Wall clock time and date at job start Tue Mar 31 2020 22:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.58654 * 2 1 4 4 C 1.53198 * 109.58631 * 239.55788 * 2 1 3 5 5 C 1.53039 * 109.31163 * 185.56327 * 4 2 1 6 6 H 1.09001 * 109.46139 * 301.37455 * 5 4 2 7 7 N 1.46499 * 109.46182 * 181.40103 * 5 4 2 8 8 C 1.36931 * 120.00304 * 154.97460 * 7 5 4 9 9 H 1.08001 * 119.99798 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00072 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00026 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00139 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47086 * 89.99398 * 12 10 8 14 14 H 1.48506 * 109.46674 * 329.99664 * 12 10 8 15 15 H 1.48492 * 109.47010 * 210.00093 * 12 10 8 16 16 C 1.53043 * 109.52606 * 61.39069 * 5 4 2 17 17 C 1.53196 * 109.31131 * 298.62546 * 16 5 4 18 18 N 1.46924 * 108.77686 * 54.63375 * 17 16 5 19 19 C 1.34771 * 120.63276 * 126.41032 * 18 17 16 20 20 O 1.21538 * 120.00253 * 174.36980 * 19 18 17 21 21 C 1.47957 * 119.99730 * 354.37796 * 19 18 17 22 22 N 1.32199 * 120.15986 * 76.11793 * 21 19 18 23 23 C 1.32027 * 122.67685 * 180.02562 * 22 21 19 24 24 C 1.36683 * 122.03055 * 359.97438 * 23 22 21 25 25 C 1.40531 * 118.85191 * 0.02562 * 24 23 22 26 26 C 1.40316 * 122.22499 * 179.97438 * 25 24 23 27 27 C 1.36216 * 119.45002 * 179.10254 * 26 25 24 28 28 C 1.39384 * 120.99679 * 0.87730 * 27 26 25 29 29 C 1.36256 * 121.08495 * 359.44168 * 28 27 26 30 30 C 1.40095 * 119.53477 * 359.97246 * 29 28 27 31 31 H 1.08996 * 109.47386 * 307.14580 * 1 2 3 32 32 H 1.09001 * 109.47320 * 67.14210 * 1 2 3 33 33 H 1.09004 * 109.47430 * 187.13715 * 1 2 3 34 34 H 1.08997 * 109.48039 * 65.62342 * 4 2 1 35 35 H 1.08997 * 109.51078 * 305.52132 * 4 2 1 36 36 H 0.97004 * 119.99524 * 334.97548 * 7 5 4 37 37 H 0.97003 * 119.99744 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.49839 * 58.57560 * 16 5 4 39 39 H 1.09004 * 109.49595 * 178.67746 * 16 5 4 40 40 H 1.08996 * 109.58543 * 174.42176 * 17 16 5 41 41 H 1.09005 * 109.58694 * 294.85015 * 17 16 5 42 42 H 1.08005 * 118.98258 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.57524 * 180.02562 * 24 23 22 44 44 H 1.07995 * 120.27672 * 359.97438 * 26 25 24 45 45 H 1.07997 * 119.49952 * 180.27709 * 27 26 25 46 46 H 1.07999 * 119.45748 * 179.41772 * 28 27 26 47 47 H 1.08000 * 120.23395 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7313 -1.2444 5 6 3.5674 -0.8494 -1.1691 6 1 4.0059 0.1461 -1.0993 7 7 4.0652 -1.5187 -2.3734 8 6 5.3494 -1.3016 -2.7962 9 1 5.9952 -0.6366 -2.2419 10 6 5.8209 -1.9353 -3.9377 11 7 7.0554 -1.7270 -4.3438 12 14 4.7032 -3.0838 -4.8975 13 1 3.9688 -2.3106 -5.9310 14 1 3.7318 -3.7182 -3.9705 15 1 5.5205 -4.1357 -5.5538 16 6 3.9568 -1.6657 0.0656 17 6 3.4649 -0.9454 1.3250 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1035 2.1549 20 8 -0.0087 -0.8042 2.0869 21 6 1.6602 -1.9128 3.2912 22 7 2.3381 -1.3392 4.2705 23 6 2.8011 -2.0132 5.3071 24 6 2.6096 -3.3600 5.4402 25 6 1.8980 -4.0458 4.4411 26 6 1.6609 -5.4273 4.5057 27 6 0.9484 -6.0317 3.5145 28 6 0.4673 -5.3018 2.4289 29 6 0.6851 -3.9603 2.3311 30 6 1.4035 -3.3021 3.3377 31 1 -0.3634 0.6205 0.8191 32 1 -0.3634 0.3992 -0.9470 33 1 -0.3634 -1.0197 0.1277 34 1 1.7657 -0.1699 -2.1364 35 1 1.6031 -1.7274 -1.2889 36 1 3.4850 -2.1156 -2.8714 37 1 7.3847 -2.1696 -5.1417 38 1 3.4982 -2.6529 0.0085 39 1 5.0412 -1.7695 0.1059 40 1 3.6517 -1.5691 2.1991 41 1 3.9902 0.0038 1.4317 42 1 3.3472 -1.4839 6.0739 43 1 2.9984 -3.8881 6.2984 44 1 2.0281 -6.0042 5.3416 45 1 0.7615 -7.0941 3.5658 46 1 -0.0867 -5.8079 1.6522 47 1 0.3064 -3.4082 1.4835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044725392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:38 Heat of formation + Delta-G solvation = 32.448025 kcal Electronic energy + Delta-G solvation = -29859.615048 eV Core-core repulsion = 26007.254328 eV Total energy + Delta-G solvation = -3852.360719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.38233 -41.09799 -38.88853 -38.36704 -36.34448 -34.62267 -33.88022 -33.41160 -32.27514 -31.60945 -30.65382 -28.53453 -26.36359 -25.77599 -24.63457 -24.35196 -24.09072 -22.73104 -21.72647 -20.69806 -19.61421 -18.95275 -18.59353 -17.98203 -17.34616 -16.96355 -16.74100 -16.37527 -15.95633 -15.84519 -15.43487 -15.33613 -15.13157 -14.90012 -14.76428 -14.62810 -14.61483 -14.11061 -13.91553 -13.77261 -13.44413 -13.24208 -13.12530 -12.99181 -12.79871 -12.78107 -12.64696 -12.23223 -12.12954 -12.08190 -11.99656 -11.79558 -11.47248 -11.25285 -10.95681 -10.87129 -10.26840 -10.16723 -9.75858 -9.33006 -9.09573 -8.01384 -5.34908 -0.85104 -0.15781 0.75675 1.28385 1.38133 1.40823 1.47841 1.70958 2.01963 2.48857 2.91472 3.01890 3.29623 3.43848 3.50193 3.64266 3.74068 3.75368 3.86695 3.91153 3.97406 4.09440 4.16409 4.23934 4.25234 4.34926 4.41698 4.46673 4.52387 4.55633 4.68557 4.70048 4.75425 4.80106 4.91785 4.93500 4.98244 5.06167 5.08882 5.18987 5.33219 5.36945 5.39710 5.41221 5.52659 5.60538 5.78148 5.82526 6.18964 6.22473 6.74241 6.91023 7.08215 7.83871 8.03179 9.20065 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.003476 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.703619 B = 8052.931081 C = 8690.631694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.148 3.852 3 H 0.089 0.911 4 C -0.126 4.126 5 C 0.178 3.822 6 H 0.051 0.949 7 N -0.750 5.750 8 C -0.227 4.227 9 H 0.060 0.940 10 C -0.062 4.062 11 N -0.984 5.984 12 Si 0.951 3.049 13 H -0.278 1.278 14 H -0.255 1.255 15 H -0.298 1.298 16 C -0.138 4.138 17 C 0.124 3.876 18 N -0.587 5.587 19 C 0.579 3.421 20 O -0.547 6.547 21 C 0.110 3.890 22 N -0.478 5.478 23 C 0.058 3.942 24 C -0.122 4.122 25 C -0.046 4.046 26 C -0.104 4.104 27 C -0.099 4.099 28 C -0.106 4.106 29 C -0.116 4.116 30 C -0.096 4.096 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.364 0.636 37 H 0.257 0.743 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.189 0.811 43 H 0.184 0.816 44 H 0.171 0.829 45 H 0.163 0.837 46 H 0.148 0.852 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 -7.505 21.772 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.045 3.955 3 H 0.107 0.893 4 C -0.165 4.165 5 C 0.070 3.930 6 H 0.069 0.931 7 N -0.392 5.392 8 C -0.358 4.358 9 H 0.078 0.922 10 C -0.253 4.253 11 N -0.634 5.634 12 Si 0.779 3.221 13 H -0.204 1.204 14 H -0.179 1.179 15 H -0.225 1.225 16 C -0.179 4.179 17 C 0.001 3.999 18 N -0.319 5.319 19 C 0.366 3.634 20 O -0.425 6.425 21 C -0.042 4.042 22 N -0.189 5.189 23 C -0.087 4.087 24 C -0.141 4.141 25 C -0.051 4.051 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.124 4.124 29 C -0.136 4.136 30 C -0.099 4.099 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.197 0.803 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.206 0.794 43 H 0.201 0.799 44 H 0.188 0.812 45 H 0.181 0.819 46 H 0.165 0.835 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.437 -6.330 21.773 26.880 hybrid contribution -0.110 -1.300 -1.056 1.679 sum -14.547 -7.630 20.716 26.438 Atomic orbital electron populations 1.22057 0.92071 1.02699 1.01561 1.21412 0.95935 0.95735 0.82407 0.89346 1.22213 0.94934 1.01370 0.97978 1.20350 0.92746 0.94761 0.85140 0.93094 1.42785 1.11633 1.55164 1.29628 1.19025 0.88957 1.21382 1.06400 0.92234 1.25439 0.97592 1.02516 0.99750 1.69879 1.17412 1.49161 1.26988 0.85464 0.78609 0.78933 0.79078 1.20435 1.17941 1.22489 1.22434 1.00971 0.99438 0.95085 1.21697 0.78966 1.01168 0.98041 1.48177 1.07697 1.56131 1.19900 1.18047 0.85336 0.78397 0.81646 1.90837 1.17479 1.56956 1.77188 1.21248 0.96853 0.91156 0.94912 1.67343 1.08236 1.41427 1.01888 1.22777 0.97995 0.92780 0.95177 1.22550 0.96723 0.95509 0.99281 1.18531 0.97462 0.95515 0.93636 1.21433 0.98284 0.91820 1.00627 1.21452 0.95611 1.01981 0.92781 1.21337 0.98684 0.93206 0.99189 1.20999 0.98542 0.96252 0.97827 1.18817 1.00755 0.92856 0.97467 0.91716 0.91452 0.93001 0.89413 0.91823 0.80270 0.93421 0.92849 0.91932 0.90280 0.89877 0.79433 0.79877 0.81200 0.81930 0.83470 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 7.61 71.98 0.55 -2.78 16 2 C 0.15 4.01 3.49 44.97 0.16 4.17 16 3 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.13 -3.73 4.84 30.67 0.15 -3.58 16 5 C 0.18 6.45 2.73 45.02 0.12 6.57 16 6 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 7 N -0.75 -33.90 4.92 -322.81 -1.59 -35.49 16 8 C -0.23 -12.59 10.41 84.04 0.87 -11.72 16 9 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 10 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 11 N -0.98 -62.46 13.97 21.65 0.30 -62.16 16 12 Si 0.95 45.02 27.74 68.60 1.90 46.92 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 15 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 16 C -0.14 -4.63 5.66 30.67 0.17 -4.45 16 17 C 0.12 3.53 6.35 86.36 0.55 4.07 16 18 N -0.59 -16.91 2.97 -798.29 -2.37 -19.28 16 19 C 0.58 17.89 5.88 86.82 0.51 18.40 16 20 O -0.55 -18.82 12.66 -3.83 -0.05 -18.86 16 21 C 0.11 3.13 4.76 42.43 0.20 3.33 16 22 N -0.48 -12.54 9.78 -184.94 -1.81 -14.35 16 23 C 0.06 1.07 11.06 84.30 0.93 2.00 16 24 C -0.12 -1.79 9.88 22.47 0.22 -1.57 16 25 C -0.05 -0.88 5.75 -21.29 -0.12 -1.01 16 26 C -0.10 -1.38 9.82 22.30 0.22 -1.16 16 27 C -0.10 -1.30 9.95 22.07 0.22 -1.08 16 28 C -0.11 -1.88 9.95 22.08 0.22 -1.66 16 29 C -0.12 -2.81 9.42 22.26 0.21 -2.60 16 30 C -0.10 -2.44 5.76 -21.14 -0.12 -2.56 16 31 H 0.06 1.86 6.66 -2.39 -0.02 1.85 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.49 6.83 -2.38 -0.02 1.47 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.36 15.96 5.66 -92.71 -0.52 15.44 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.08 2.20 5.99 -2.39 -0.01 2.19 16 41 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 46 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 47 H 0.11 3.01 7.23 -2.91 -0.02 2.99 16 Total: -1.00 -74.70 375.69 2.32 -72.38 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.40 Total: 29.55 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.53 Total: 1.28 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.47 Total: -131.27 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Total: -74.70 2.32 -72.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.832 kcal (2) G-P(sol) polarization free energy of solvation -74.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds