Wall clock time and date at job start Tue Mar 31 2020 22:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.58654 * 2 1 4 4 C 1.53198 * 109.58631 * 239.55788 * 2 1 3 5 5 C 1.53039 * 109.31163 * 185.56327 * 4 2 1 6 6 H 1.09001 * 109.46139 * 301.37455 * 5 4 2 7 7 N 1.46499 * 109.46182 * 181.40103 * 5 4 2 8 8 C 1.36931 * 120.00304 * 154.97460 * 7 5 4 9 9 H 1.08001 * 119.99798 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00072 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00026 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00139 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47086 * 89.99398 * 12 10 8 14 14 H 1.48506 * 109.46674 * 329.99664 * 12 10 8 15 15 H 1.48492 * 109.47010 * 210.00093 * 12 10 8 16 16 C 1.53043 * 109.52606 * 61.39069 * 5 4 2 17 17 C 1.53196 * 109.31131 * 298.62546 * 16 5 4 18 18 N 1.46924 * 108.77686 * 54.63375 * 17 16 5 19 19 C 1.34771 * 120.63276 * 126.41032 * 18 17 16 20 20 O 1.21538 * 120.00253 * 174.36980 * 19 18 17 21 21 C 1.47957 * 119.99730 * 354.37796 * 19 18 17 22 22 N 1.32199 * 120.15986 * 76.11793 * 21 19 18 23 23 C 1.32027 * 122.67685 * 180.02562 * 22 21 19 24 24 C 1.36683 * 122.03055 * 359.97438 * 23 22 21 25 25 C 1.40531 * 118.85191 * 0.02562 * 24 23 22 26 26 C 1.40316 * 122.22499 * 179.97438 * 25 24 23 27 27 C 1.36216 * 119.45002 * 179.10254 * 26 25 24 28 28 C 1.39384 * 120.99679 * 0.87730 * 27 26 25 29 29 C 1.36256 * 121.08495 * 359.44168 * 28 27 26 30 30 C 1.40095 * 119.53477 * 359.97246 * 29 28 27 31 31 H 1.08996 * 109.47386 * 307.14580 * 1 2 3 32 32 H 1.09001 * 109.47320 * 67.14210 * 1 2 3 33 33 H 1.09004 * 109.47430 * 187.13715 * 1 2 3 34 34 H 1.08997 * 109.48039 * 65.62342 * 4 2 1 35 35 H 1.08997 * 109.51078 * 305.52132 * 4 2 1 36 36 H 0.97004 * 119.99524 * 334.97548 * 7 5 4 37 37 H 0.97003 * 119.99744 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.49839 * 58.57560 * 16 5 4 39 39 H 1.09004 * 109.49595 * 178.67746 * 16 5 4 40 40 H 1.08996 * 109.58543 * 174.42176 * 17 16 5 41 41 H 1.09005 * 109.58694 * 294.85015 * 17 16 5 42 42 H 1.08005 * 118.98258 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.57524 * 180.02562 * 24 23 22 44 44 H 1.07995 * 120.27672 * 359.97438 * 26 25 24 45 45 H 1.07997 * 119.49952 * 180.27709 * 27 26 25 46 46 H 1.07999 * 119.45748 * 179.41772 * 28 27 26 47 47 H 1.08000 * 120.23395 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7313 -1.2444 5 6 3.5674 -0.8494 -1.1691 6 1 4.0059 0.1461 -1.0993 7 7 4.0652 -1.5187 -2.3734 8 6 5.3494 -1.3016 -2.7962 9 1 5.9952 -0.6366 -2.2419 10 6 5.8209 -1.9353 -3.9377 11 7 7.0554 -1.7270 -4.3438 12 14 4.7032 -3.0838 -4.8975 13 1 3.9688 -2.3106 -5.9310 14 1 3.7318 -3.7182 -3.9705 15 1 5.5205 -4.1357 -5.5538 16 6 3.9568 -1.6657 0.0656 17 6 3.4649 -0.9454 1.3250 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1035 2.1549 20 8 -0.0087 -0.8042 2.0869 21 6 1.6602 -1.9128 3.2912 22 7 2.3381 -1.3392 4.2705 23 6 2.8011 -2.0132 5.3071 24 6 2.6096 -3.3600 5.4402 25 6 1.8980 -4.0458 4.4411 26 6 1.6609 -5.4273 4.5057 27 6 0.9484 -6.0317 3.5145 28 6 0.4673 -5.3018 2.4289 29 6 0.6851 -3.9603 2.3311 30 6 1.4035 -3.3021 3.3377 31 1 -0.3634 0.6205 0.8191 32 1 -0.3634 0.3992 -0.9470 33 1 -0.3634 -1.0197 0.1277 34 1 1.7657 -0.1699 -2.1364 35 1 1.6031 -1.7274 -1.2889 36 1 3.4850 -2.1156 -2.8714 37 1 7.3847 -2.1696 -5.1417 38 1 3.4982 -2.6529 0.0085 39 1 5.0412 -1.7695 0.1059 40 1 3.6517 -1.5691 2.1991 41 1 3.9902 0.0038 1.4317 42 1 3.3472 -1.4839 6.0739 43 1 2.9984 -3.8881 6.2984 44 1 2.0281 -6.0042 5.3416 45 1 0.7615 -7.0941 3.5658 46 1 -0.0867 -5.8079 1.6522 47 1 0.3064 -3.4082 1.4835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044725392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:39 Heat of formation + Delta-G solvation = 52.546625 kcal Electronic energy + Delta-G solvation = -29858.743507 eV Core-core repulsion = 26007.254328 eV Total energy + Delta-G solvation = -3851.489179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.47439 -40.06129 -37.69808 -37.46278 -34.69415 -33.68052 -32.38774 -31.99210 -31.52052 -30.09754 -29.66767 -27.24557 -25.36711 -24.31063 -23.86449 -23.23655 -22.73022 -21.61604 -20.28833 -19.54506 -18.13174 -17.83368 -17.54592 -17.04303 -16.25794 -16.07414 -15.34863 -15.08490 -14.86348 -14.48481 -14.36015 -14.18159 -14.05535 -13.95168 -13.66232 -13.43398 -13.11419 -12.88877 -12.60684 -12.48663 -12.27751 -12.22603 -12.12482 -11.90931 -11.50339 -11.48502 -11.03520 -10.98098 -10.87221 -10.58037 -10.48511 -10.32413 -10.03523 -9.90176 -9.62543 -9.42256 -9.18231 -8.96408 -8.55741 -8.35698 -7.31950 -5.80662 -3.16608 -0.07040 0.59505 1.53196 2.37183 2.69019 2.85740 3.34597 3.37618 3.42770 3.71865 3.97089 4.21741 4.39203 4.47714 4.55742 4.57985 4.79770 4.83947 4.93782 4.94141 5.02911 5.07115 5.16831 5.25204 5.39602 5.40578 5.44625 5.51467 5.55235 5.64566 5.73278 5.74687 5.79384 5.87091 5.99043 6.04652 6.06032 6.11389 6.21844 6.25890 6.27665 6.34438 6.39602 6.49743 6.61664 6.77060 6.90807 7.34357 7.57232 7.94986 8.02917 8.38356 9.16483 9.89187 10.08886 11.37569 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.003476 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.703619 B = 8052.931081 C = 8690.631694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.059 0.941 7 N -0.747 5.747 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.291 1.291 16 C -0.151 4.151 17 C 0.112 3.888 18 N -0.586 5.586 19 C 0.578 3.422 20 O -0.523 6.523 21 C 0.146 3.854 22 N -0.459 5.459 23 C 0.079 3.921 24 C -0.144 4.144 25 C -0.024 4.024 26 C -0.113 4.113 27 C -0.094 4.094 28 C -0.114 4.114 29 C -0.081 4.081 30 C -0.082 4.082 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.160 0.840 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.888 -5.374 19.784 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 H 0.097 0.903 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.077 0.923 7 N -0.389 5.389 8 C -0.374 4.374 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.218 1.218 16 C -0.192 4.192 17 C -0.012 4.012 18 N -0.318 5.318 19 C 0.363 3.637 20 O -0.399 6.399 21 C -0.008 4.008 22 N -0.170 5.170 23 C -0.066 4.066 24 C -0.164 4.164 25 C -0.029 4.029 26 C -0.131 4.131 27 C -0.113 4.113 28 C -0.132 4.132 29 C -0.100 4.100 30 C -0.084 4.084 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.178 0.822 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.029 -4.212 19.747 24.030 hybrid contribution -0.553 -1.943 -0.607 2.109 sum -13.581 -6.155 19.140 24.262 Atomic orbital electron populations 1.22206 0.92727 1.03564 1.01052 1.21379 0.95519 0.95516 0.83146 0.90337 1.22354 0.97586 1.00948 0.96885 1.20144 0.90744 0.95455 0.86284 0.92344 1.42782 1.13209 1.54729 1.28180 1.19070 0.87705 1.23285 1.07376 0.89146 1.24664 0.96075 1.00047 0.98198 1.69701 1.15092 1.47153 1.26131 0.86570 0.80359 0.81304 0.80399 1.21033 1.20398 1.21774 1.22664 1.02262 0.99692 0.94599 1.21860 0.78917 1.01058 0.99318 1.48160 1.07819 1.56112 1.19746 1.17793 0.85673 0.78877 0.81318 1.90868 1.16563 1.56081 1.76413 1.21466 0.94285 0.90516 0.94503 1.67419 1.08070 1.40255 1.01210 1.22237 0.97418 0.91715 0.95228 1.22083 0.99207 0.95952 0.99176 1.18129 0.96800 0.94256 0.93707 1.20974 0.99586 0.92746 0.99830 1.21048 0.96203 1.00414 0.93610 1.20998 0.99798 0.94035 0.98369 1.21023 0.96354 0.95066 0.97595 1.18641 1.00314 0.93102 0.96357 0.90635 0.93312 0.91805 0.90199 0.91849 0.80654 0.93040 0.92370 0.90056 0.90833 0.90670 0.82245 0.83997 0.84805 0.85259 0.85190 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.61 37.15 0.28 -1.56 16 2 C 0.15 2.03 3.49 -67.60 -0.24 1.79 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.10 4.84 -26.61 -0.13 -2.23 16 5 C 0.18 3.33 2.73 -67.89 -0.19 3.14 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 N -0.75 -16.98 4.92 -53.38 -0.26 -17.24 16 8 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 9 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 10 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 12 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 17 C 0.11 1.57 6.35 -3.71 -0.02 1.55 16 18 N -0.59 -8.38 2.97 -166.28 -0.49 -8.87 16 19 C 0.58 8.71 5.88 -12.28 -0.07 8.64 16 20 O -0.52 -8.70 12.66 5.33 0.07 -8.63 16 21 C 0.15 2.04 4.76 -82.54 -0.39 1.65 16 22 N -0.46 -6.10 9.78 -9.81 -0.10 -6.20 16 23 C 0.08 0.80 11.06 -18.03 -0.20 0.60 16 24 C -0.14 -1.29 9.88 -39.28 -0.39 -1.68 16 25 C -0.02 -0.25 5.75 -106.83 -0.61 -0.87 16 26 C -0.11 -0.96 9.82 -39.53 -0.39 -1.35 16 27 C -0.09 -0.77 9.95 -39.88 -0.40 -1.17 16 28 C -0.11 -1.09 9.95 -39.87 -0.40 -1.49 16 29 C -0.08 -0.97 9.42 -39.60 -0.37 -1.34 16 30 C -0.08 -1.05 5.76 -106.59 -0.61 -1.66 16 31 H 0.07 1.08 6.66 -51.93 -0.35 0.74 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.91 6.83 -51.93 -0.35 0.55 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.07 1.02 5.99 -51.93 -0.31 0.71 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 43 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.13 1.63 7.23 -52.49 -0.38 1.25 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -33.05 375.69 -10.30 -43.35 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.71 Total: 8.33 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.53 Total: -5.37 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.08 Total: -60.38 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.07 Total: -8.63 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.05 -10.30 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.898 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds