Wall clock time and date at job start Tue Mar 31 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70301 * 2 1 4 4 C 1.53189 * 109.58937 * 120.35247 * 2 1 3 5 5 C 1.53035 * 109.31369 * 174.42283 * 4 2 1 6 6 H 1.08994 * 109.46196 * 58.64452 * 5 4 2 7 7 N 1.46510 * 109.46229 * 178.62033 * 5 4 2 8 8 C 1.36931 * 120.00048 * 205.00441 * 7 5 4 9 9 H 1.08005 * 119.99844 * 359.71383 * 8 7 5 10 10 C 1.38807 * 120.00004 * 179.71910 * 8 7 5 11 11 N 1.31620 * 120.00123 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00217 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47274 * 89.99399 * 12 10 8 14 14 H 1.48503 * 109.47189 * 210.00026 * 12 10 8 15 15 H 1.48497 * 109.46743 * 329.99950 * 12 10 8 16 16 C 1.53047 * 109.53899 * 298.63447 * 5 4 2 17 17 C 1.53197 * 109.30765 * 61.36868 * 16 5 4 18 18 N 1.46923 * 108.77238 * 305.35928 * 17 16 5 19 19 C 1.34775 * 120.63009 * 233.58565 * 18 17 16 20 20 O 1.21542 * 119.99857 * 185.45023 * 19 18 17 21 21 C 1.47946 * 120.00343 * 5.45685 * 19 18 17 22 22 N 1.32204 * 120.15130 * 284.80262 * 21 19 18 23 23 C 1.32034 * 122.67139 * 179.74869 * 22 21 19 24 24 C 1.36680 * 122.03500 * 0.53479 * 23 22 21 25 25 C 1.40539 * 118.84475 * 359.74304 * 24 23 22 26 26 C 1.40323 * 122.22616 * 180.02562 * 25 24 23 27 27 C 1.36206 * 119.45561 * 179.97438 * 26 25 24 28 28 C 1.39380 * 121.00123 * 359.97369 * 27 26 25 29 29 C 1.36255 * 121.07938 * 0.04706 * 28 27 26 30 30 C 1.40093 * 119.54408 * 359.95382 * 29 28 27 31 31 H 1.08997 * 109.46801 * 293.41535 * 1 2 3 32 32 H 1.08997 * 109.47273 * 53.41866 * 1 2 3 33 33 H 1.09002 * 109.46712 * 173.41797 * 1 2 3 34 34 H 1.09009 * 109.49271 * 54.47362 * 4 2 1 35 35 H 1.08997 * 109.52671 * 294.39460 * 4 2 1 36 36 H 0.96999 * 119.99736 * 24.72062 * 7 5 4 37 37 H 0.97005 * 120.00329 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.49705 * 181.31343 * 16 5 4 39 39 H 1.08994 * 109.49940 * 301.41789 * 16 5 4 40 40 H 1.08999 * 109.58332 * 185.57906 * 17 16 5 41 41 H 1.08998 * 109.70613 * 65.22024 * 17 16 5 42 42 H 1.08003 * 118.98038 * 180.29674 * 23 22 21 43 43 H 1.07993 * 120.57910 * 179.71801 * 24 23 22 44 44 H 1.08006 * 120.27037 * 359.97438 * 26 25 24 45 45 H 1.08001 * 119.49809 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.45711 * 180.02562 * 28 27 26 47 47 H 1.08007 * 120.22878 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5675 -0.8478 1.1701 6 1 4.0061 0.1474 1.0990 7 7 4.0653 -1.5157 2.3754 8 6 5.3497 -1.2986 2.7974 9 1 5.9973 -0.6386 2.2392 10 6 5.8195 -1.9268 3.9426 11 7 7.0543 -1.7186 4.3480 12 14 4.6994 -3.0678 4.9084 13 1 4.8388 -4.4529 4.3913 14 1 5.0780 -3.0349 6.3439 15 1 3.2907 -2.6228 4.7576 16 6 3.9569 -1.6657 -0.0635 17 6 3.4650 -0.9468 -1.3238 18 7 2.0226 -0.6996 -1.1945 19 6 1.1675 -1.1062 -2.1536 20 8 -0.0092 -0.8097 -2.0842 21 6 1.6610 -1.9135 -3.2909 22 7 2.3524 -1.3407 -4.2613 23 6 2.8205 -2.0138 -5.2962 24 6 2.6119 -3.3567 -5.4420 25 6 1.8807 -4.0404 -4.4555 26 6 1.6252 -5.4179 -4.5335 27 6 0.9105 -6.0235 -3.5447 28 6 0.4300 -5.2959 -2.4574 29 6 0.6595 -3.9571 -2.3503 30 6 1.3908 -3.2996 -3.3480 31 1 -0.3633 0.4084 0.9430 32 1 -0.3634 0.6124 -0.8252 33 1 -0.3633 -1.0209 -0.1178 34 1 1.6030 -1.7253 1.2913 35 1 1.7660 -0.1673 2.1371 36 1 3.4837 -2.1085 2.8766 37 1 7.3827 -2.1579 5.1481 38 1 5.0412 -1.7695 -0.1037 39 1 3.4983 -2.6527 -0.0053 40 1 3.6518 -1.5717 -2.1972 41 1 3.9900 0.0020 -1.4343 42 1 3.3823 -1.4863 -6.0529 43 1 3.0017 -3.8833 -6.3005 44 1 1.9922 -5.9932 -5.3706 45 1 0.7137 -7.0838 -3.6038 46 1 -0.1336 -5.8015 -1.6872 47 1 0.2811 -3.4067 -1.5015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044725393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:42 Heat of formation + Delta-G solvation = 32.622548 kcal Electronic energy + Delta-G solvation = -29849.925791 eV Core-core repulsion = 25997.572639 eV Total energy + Delta-G solvation = -3852.353152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.38111 -41.09649 -38.88640 -38.36715 -36.34409 -34.62086 -33.88038 -33.40908 -32.27344 -31.60953 -30.65171 -28.53463 -26.36285 -25.77577 -24.63316 -24.35057 -24.09122 -22.73079 -21.72480 -20.69620 -19.61380 -18.95170 -18.59150 -17.97901 -17.34107 -16.96186 -16.74351 -16.37767 -15.95748 -15.84342 -15.43457 -15.33245 -15.13188 -14.89506 -14.76484 -14.63577 -14.60320 -14.10927 -13.91701 -13.76991 -13.44428 -13.24456 -13.12821 -12.99142 -12.79613 -12.76320 -12.66158 -12.21351 -12.10851 -12.07970 -12.02725 -11.79621 -11.47110 -11.25397 -10.95592 -10.86808 -10.26466 -10.16645 -9.75713 -9.33087 -9.09397 -8.01365 -5.34966 -0.85058 -0.15608 0.75636 1.28923 1.38237 1.40470 1.48057 1.71034 2.02294 2.48870 2.91656 3.02132 3.29828 3.43637 3.50394 3.64350 3.74250 3.75575 3.86826 3.90928 3.97343 4.09690 4.16635 4.24057 4.25334 4.35105 4.41863 4.46803 4.52497 4.55549 4.68803 4.70252 4.75619 4.80153 4.91890 4.93753 4.98330 5.06362 5.08921 5.18818 5.33251 5.37163 5.39848 5.41453 5.52801 5.60616 5.78087 5.82745 6.19199 6.22435 6.74173 6.91311 7.08202 7.83814 8.03165 9.20055 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003460 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.531548 B = 8090.787968 C = 8709.565291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.148 3.852 3 H 0.088 0.912 4 C -0.126 4.126 5 C 0.178 3.822 6 H 0.050 0.950 7 N -0.750 5.750 8 C -0.227 4.227 9 H 0.060 0.940 10 C -0.062 4.062 11 N -0.984 5.984 12 Si 0.951 3.049 13 H -0.281 1.281 14 H -0.297 1.297 15 H -0.252 1.252 16 C -0.138 4.138 17 C 0.124 3.876 18 N -0.587 5.587 19 C 0.579 3.421 20 O -0.547 6.547 21 C 0.110 3.890 22 N -0.478 5.478 23 C 0.058 3.942 24 C -0.121 4.121 25 C -0.046 4.046 26 C -0.104 4.104 27 C -0.099 4.099 28 C -0.106 4.106 29 C -0.116 4.116 30 C -0.096 4.096 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.364 0.636 37 H 0.257 0.743 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.189 0.811 43 H 0.184 0.816 44 H 0.170 0.830 45 H 0.163 0.837 46 H 0.148 0.852 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 -7.479 -21.824 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.045 3.955 3 H 0.106 0.894 4 C -0.165 4.165 5 C 0.070 3.930 6 H 0.068 0.932 7 N -0.392 5.392 8 C -0.358 4.358 9 H 0.078 0.922 10 C -0.253 4.253 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.207 1.207 14 H -0.224 1.224 15 H -0.176 1.176 16 C -0.179 4.179 17 C 0.001 3.999 18 N -0.319 5.319 19 C 0.366 3.634 20 O -0.425 6.425 21 C -0.042 4.042 22 N -0.189 5.189 23 C -0.087 4.087 24 C -0.141 4.141 25 C -0.051 4.051 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.124 4.124 29 C -0.136 4.136 30 C -0.099 4.099 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.197 0.803 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.206 0.794 43 H 0.201 0.799 44 H 0.188 0.812 45 H 0.181 0.819 46 H 0.165 0.835 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.514 -6.303 -21.816 26.950 hybrid contribution -0.110 -1.292 1.059 1.674 sum -14.624 -7.595 -20.757 26.503 Atomic orbital electron populations 1.22059 0.92053 1.02693 1.01575 1.21408 0.95933 0.95706 0.82427 0.89376 1.22212 0.94966 1.01394 0.97926 1.20346 0.92704 0.94746 0.85187 0.93180 1.42782 1.11419 1.55735 1.29286 1.19024 0.88717 1.21766 1.06254 0.92236 1.25436 0.97602 1.02558 0.99698 1.69877 1.17421 1.49269 1.26877 0.85473 0.79772 0.79254 0.77670 1.20734 1.22430 1.17616 1.22425 1.00995 0.99461 0.95007 1.21698 0.78951 1.01187 0.98050 1.48173 1.07709 1.56051 1.19947 1.18048 0.85345 0.78383 0.81654 1.90838 1.17421 1.56993 1.77211 1.21243 0.96782 0.91189 0.94960 1.67352 1.08191 1.41276 1.02061 1.22777 0.98062 0.92788 0.95111 1.22548 0.96634 0.95518 0.99354 1.18535 0.97435 0.95557 0.93621 1.21433 0.98291 0.91833 1.00628 1.21449 0.95684 1.01951 0.92741 1.21337 0.98703 0.93217 0.99157 1.21003 0.98436 0.96255 0.97908 1.18814 1.00707 0.92907 0.97459 0.91500 0.91656 0.92995 0.91792 0.89559 0.80265 0.93422 0.91909 0.92747 0.90256 0.89903 0.79442 0.79889 0.81211 0.81934 0.83451 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 7.61 71.98 0.55 -2.79 16 2 C 0.15 4.02 3.49 44.97 0.16 4.18 16 3 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.13 -3.74 4.84 30.67 0.15 -3.59 16 5 C 0.18 6.46 2.73 45.02 0.12 6.58 16 6 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 7 N -0.75 -33.92 4.93 -322.80 -1.59 -35.51 16 8 C -0.23 -12.60 10.41 84.03 0.87 -11.72 16 9 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 10 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 11 N -0.98 -62.49 13.97 21.65 0.30 -62.19 16 12 Si 0.95 45.00 27.73 68.60 1.90 46.90 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 15 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 16 C -0.14 -4.60 5.66 30.68 0.17 -4.43 16 17 C 0.12 3.52 6.34 86.36 0.55 4.06 16 18 N -0.59 -16.89 2.97 -798.30 -2.37 -19.26 16 19 C 0.58 17.85 5.89 86.82 0.51 18.36 16 20 O -0.55 -18.77 12.63 -3.85 -0.05 -18.82 16 21 C 0.11 3.12 4.78 42.42 0.20 3.33 16 22 N -0.48 -12.50 9.73 -184.96 -1.80 -14.30 16 23 C 0.06 1.06 11.06 84.30 0.93 2.00 16 24 C -0.12 -1.79 9.88 22.47 0.22 -1.56 16 25 C -0.05 -0.88 5.75 -21.29 -0.12 -1.00 16 26 C -0.10 -1.37 9.82 22.30 0.22 -1.15 16 27 C -0.10 -1.29 9.95 22.07 0.22 -1.07 16 28 C -0.11 -1.86 9.95 22.08 0.22 -1.64 16 29 C -0.12 -2.79 9.42 22.26 0.21 -2.58 16 30 C -0.10 -2.43 5.76 -21.15 -0.12 -2.55 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.88 6.63 -2.39 -0.02 1.87 16 33 H 0.05 1.49 6.86 -2.39 -0.02 1.47 16 34 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.36 15.96 5.66 -92.71 -0.52 15.44 16 37 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 2.20 5.96 -2.39 -0.01 2.19 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 45 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 46 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 47 H 0.11 3.00 7.21 -2.91 -0.02 2.98 16 Total: -1.00 -74.66 375.60 2.33 -72.33 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.40 Total: 29.54 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.53 Total: 1.30 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.46 Total: -131.26 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Total: -74.66 2.33 -72.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.950 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds