Wall clock time and date at job start Tue Mar 31 2020 22:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58509 * 2 1 4 4 C 1.53168 * 109.58857 * 239.56866 * 2 1 3 5 5 C 1.53029 * 109.32987 * 185.57090 * 4 2 1 6 6 H 1.09001 * 109.46164 * 181.38631 * 5 4 2 7 7 N 1.46500 * 109.46171 * 301.35640 * 5 4 2 8 8 C 1.36934 * 120.00270 * 205.02898 * 7 5 4 9 9 H 1.08000 * 120.00233 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00063 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99821 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00042 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47240 * 359.97438 * 12 10 8 14 14 H 1.48509 * 109.47211 * 239.99842 * 12 10 8 15 15 H 1.48507 * 109.47263 * 120.00037 * 12 10 8 16 16 C 1.53044 * 109.53003 * 61.37297 * 5 4 2 17 17 C 1.53193 * 109.30763 * 298.64214 * 16 5 4 18 18 N 1.46921 * 109.58873 * 120.28739 * 2 1 3 19 19 C 1.34779 * 120.63472 * 353.37247 * 18 2 1 20 20 O 1.21573 * 119.99151 * 357.66625 * 19 18 2 21 21 C 1.47758 * 120.00640 * 177.66708 * 19 18 2 22 22 C 1.40632 * 119.80044 * 33.34146 * 21 19 18 23 23 C 1.35703 * 120.92164 * 179.72702 * 22 21 19 24 24 C 1.40767 * 120.10727 * 0.52784 * 23 22 21 25 25 N 1.33648 * 120.82465 * 179.78107 * 24 23 22 26 26 C 1.31124 * 121.38952 * 179.97438 * 25 24 23 27 27 C 1.39314 * 121.77058 * 359.97438 * 26 25 24 28 28 C 1.36582 * 119.90448 * 0.02562 * 27 26 25 29 29 C 1.40895 * 118.15800 * 359.96409 * 28 27 26 30 30 C 1.38547 * 119.80871 * 213.61402 * 21 19 18 31 31 H 1.09003 * 109.46877 * 306.43527 * 1 2 3 32 32 H 1.08998 * 109.47157 * 66.43406 * 1 2 3 33 33 H 1.08995 * 109.47450 * 186.43885 * 1 2 3 34 34 H 1.08998 * 109.47979 * 65.61555 * 4 2 1 35 35 H 1.09005 * 109.49759 * 305.53434 * 4 2 1 36 36 H 0.97006 * 119.99886 * 25.02589 * 7 5 4 37 37 H 0.96998 * 120.00152 * 0.02562 * 11 10 8 38 38 H 1.08992 * 109.49731 * 58.59162 * 16 5 4 39 39 H 1.08992 * 109.49691 * 178.66108 * 16 5 4 40 40 H 1.09003 * 109.58700 * 174.42107 * 17 16 5 41 41 H 1.08998 * 109.59224 * 294.70129 * 17 16 5 42 42 H 1.08002 * 119.54349 * 359.97438 * 22 21 19 43 43 H 1.07997 * 119.95028 * 180.25637 * 23 22 21 44 44 H 1.08003 * 119.11580 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.04889 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.92006 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.29760 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2442 5 6 3.5674 -0.8494 -1.1693 6 1 3.9374 -1.3475 -2.0654 7 7 4.1570 0.4884 -1.0757 8 6 5.4410 0.7020 -1.5009 9 1 6.0193 -0.1158 -1.9048 10 6 5.9998 1.9696 -1.4118 11 7 5.2953 2.9662 -0.9191 12 14 7.7517 2.2608 -1.9911 13 1 8.3234 0.9877 -2.4985 14 1 8.5728 2.7541 -0.8562 15 1 7.7518 3.2722 -3.0785 16 6 3.9569 -1.6657 0.0653 17 6 3.4651 -0.9454 1.3247 18 7 2.0226 -0.6981 1.1952 19 6 1.1676 -1.1036 2.1550 20 8 -0.0185 -0.8553 2.0567 21 6 1.6716 -1.8498 3.3264 22 6 2.9515 -1.5682 3.8367 23 6 3.4348 -2.2358 4.9148 24 6 2.6586 -3.2340 5.5334 25 7 3.1222 -3.9033 6.5933 26 6 2.4086 -4.8348 7.1784 27 6 1.1345 -5.1740 6.7282 28 6 0.5994 -4.5294 5.6495 29 6 1.3692 -3.5290 5.0237 30 6 0.8829 -2.8267 3.9122 31 1 -0.3633 0.6104 0.8268 32 1 -0.3633 0.4109 -0.9419 33 1 -0.3634 -1.0211 0.1152 34 1 1.7657 -0.1694 -2.1362 35 1 1.6029 -1.7269 -1.2889 36 1 3.6378 1.2230 -0.7127 37 1 4.3857 2.8149 -0.6179 38 1 3.4983 -2.6528 0.0083 39 1 5.0411 -1.7700 0.1052 40 1 3.6519 -1.5691 2.1989 41 1 3.9922 0.0025 1.4329 42 1 3.5567 -0.8073 3.3664 43 1 4.4182 -2.0039 5.2961 44 1 2.8195 -5.3530 8.0322 45 1 0.5711 -5.9462 7.2309 46 1 -0.3868 -4.7789 5.2870 47 1 -0.0982 -3.0446 3.5167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044731464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:03 Heat of formation + Delta-G solvation = 52.081579 kcal Electronic energy + Delta-G solvation = -29614.262302 eV Core-core repulsion = 25762.752958 eV Total energy + Delta-G solvation = -3851.509345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.29410 -41.37073 -39.08976 -37.99775 -36.20874 -34.58702 -34.21966 -33.76538 -31.47393 -31.24554 -30.56964 -28.47766 -26.17957 -25.73652 -25.52196 -24.57426 -23.58185 -22.82015 -21.82409 -20.34825 -19.51215 -19.28762 -18.18047 -17.94218 -17.15701 -16.99240 -16.69115 -16.35446 -16.08226 -15.60081 -15.52105 -15.42308 -15.28399 -15.11011 -14.85822 -14.59888 -14.43896 -14.07627 -13.98741 -13.45223 -13.38365 -13.26070 -13.04733 -12.95562 -12.69731 -12.62974 -12.43308 -12.17099 -12.10447 -11.86572 -11.79172 -11.68041 -11.49157 -11.17527 -10.89164 -10.52685 -10.28610 -9.81436 -9.65553 -9.34645 -9.06586 -8.33331 -5.27400 -0.79871 -0.39074 0.86064 1.34923 1.60021 1.70392 1.80402 1.81642 2.11948 2.73131 3.02388 3.21301 3.32771 3.44389 3.52253 3.68009 3.70407 3.79324 3.89169 3.92499 3.95159 3.98482 4.03105 4.18292 4.22770 4.26493 4.37476 4.50141 4.52628 4.62790 4.70703 4.75740 4.82333 4.83823 4.91479 4.94761 4.96888 5.00065 5.11783 5.15197 5.16576 5.21696 5.25364 5.32434 5.44560 5.60882 5.67067 5.73043 6.33954 6.53888 6.87788 7.02205 7.13356 8.04146 8.16239 9.18059 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.003038 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.166543 B = 9214.044808 C =10495.221358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.146 3.854 3 H 0.050 0.950 4 C -0.123 4.123 5 C 0.172 3.828 6 H 0.046 0.954 7 N -0.742 5.742 8 C -0.318 4.318 9 H 0.066 0.934 10 C -0.105 4.105 11 N -0.978 5.978 12 Si 1.128 2.872 13 H -0.271 1.271 14 H -0.294 1.294 15 H -0.296 1.296 16 C -0.140 4.140 17 C 0.091 3.909 18 N -0.589 5.589 19 C 0.556 3.444 20 O -0.558 6.558 21 C -0.143 4.143 22 C -0.095 4.095 23 C -0.102 4.102 24 C 0.123 3.877 25 N -0.510 5.510 26 C 0.138 3.862 27 C -0.169 4.169 28 C -0.052 4.052 29 C -0.126 4.126 30 C -0.026 4.026 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.359 0.641 37 H 0.243 0.757 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.125 0.875 41 H 0.055 0.945 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.193 0.807 45 H 0.179 0.821 46 H 0.169 0.831 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 -19.606 14.242 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.043 3.957 3 H 0.068 0.932 4 C -0.161 4.161 5 C 0.063 3.937 6 H 0.064 0.936 7 N -0.385 5.385 8 C -0.450 4.450 9 H 0.084 0.916 10 C -0.296 4.296 11 N -0.627 5.627 12 Si 0.954 3.046 13 H -0.196 1.196 14 H -0.221 1.221 15 H -0.224 1.224 16 C -0.181 4.181 17 C -0.030 4.030 18 N -0.320 5.320 19 C 0.346 3.654 20 O -0.439 6.439 21 C -0.146 4.146 22 C -0.115 4.115 23 C -0.121 4.121 24 C 0.002 3.998 25 N -0.219 5.219 26 C -0.034 4.034 27 C -0.189 4.189 28 C -0.077 4.077 29 C -0.128 4.128 30 C -0.046 4.046 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.192 0.808 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.142 0.858 41 H 0.073 0.927 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.209 0.791 45 H 0.197 0.803 46 H 0.186 0.814 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.412 -18.239 14.104 24.543 hybrid contribution -1.837 -0.446 -0.311 1.916 sum -10.249 -18.685 13.793 25.385 Atomic orbital electron populations 1.22040 0.91923 1.03031 1.00749 1.21178 0.95727 0.94563 0.84203 0.93217 1.22138 0.95571 1.01465 0.96957 1.20359 0.91662 0.85815 0.95855 0.93636 1.42663 1.13268 1.06336 1.76204 1.20376 0.91523 0.96669 1.36410 0.91556 1.26997 1.09145 0.91880 1.01598 1.70944 1.10901 1.33427 1.47441 0.82585 0.70905 0.75536 0.75527 1.19638 1.22126 1.22358 1.22365 1.01065 0.98699 0.95940 1.22579 0.78860 1.01013 1.00556 1.48057 1.07847 1.56314 1.19814 1.18538 0.85513 0.78875 0.82497 1.90804 1.16828 1.58004 1.78284 1.19902 0.96317 1.00399 0.97980 1.21424 0.94144 1.00336 0.95551 1.20858 1.00976 0.95264 0.94994 1.19193 0.91947 0.95616 0.93016 1.68115 1.36614 1.08565 1.08575 1.23758 0.91235 0.90907 0.97505 1.22341 0.97010 1.01984 0.97524 1.21946 1.00152 0.91611 0.94007 1.18974 0.95979 0.99896 0.97971 1.21457 0.98865 0.91868 0.92405 0.92391 0.92537 0.91709 0.90976 0.89720 0.80773 0.94694 0.90750 0.91708 0.85818 0.92703 0.83186 0.83348 0.79060 0.80331 0.81371 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 7.60 71.98 0.55 -3.17 16 2 C 0.15 4.90 3.19 44.97 0.14 5.05 16 3 H 0.05 1.93 6.65 -2.39 -0.02 1.92 16 4 C -0.12 -3.95 5.07 30.66 0.16 -3.79 16 5 C 0.17 6.43 3.10 45.02 0.14 6.57 16 6 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 7 N -0.74 -35.20 4.31 -322.83 -1.39 -36.59 16 8 C -0.32 -17.07 9.93 84.03 0.83 -16.24 16 9 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 10 C -0.11 -5.95 5.50 84.86 0.47 -5.48 16 11 N -0.98 -60.38 13.70 21.65 0.30 -60.08 16 12 Si 1.13 51.53 29.92 68.60 2.05 53.58 16 13 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 16 C -0.14 -4.56 5.78 30.67 0.18 -4.38 16 17 C 0.09 2.89 4.63 86.36 0.40 3.29 16 18 N -0.59 -18.81 2.97 -798.53 -2.37 -21.19 16 19 C 0.56 17.40 7.28 86.76 0.63 18.03 16 20 O -0.56 -19.39 12.24 -3.94 -0.05 -19.44 16 21 C -0.14 -3.81 5.52 -20.10 -0.11 -3.92 16 22 C -0.09 -2.38 7.32 22.27 0.16 -2.21 16 23 C -0.10 -2.43 9.95 22.30 0.22 -2.21 16 24 C 0.12 2.89 6.61 40.36 0.27 3.16 16 25 N -0.51 -10.98 10.33 -188.45 -1.95 -12.92 16 26 C 0.14 1.85 11.15 85.06 0.95 2.80 16 27 C -0.17 -1.65 10.03 22.14 0.22 -1.43 16 28 C -0.05 -0.68 9.89 22.53 0.22 -0.46 16 29 C -0.13 -2.60 5.74 -21.29 -0.12 -2.72 16 30 C -0.03 -0.60 9.35 22.82 0.21 -0.38 16 31 H 0.06 1.96 6.70 -2.39 -0.02 1.95 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 2.01 6.78 -2.39 -0.02 1.99 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.36 18.14 4.90 -92.70 -0.45 17.68 16 37 H 0.24 14.98 6.77 -92.71 -0.63 14.35 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.12 3.33 3.53 -4.31 -0.02 3.32 16 41 H 0.05 2.07 7.73 -2.39 -0.02 2.06 16 42 H 0.15 3.79 5.31 -2.91 -0.02 3.78 16 43 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 44 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 46 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 47 H 0.15 2.99 7.96 -2.91 -0.02 2.97 16 Total: -1.00 -71.42 367.59 2.79 -68.63 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.69 Total: 35.50 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.52 Total: -7.50 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -5.41 Total: -130.77 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -71.42 2.79 -68.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044731464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.707 kcal (2) G-P(sol) polarization free energy of solvation -71.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds