Wall clock time and date at job start Tue Mar 31 2020 22:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70301 * 2 1 4 4 C 1.53189 * 109.58937 * 120.35247 * 2 1 3 5 5 C 1.53035 * 109.31369 * 174.42283 * 4 2 1 6 6 H 1.08994 * 109.46196 * 58.64452 * 5 4 2 7 7 N 1.46510 * 109.46229 * 178.62033 * 5 4 2 8 8 C 1.36931 * 120.00048 * 205.00441 * 7 5 4 9 9 H 1.08005 * 119.99844 * 359.71383 * 8 7 5 10 10 C 1.38807 * 120.00004 * 179.71910 * 8 7 5 11 11 N 1.31620 * 120.00123 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00217 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47274 * 89.99399 * 12 10 8 14 14 H 1.48503 * 109.47189 * 210.00026 * 12 10 8 15 15 H 1.48497 * 109.46743 * 329.99950 * 12 10 8 16 16 C 1.53047 * 109.53899 * 298.63447 * 5 4 2 17 17 C 1.53197 * 109.30765 * 61.36868 * 16 5 4 18 18 N 1.46923 * 108.77238 * 305.35928 * 17 16 5 19 19 C 1.34775 * 120.63009 * 233.58565 * 18 17 16 20 20 O 1.21542 * 119.99857 * 185.45023 * 19 18 17 21 21 C 1.47946 * 120.00343 * 5.45685 * 19 18 17 22 22 N 1.32204 * 120.15130 * 284.80262 * 21 19 18 23 23 C 1.32034 * 122.67139 * 179.74869 * 22 21 19 24 24 C 1.36680 * 122.03500 * 0.53479 * 23 22 21 25 25 C 1.40539 * 118.84475 * 359.74304 * 24 23 22 26 26 C 1.40323 * 122.22616 * 180.02562 * 25 24 23 27 27 C 1.36206 * 119.45561 * 179.97438 * 26 25 24 28 28 C 1.39380 * 121.00123 * 359.97369 * 27 26 25 29 29 C 1.36255 * 121.07938 * 0.04706 * 28 27 26 30 30 C 1.40093 * 119.54408 * 359.95382 * 29 28 27 31 31 H 1.08997 * 109.46801 * 293.41535 * 1 2 3 32 32 H 1.08997 * 109.47273 * 53.41866 * 1 2 3 33 33 H 1.09002 * 109.46712 * 173.41797 * 1 2 3 34 34 H 1.09009 * 109.49271 * 54.47362 * 4 2 1 35 35 H 1.08997 * 109.52671 * 294.39460 * 4 2 1 36 36 H 0.96999 * 119.99736 * 24.72062 * 7 5 4 37 37 H 0.97005 * 120.00329 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.49705 * 181.31343 * 16 5 4 39 39 H 1.08994 * 109.49940 * 301.41789 * 16 5 4 40 40 H 1.08999 * 109.58332 * 185.57906 * 17 16 5 41 41 H 1.08998 * 109.70613 * 65.22024 * 17 16 5 42 42 H 1.08003 * 118.98038 * 180.29674 * 23 22 21 43 43 H 1.07993 * 120.57910 * 179.71801 * 24 23 22 44 44 H 1.08006 * 120.27037 * 359.97438 * 26 25 24 45 45 H 1.08001 * 119.49809 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.45711 * 180.02562 * 28 27 26 47 47 H 1.08007 * 120.22878 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5675 -0.8478 1.1701 6 1 4.0061 0.1474 1.0990 7 7 4.0653 -1.5157 2.3754 8 6 5.3497 -1.2986 2.7974 9 1 5.9973 -0.6386 2.2392 10 6 5.8195 -1.9268 3.9426 11 7 7.0543 -1.7186 4.3480 12 14 4.6994 -3.0678 4.9084 13 1 4.8388 -4.4529 4.3913 14 1 5.0780 -3.0349 6.3439 15 1 3.2907 -2.6228 4.7576 16 6 3.9569 -1.6657 -0.0635 17 6 3.4650 -0.9468 -1.3238 18 7 2.0226 -0.6996 -1.1945 19 6 1.1675 -1.1062 -2.1536 20 8 -0.0092 -0.8097 -2.0842 21 6 1.6610 -1.9135 -3.2909 22 7 2.3524 -1.3407 -4.2613 23 6 2.8205 -2.0138 -5.2962 24 6 2.6119 -3.3567 -5.4420 25 6 1.8807 -4.0404 -4.4555 26 6 1.6252 -5.4179 -4.5335 27 6 0.9105 -6.0235 -3.5447 28 6 0.4300 -5.2959 -2.4574 29 6 0.6595 -3.9571 -2.3503 30 6 1.3908 -3.2996 -3.3480 31 1 -0.3633 0.4084 0.9430 32 1 -0.3634 0.6124 -0.8252 33 1 -0.3633 -1.0209 -0.1178 34 1 1.6030 -1.7253 1.2913 35 1 1.7660 -0.1673 2.1371 36 1 3.4837 -2.1085 2.8766 37 1 7.3827 -2.1579 5.1481 38 1 5.0412 -1.7695 -0.1037 39 1 3.4983 -2.6527 -0.0053 40 1 3.6518 -1.5717 -2.1972 41 1 3.9900 0.0020 -1.4343 42 1 3.3823 -1.4863 -6.0529 43 1 3.0017 -3.8833 -6.3005 44 1 1.9922 -5.9932 -5.3706 45 1 0.7137 -7.0838 -3.6038 46 1 -0.1336 -5.8015 -1.6872 47 1 0.2811 -3.4067 -1.5015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044725393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:43 Heat of formation + Delta-G solvation = 52.692236 kcal Electronic energy + Delta-G solvation = -29849.055504 eV Core-core repulsion = 25997.572639 eV Total energy + Delta-G solvation = -3851.482865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.47515 -40.06064 -37.69624 -37.46563 -34.69317 -33.67989 -32.38576 -31.99166 -31.52177 -30.09849 -29.66658 -27.24460 -25.36737 -24.30973 -23.86561 -23.23717 -22.73116 -21.61554 -20.28751 -19.54346 -18.13263 -17.83203 -17.54638 -17.04224 -16.25527 -16.07285 -15.35064 -15.08561 -14.86581 -14.48693 -14.35964 -14.18099 -14.05446 -13.95294 -13.66082 -13.42979 -13.11416 -12.88241 -12.61033 -12.49007 -12.27820 -12.22404 -12.12521 -11.91419 -11.49741 -11.47662 -11.04956 -10.97536 -10.87217 -10.56671 -10.48583 -10.32768 -10.03234 -9.90237 -9.62658 -9.42314 -9.18030 -8.96516 -8.55550 -8.35738 -7.31912 -5.80556 -3.16560 -0.07212 0.59418 1.52977 2.37328 2.69066 2.85900 3.34573 3.37718 3.42861 3.71871 3.97081 4.21668 4.39116 4.47638 4.55812 4.57910 4.79684 4.83883 4.93883 4.94130 5.02832 5.07167 5.17421 5.25314 5.39602 5.40571 5.44575 5.52125 5.54223 5.64526 5.73476 5.74668 5.79541 5.87458 5.99369 6.04837 6.05963 6.11303 6.21820 6.25906 6.27836 6.34585 6.39791 6.49669 6.61814 6.77251 6.90850 7.34510 7.57015 7.95024 8.03039 8.38422 9.16553 9.89261 10.08967 11.37662 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003460 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.531548 B = 8090.787968 C = 8709.565291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.151 4.151 17 C 0.112 3.888 18 N -0.586 5.586 19 C 0.578 3.422 20 O -0.523 6.523 21 C 0.145 3.855 22 N -0.459 5.459 23 C 0.079 3.921 24 C -0.144 4.144 25 C -0.024 4.024 26 C -0.114 4.114 27 C -0.093 4.093 28 C -0.114 4.114 29 C -0.081 4.081 30 C -0.081 4.081 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.160 0.840 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 -5.379 -19.847 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 H 0.097 0.903 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.374 4.374 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.581 5.581 12 Si 0.713 3.287 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.192 4.192 17 C -0.012 4.012 18 N -0.318 5.318 19 C 0.363 3.637 20 O -0.399 6.399 21 C -0.008 4.008 22 N -0.170 5.170 23 C -0.066 4.066 24 C -0.164 4.164 25 C -0.029 4.029 26 C -0.131 4.131 27 C -0.113 4.113 28 C -0.132 4.132 29 C -0.100 4.100 30 C -0.084 4.084 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.178 0.822 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.063 -4.218 -19.801 24.094 hybrid contribution -0.568 -1.918 0.618 2.094 sum -13.631 -6.136 -19.184 24.320 Atomic orbital electron populations 1.22208 0.92712 1.03528 1.01094 1.21379 0.95517 0.95500 0.83165 0.90346 1.22354 0.97582 1.00968 0.96867 1.20142 0.90728 0.95434 0.86324 0.92399 1.42780 1.12979 1.55290 1.27864 1.19069 0.87432 1.23708 1.07227 0.89144 1.24661 0.96074 1.00121 0.98126 1.69699 1.15106 1.47227 1.26047 0.86570 0.80578 0.81518 0.79983 1.21157 1.21732 1.20304 1.22654 1.02276 0.99684 0.94558 1.21860 0.78910 1.01076 0.99315 1.48159 1.07826 1.56025 1.19800 1.17794 0.85682 0.78867 0.81327 1.90869 1.16509 1.56130 1.76439 1.21463 0.94234 0.90538 0.94543 1.67430 1.08032 1.40111 1.01378 1.22239 0.97468 0.91728 0.95168 1.22081 0.99081 0.95980 0.99264 1.18134 0.96754 0.94300 0.93706 1.20974 0.99590 0.92767 0.99819 1.21045 0.96271 1.00388 0.93567 1.20997 0.99803 0.94054 0.98362 1.21027 0.96273 0.95059 0.97666 1.18636 1.00273 0.93150 0.96344 0.93328 0.90579 0.91830 0.91860 0.90231 0.80652 0.93040 0.90036 0.92347 0.90822 0.90676 0.82243 0.83998 0.84807 0.85263 0.85189 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.61 37.16 0.28 -1.56 16 2 C 0.15 2.03 3.49 -67.60 -0.24 1.80 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.11 4.84 -26.62 -0.13 -2.24 16 5 C 0.18 3.33 2.73 -67.88 -0.19 3.14 16 6 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 7 N -0.75 -17.00 4.93 -53.38 -0.26 -17.26 16 8 C -0.24 -6.68 10.41 -15.06 -0.16 -6.83 16 9 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 10 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.85 13.97 55.49 0.78 -28.08 16 12 Si 0.88 21.76 27.73 -169.99 -4.71 17.05 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 16 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 17 C 0.11 1.57 6.34 -3.71 -0.02 1.55 16 18 N -0.59 -8.37 2.97 -166.29 -0.49 -8.86 16 19 C 0.58 8.70 5.89 -12.28 -0.07 8.62 16 20 O -0.52 -8.69 12.63 5.33 0.07 -8.62 16 21 C 0.15 2.04 4.78 -82.55 -0.39 1.64 16 22 N -0.46 -6.09 9.73 -9.81 -0.10 -6.18 16 23 C 0.08 0.80 11.06 -18.03 -0.20 0.60 16 24 C -0.14 -1.29 9.88 -39.28 -0.39 -1.68 16 25 C -0.02 -0.25 5.75 -106.82 -0.61 -0.87 16 26 C -0.11 -0.96 9.82 -39.53 -0.39 -1.35 16 27 C -0.09 -0.77 9.95 -39.89 -0.40 -1.16 16 28 C -0.11 -1.09 9.95 -39.87 -0.40 -1.49 16 29 C -0.08 -0.96 9.42 -39.60 -0.37 -1.33 16 30 C -0.08 -1.04 5.76 -106.60 -0.61 -1.65 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.09 6.63 -51.93 -0.34 0.75 16 33 H 0.06 0.90 6.86 -51.93 -0.36 0.55 16 34 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.36 8.16 5.66 -40.82 -0.23 7.93 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.02 5.96 -51.93 -0.31 0.71 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.13 1.63 7.21 -52.48 -0.38 1.25 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -33.04 375.60 -10.30 -43.34 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.70 Total: 8.32 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -4.53 Total: -5.37 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.08 Total: -60.38 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.04 -10.30 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.028 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds