Wall clock time and date at job start Tue Mar 31 2020 22:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58509 * 2 1 4 4 C 1.53168 * 109.58857 * 239.56866 * 2 1 3 5 5 C 1.53029 * 109.32987 * 185.57090 * 4 2 1 6 6 H 1.09001 * 109.46164 * 181.38631 * 5 4 2 7 7 N 1.46500 * 109.46171 * 301.35640 * 5 4 2 8 8 C 1.36934 * 120.00270 * 205.02898 * 7 5 4 9 9 H 1.08000 * 120.00233 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00063 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99821 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00042 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47240 * 359.97438 * 12 10 8 14 14 H 1.48509 * 109.47211 * 239.99842 * 12 10 8 15 15 H 1.48507 * 109.47263 * 120.00037 * 12 10 8 16 16 C 1.53044 * 109.53003 * 61.37297 * 5 4 2 17 17 C 1.53193 * 109.30763 * 298.64214 * 16 5 4 18 18 N 1.46921 * 109.58873 * 120.28739 * 2 1 3 19 19 C 1.34779 * 120.63472 * 353.37247 * 18 2 1 20 20 O 1.21573 * 119.99151 * 357.66625 * 19 18 2 21 21 C 1.47758 * 120.00640 * 177.66708 * 19 18 2 22 22 C 1.40632 * 119.80044 * 33.34146 * 21 19 18 23 23 C 1.35703 * 120.92164 * 179.72702 * 22 21 19 24 24 C 1.40767 * 120.10727 * 0.52784 * 23 22 21 25 25 N 1.33648 * 120.82465 * 179.78107 * 24 23 22 26 26 C 1.31124 * 121.38952 * 179.97438 * 25 24 23 27 27 C 1.39314 * 121.77058 * 359.97438 * 26 25 24 28 28 C 1.36582 * 119.90448 * 0.02562 * 27 26 25 29 29 C 1.40895 * 118.15800 * 359.96409 * 28 27 26 30 30 C 1.38547 * 119.80871 * 213.61402 * 21 19 18 31 31 H 1.09003 * 109.46877 * 306.43527 * 1 2 3 32 32 H 1.08998 * 109.47157 * 66.43406 * 1 2 3 33 33 H 1.08995 * 109.47450 * 186.43885 * 1 2 3 34 34 H 1.08998 * 109.47979 * 65.61555 * 4 2 1 35 35 H 1.09005 * 109.49759 * 305.53434 * 4 2 1 36 36 H 0.97006 * 119.99886 * 25.02589 * 7 5 4 37 37 H 0.96998 * 120.00152 * 0.02562 * 11 10 8 38 38 H 1.08992 * 109.49731 * 58.59162 * 16 5 4 39 39 H 1.08992 * 109.49691 * 178.66108 * 16 5 4 40 40 H 1.09003 * 109.58700 * 174.42107 * 17 16 5 41 41 H 1.08998 * 109.59224 * 294.70129 * 17 16 5 42 42 H 1.08002 * 119.54349 * 359.97438 * 22 21 19 43 43 H 1.07997 * 119.95028 * 180.25637 * 23 22 21 44 44 H 1.08003 * 119.11580 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.04889 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.92006 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.29760 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2442 5 6 3.5674 -0.8494 -1.1693 6 1 3.9374 -1.3475 -2.0654 7 7 4.1570 0.4884 -1.0757 8 6 5.4410 0.7020 -1.5009 9 1 6.0193 -0.1158 -1.9048 10 6 5.9998 1.9696 -1.4118 11 7 5.2953 2.9662 -0.9191 12 14 7.7517 2.2608 -1.9911 13 1 8.3234 0.9877 -2.4985 14 1 8.5728 2.7541 -0.8562 15 1 7.7518 3.2722 -3.0785 16 6 3.9569 -1.6657 0.0653 17 6 3.4651 -0.9454 1.3247 18 7 2.0226 -0.6981 1.1952 19 6 1.1676 -1.1036 2.1550 20 8 -0.0185 -0.8553 2.0567 21 6 1.6716 -1.8498 3.3264 22 6 2.9515 -1.5682 3.8367 23 6 3.4348 -2.2358 4.9148 24 6 2.6586 -3.2340 5.5334 25 7 3.1222 -3.9033 6.5933 26 6 2.4086 -4.8348 7.1784 27 6 1.1345 -5.1740 6.7282 28 6 0.5994 -4.5294 5.6495 29 6 1.3692 -3.5290 5.0237 30 6 0.8829 -2.8267 3.9122 31 1 -0.3633 0.6104 0.8268 32 1 -0.3633 0.4109 -0.9419 33 1 -0.3634 -1.0211 0.1152 34 1 1.7657 -0.1694 -2.1362 35 1 1.6029 -1.7269 -1.2889 36 1 3.6378 1.2230 -0.7127 37 1 4.3857 2.8149 -0.6179 38 1 3.4983 -2.6528 0.0083 39 1 5.0411 -1.7700 0.1052 40 1 3.6519 -1.5691 2.1989 41 1 3.9922 0.0025 1.4329 42 1 3.5567 -0.8073 3.3664 43 1 4.4182 -2.0039 5.2961 44 1 2.8195 -5.3530 8.0322 45 1 0.5711 -5.9462 7.2309 46 1 -0.3868 -4.7789 5.2870 47 1 -0.0982 -3.0446 3.5167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044731464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:04 Heat of formation + Delta-G solvation = 70.512995 kcal Electronic energy + Delta-G solvation = -29613.463056 eV Core-core repulsion = 25762.752958 eV Total energy + Delta-G solvation = -3850.710098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.31125 -40.32376 -37.75545 -37.02711 -34.53143 -33.78524 -32.97675 -32.09142 -30.58116 -30.33746 -28.85750 -27.10137 -25.22314 -24.63316 -23.66117 -23.39557 -22.65331 -21.71139 -20.58060 -18.99879 -18.54109 -17.40325 -17.25567 -17.00906 -15.90071 -15.80984 -15.49021 -14.99154 -14.75771 -14.55595 -14.47000 -14.26342 -14.09575 -13.71335 -13.42688 -13.42078 -13.32026 -13.16702 -12.68990 -12.33098 -12.12178 -12.05240 -11.94177 -11.76649 -11.45935 -11.18212 -10.93624 -10.79392 -10.73412 -10.46470 -10.30222 -10.20344 -10.05761 -9.80389 -9.21729 -9.12671 -9.01130 -8.82988 -8.54695 -8.26507 -7.08721 -6.14075 -3.15034 0.00373 0.41526 1.66121 2.28407 2.98476 3.19189 3.49228 3.55069 3.64390 3.83612 3.98123 4.28196 4.39068 4.40192 4.56584 4.63055 4.77376 4.81868 4.92276 5.12000 5.16427 5.18806 5.27639 5.38595 5.47365 5.54491 5.57906 5.60935 5.64855 5.68773 5.74011 5.75873 5.89215 5.97055 5.98621 6.06090 6.06556 6.17692 6.20022 6.31429 6.38305 6.47498 6.50343 6.63439 6.63768 6.71179 6.93715 7.58343 7.60042 7.78122 8.25683 8.70819 9.17077 10.03507 10.18689 11.33725 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.003038 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.166543 B = 9214.044808 C =10495.221358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.146 3.854 3 H 0.077 0.923 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.733 5.733 8 C -0.330 4.330 9 H 0.065 0.935 10 C -0.044 4.044 11 N -0.944 5.944 12 Si 1.083 2.917 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.294 1.294 16 C -0.148 4.148 17 C 0.083 3.917 18 N -0.588 5.588 19 C 0.555 3.445 20 O -0.537 6.537 21 C -0.120 4.120 22 C -0.088 4.088 23 C -0.099 4.099 24 C 0.140 3.860 25 N -0.476 5.476 26 C 0.135 3.865 27 C -0.182 4.182 28 C -0.048 4.048 29 C -0.112 4.112 30 C -0.037 4.037 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.366 0.634 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.156 0.844 43 H 0.142 0.858 44 H 0.160 0.840 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -16.323 12.851 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 H 0.094 0.906 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.461 4.461 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.589 5.589 12 Si 0.915 3.085 13 H -0.222 1.222 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.189 4.189 17 C -0.039 4.039 18 N -0.319 5.319 19 C 0.343 3.657 20 O -0.417 6.417 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.117 4.117 24 C 0.019 3.981 25 N -0.184 5.184 26 C -0.037 4.037 27 C -0.202 4.202 28 C -0.074 4.074 29 C -0.114 4.114 30 C -0.056 4.056 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.174 0.826 43 H 0.160 0.840 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.158 0.842 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.652 -14.895 12.713 21.025 hybrid contribution -1.974 -1.264 -0.053 2.344 sum -9.626 -16.159 12.660 22.672 Atomic orbital electron populations 1.22198 0.92983 1.03325 1.00643 1.21269 0.95046 0.95723 0.83579 0.90559 1.22260 0.97470 1.00378 0.97232 1.20128 0.90189 0.87710 0.95121 0.93023 1.42521 1.14096 1.04712 1.76364 1.20087 0.90433 0.96987 1.38615 0.91703 1.25725 1.06056 0.91570 1.00835 1.70836 1.10989 1.32386 1.44689 0.83171 0.74468 0.74769 0.76117 1.22161 1.22059 1.22083 1.22499 1.01552 0.97959 0.96936 1.22665 0.79181 1.02161 0.99844 1.48075 1.07806 1.56240 1.19802 1.18219 0.85868 0.79304 0.82302 1.90824 1.16025 1.57167 1.77691 1.20067 0.95372 0.98999 0.97911 1.21570 0.94272 1.00044 0.94856 1.20750 1.00597 0.95213 0.95174 1.19013 0.91346 0.95289 0.92436 1.68081 1.35292 1.06982 1.08033 1.23028 0.90830 0.92362 0.97494 1.21886 0.97625 1.02184 0.98515 1.21548 0.99229 0.92660 0.93929 1.18779 0.95813 0.98913 0.97885 1.21307 0.98923 0.92744 0.92654 0.90934 0.93882 0.91708 0.90715 0.91908 0.79941 0.93421 0.93181 0.90654 0.88335 0.89674 0.82647 0.83973 0.82307 0.84381 0.84160 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 7.60 37.16 0.28 -1.80 16 2 C 0.15 2.40 3.19 -67.61 -0.22 2.19 16 3 H 0.08 1.40 6.65 -51.93 -0.35 1.05 16 4 C -0.13 -2.19 5.07 -26.63 -0.13 -2.32 16 5 C 0.18 3.35 3.10 -67.89 -0.21 3.14 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.60 16 7 N -0.73 -16.94 4.31 -53.39 -0.23 -17.17 16 8 C -0.33 -8.74 9.93 -15.06 -0.15 -8.89 16 9 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 10 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 11 N -0.94 -28.19 13.70 55.49 0.76 -27.43 16 12 Si 1.08 25.32 29.92 -169.99 -5.09 20.23 16 13 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 C -0.15 -2.44 5.78 -26.61 -0.15 -2.60 16 17 C 0.08 1.28 4.63 -3.71 -0.02 1.26 16 18 N -0.59 -9.24 2.97 -166.37 -0.49 -9.73 16 19 C 0.55 8.64 7.28 -12.37 -0.09 8.55 16 20 O -0.54 -9.32 12.24 5.30 0.06 -9.25 16 21 C -0.12 -1.61 5.52 -104.99 -0.58 -2.19 16 22 C -0.09 -1.08 7.32 -39.59 -0.29 -1.37 16 23 C -0.10 -1.17 9.95 -39.53 -0.39 -1.56 16 24 C 0.14 1.72 6.61 -84.78 -0.56 1.16 16 25 N -0.48 -5.55 10.33 -10.91 -0.11 -5.67 16 26 C 0.14 1.14 11.15 -17.45 -0.19 0.95 16 27 C -0.18 -1.29 10.03 -39.78 -0.40 -1.69 16 28 C -0.05 -0.40 9.89 -39.17 -0.39 -0.79 16 29 C -0.11 -1.26 5.74 -106.82 -0.61 -1.87 16 30 C -0.04 -0.44 9.35 -38.74 -0.36 -0.80 16 31 H 0.07 1.21 6.70 -51.93 -0.35 0.86 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.03 6.78 -51.93 -0.35 0.68 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.37 8.82 4.90 -40.82 -0.20 8.62 16 37 H 0.25 7.49 6.77 -40.82 -0.28 7.21 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.10 1.31 3.53 -53.98 -0.19 1.12 16 41 H 0.09 1.52 7.73 -51.93 -0.40 1.12 16 42 H 0.16 1.87 5.31 -52.49 -0.28 1.59 16 43 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.14 1.51 7.96 -52.49 -0.42 1.09 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -32.15 367.59 -10.36 -42.52 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.24 Total: 10.92 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -4.56 Total: -9.96 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.08 Total: -60.00 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.25 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.15 -10.36 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044731464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.030 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds