * 21 19 18 23 23 C 1.32027 * 122.68027 * 180.02562 * 22 21 19 24 24 C 1.36684 * 122.03046 * 359.97438 * 23 22 21 25 25 C 1.40535 * 118.84984 * 0.02562 * 24 23 22 26 26 C 1.40318 * 122.22909 * 179.97438 * 25 24 23 27 27 C 1.36207 * 119.45612 * 180.02562 * 26 25 24 28 28 C 1.39376 * 120.99812 * 0.26737 * 27 26 25 29 29 C 1.36257 * 121.08645 * 359.43735 * 28 27 26 30 30 C 1.40093 * 119.53445 * 0.56280 * 29 28 27 31 31 H 1.08998 * 109.47422 * 299.71726 * 1 2 3 32 32 H 1.09007 * 109.47174 * 59.71980 * 1 2 3 33 33 H 1.09005 * 109.47261 * 179.71338 * 1 2 3 34 34 H 1.09001 * 109.49827 * 54.80321 * 4 2 1 35 35 H 1.09001 * 109.49942 * 174.86371 * 4 2 1 36 36 H 0.96997 * 120.00179 * 25.00131 * 7 5 4 37 37 H 0.96998 * 119.99530 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.49878 * 181.31558 * 16 5 4 39 39 H 1.08995 * 109.49898 * 301.41301 * 16 5 4 40 40 H 1.09004 * 109.50486 * 185.70379 * 17 16 5 41 41 H 1.08995 * 109.42977 * 65.42640 * 17 16 5 42 42 H 1.07994 * 118.98430 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.57824 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.27120 * 0.04463 * 26 25 24 45 45 H 1.07996 * 119.49418 * 179.97438 * 27 26 25 46 46 H 1.08004 * 119.46034 * 179.70539 * 28 27 26 47 47 H 1.08002 * 120.23588 * 180.28170 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 1.6415 -2.2057 -1.1673 6 1 0.5565 -2.2829 -1.0964 7 7 2.1024 -2.9008 -2.3716 8 6 1.4651 -4.0375 -2.7923 9 1 0.6229 -4.4217 -2.2360 10 6 1.9021 -4.6965 -3.9331 11 7 2.9289 -4.2286 -4.6108 12 14 1.0332 -6.2475 -4.5066 13 1 -0.3910 -5.9397 -4.7934 14 1 1.6875 -6.7545 -5.7394 15 1 1.1118 -7.2809 -3.4430 16 6 2.2800 -2.8464 0.0672 17 6 1.7739 -2.1404 1.3239 18 7 2.0225 -0.6980 1.1955 19 6 2.6943 -0.0290 2.1533 20 8 2.8191 1.1776 2.0782 21 6 3.2799 -0.7635 3.2964 22 7 2.5037 -1.1993 4.2737 23 6 2.9730 -1.8590 5.3166 24 6 4.3033 -2.1393 5.4583 25 6 5.1966 -1.7103 4.4619 26 6 6.5756 -1.9589 4.5358 27 6 7.3904 -1.5166 3.5379 28 6 6.8756 -0.8165 2.4482 29 6 5.5411 -0.5629 2.3416 30 6 4.6721 -1.0021 3.3489 31 1 -0.3634 0.5094 0.8925 32 1 -0.3634 0.5182 -0.8875 33 1 -0.3634 -1.0277 -0.0051 34 1 1.6076 -0.2812 -2.1364 35 1 3.1297 -0.6515 -1.2907 36 1 2.8591 -2.5560 -2.8711 37 1 3.2340 -4.6889 -5.4082 38 1 2.0123 -3.9021 0.1087 39 1 3.3639 -2.7475 0.0089 40 1 2.3023 -2.5261 2.1958 41 1 0.7043 -2.3186 1.4339 42 1 2.2846 -2.1874 6.0812 43 1 4.6617 -2.6811 6.3211 44 1 6.9876 -2.4968 5.3769 45 1 8.4519 -1.7072 3.5943 46 1 7.5450 -0.4731 1.6732 47 1 5.1565 -0.0230 1.4890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044725390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:34 Heat of formation + Delta-G solvation = 15.763237 kcal Electronic energy + Delta-G solvation = -29717.601133 eV Core-core repulsion = 25864.516907 eV Total energy + Delta-G solvation = -3853.084226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.33964 -41.02670 -39.01990 -38.35955 -36.28261 -34.47724 -33.72746 -33.27285 -32.28356 -31.17688 -30.61863 -28.67348 -26.46891 -25.81106 -24.65498 -24.45881 -24.13553 -22.96229 -21.78046 -20.00816 -19.26724 -18.87026 -18.61992 -18.22921 -17.55071 -16.77067 -16.73691 -16.17083 -15.72030 -15.70817 -15.46176 -15.42575 -15.19097 -14.97902 -14.81486 -14.63508 -14.50270 -14.09688 -13.93477 -13.75978 -13.27115 -13.17669 -12.99989 -12.84940 -12.81205 -12.75480 -12.51008 -12.27442 -12.21570 -12.12945 -11.98780 -11.71648 -11.42655 -11.23211 -11.13052 -10.87867 -10.57343 -10.18193 -9.84548 -9.11268 -9.00281 -7.92058 -5.20897 -0.86390 -0.16279 0.74597 1.24400 1.49008 1.51237 1.57169 1.69112 2.01290 2.57513 2.89836 3.01287 3.40726 3.48791 3.63565 3.67834 3.74866 3.79242 3.86299 3.91446 4.02220 4.08025 4.18890 4.23520 4.28308 4.35861 4.41730 4.49309 4.50931 4.58417 4.69620 4.71329 4.74694 4.79294 4.92427 4.97572 4.99876 5.01723 5.05949 5.21176 5.26691 5.36179 5.40504 5.45973 5.53078 5.53470 5.55600 5.82189 6.15869 6.29289 6.71929 6.84657 7.35741 8.10363 8.34230 9.31288 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.003285 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.474119 B = 8521.399946 C = 9322.967421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.093 0.907 4 C -0.122 4.122 5 C 0.177 3.823 6 H 0.057 0.943 7 N -0.735 5.735 8 C -0.237 4.237 9 H 0.078 0.922 10 C -0.074 4.074 11 N -0.971 5.971 12 Si 0.969 3.031 13 H -0.278 1.278 14 H -0.299 1.299 15 H -0.278 1.278 16 C -0.138 4.138 17 C 0.125 3.875 18 N -0.582 5.582 19 C 0.579 3.421 20 O -0.566 6.566 21 C 0.112 3.888 22 N -0.475 5.475 23 C 0.059 3.941 24 C -0.118 4.118 25 C -0.046 4.046 26 C -0.102 4.102 27 C -0.099 4.099 28 C -0.105 4.105 29 C -0.120 4.120 30 C -0.096 4.096 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.192 0.808 43 H 0.187 0.813 44 H 0.174 0.826 45 H 0.164 0.836 46 H 0.146 0.854 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 4.740 22.898 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.161 4.161 5 C 0.069 3.931 6 H 0.075 0.925 7 N -0.374 5.374 8 C -0.369 4.369 9 H 0.096 0.904 10 C -0.266 4.266 11 N -0.621 5.621 12 Si 0.798 3.202 13 H -0.204 1.204 14 H -0.225 1.225 15 H -0.204 1.204 16 C -0.179 4.179 17 C 0.002 3.998 18 N -0.313 5.313 19 C 0.366 3.634 20 O -0.445 6.445 21 C -0.040 4.040 22 N -0.186 5.186 23 C -0.087 4.087 24 C -0.137 4.137 25 C -0.051 4.051 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.123 4.123 29 C -0.140 4.140 30 C -0.099 4.099 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.202 0.798 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.209 0.791 43 H 0.204 0.796 44 H 0.191 0.809 45 H 0.182 0.818 46 H 0.164 0.836 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.515 5.332 22.878 23.922 hybrid contribution 0.779 -0.728 -1.102 1.533 sum 5.294 4.605 21.776 22.879 Atomic orbital electron populations 1.22091 0.92940 1.03099 1.03030 1.21256 0.95705 0.96431 0.82470 0.88866 1.22082 1.00686 0.95872 0.97449 1.20381 0.97009 0.90041 0.85664 0.92536 1.42614 1.37524 1.29107 1.28190 1.19584 1.09869 1.01340 1.06111 0.90407 1.25505 0.99581 1.02655 0.98848 1.69815 1.29455 1.42856 1.20001 0.85277 0.77918 0.79901 0.77072 1.20375 1.22505 1.20432 1.22392 1.00086 1.00117 0.95332 1.21622 1.01985 0.78196 0.98019 1.48204 1.53182 1.10027 1.19912 1.18113 0.77099 0.86237 0.81964 1.90754 1.61042 1.14547 1.78172 1.21032 0.90529 0.97708 0.94745 1.67327 1.40298 1.09160 1.01814 1.22812 0.95593 0.95289 0.95000 1.22573 0.93430 0.98455 0.99265 1.18538 0.96197 0.96899 0.93472 1.21452 0.90408 0.99512 1.00562 1.21451 1.02196 0.95539 0.92636 1.21337 0.94500 0.97237 0.99264 1.20990 0.94944 1.00188 0.97852 1.18815 0.92895 1.00780 0.97432 0.92139 0.89831 0.91691 0.90121 0.92938 0.79767 0.94164 0.91522 0.93831 0.90425 0.89527 0.79136 0.79601 0.80902 0.81806 0.83614 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.03 71.98 0.65 -3.28 16 2 C 0.14 4.31 3.19 44.97 0.14 4.45 16 3 H 0.09 2.91 7.03 -2.39 -0.02 2.89 16 4 C -0.12 -4.09 5.02 30.67 0.15 -3.93 16 5 C 0.18 6.77 2.53 45.02 0.11 6.88 16 6 H 0.06 2.14 6.43 -2.39 -0.02 2.12 16 7 N -0.74 -36.24 5.12 -322.81 -1.65 -37.89 16 8 C -0.24 -12.81 9.93 84.03 0.83 -11.97 16 9 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 10 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 11 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 12 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 C -0.14 -4.83 5.64 30.53 0.17 -4.66 16 17 C 0.12 3.65 5.91 86.22 0.51 4.16 16 18 N -0.58 -17.99 2.68 -799.11 -2.14 -20.14 16 19 C 0.58 19.52 6.07 86.82 0.53 20.05 16 20 O -0.57 -22.09 16.53 -3.83 -0.06 -22.15 16 21 C 0.11 3.35 4.73 42.43 0.20 3.55 16 22 N -0.48 -12.77 9.81 -184.95 -1.81 -14.58 16 23 C 0.06 1.08 11.06 84.30 0.93 2.01 16 24 C -0.12 -1.76 9.88 22.47 0.22 -1.54 16 25 C -0.05 -0.91 5.75 -21.29 -0.12 -1.04 16 26 C -0.10 -1.42 9.82 22.30 0.22 -1.20 16 27 C -0.10 -1.43 9.95 22.07 0.22 -1.21 16 28 C -0.11 -2.09 9.95 22.08 0.22 -1.87 16 29 C -0.12 -3.20 9.42 22.26 0.21 -2.99 16 30 C -0.10 -2.61 5.76 -21.14 -0.12 -2.74 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.06 1.68 5.74 -2.38 -0.01 1.66 16 34 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 37 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 2.23 6.01 -2.38 -0.01 2.21 16 41 H 0.09 2.31 7.52 -2.39 -0.02 2.29 16 42 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 43 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 44 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 45 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 46 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 47 H 0.11 3.27 7.23 -2.91 -0.02 3.25 16 Total: -1.00 -73.47 380.26 2.46 -71.02 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.27 Total: 33.93 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.55 Total: 0.99 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -5.33 Total: -131.21 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.47 2.46 -71.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.778 kcal (2) G-P(sol) polarization free energy of solvation -73.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds